Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 3.6e-63 244.6 111 100.0
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 2.4e-46 188.7 111 73.9
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 8.4e-44 180.3 111 68.5
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 4.5e-37 157.9 113 61.9
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 2.4e-35 152.1 111 63.1
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 2.1e-34 149.1 113 63.7
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 8.7e-33 143.7 113 60.2
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 7.4e-32 140.6 109 53.2
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 7.4e-32 140.6 113 58.4
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 9.6e-32 140.2 113 57.5
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 1.3e-31 139.8 113 60.2
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.8e-31 138.7 111 54.1
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 2.8e-31 138.7 113 55.8
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 2.4e-30 135.6 113 57.5
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 3.1e-30 135.2 113 57.5
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 3.1e-30 135.2 113 57.5
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 4.0e-30 134.8 113 54.9
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 6.9e-30 134.0 113 57.5
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 1.2e-29 133.3 113 55.8
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 2.6e-29 132.1 113 54.0
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 2.6e-29 132.1 113 54.0
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 4.5e-29 131.3 113 54.0
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 5.8e-29 131.0 113 54.0
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 5.8e-29 131.0 113 54.0
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 5.8e-29 131.0 113 54.0
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 9.9e-29 130.2 113 55.8
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 1.3e-28 129.8 113 53.1
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 2.2e-28 129.0 114 54.4
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 2.2e-28 129.0 114 54.4
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 2.2e-28 129.0 114 54.4
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 2.2e-28 129.0 114 54.4
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 2.9e-28 128.6 111 54.1
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 2.9e-28 128.6 111 52.3
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 3.8e-28 128.3 109 51.4
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 3.8e-28 128.3 114 55.3
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 3.8e-28 128.3 113 54.9
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.4e-28 127.5 113 52.2
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 6.4e-28 127.5 113 52.2
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 6.4e-28 127.5 113 52.2
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 8.4e-28 127.1 113 52.2
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 1.1e-27 126.7 113 53.1
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.1e-27 126.7 113 52.2
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 1.9e-27 125.9 113 51.3
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 2.4e-27 125.6 111 52.3
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.2e-27 125.2 113 51.3
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 4.2e-27 124.8 111 52.3
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 51.3
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 50.4
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 50.4
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 7.1e-27 124.0 113 52.2
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 1.2e-26 123.2 113 52.2
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 1.2e-26 123.2 115 53.0
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.6e-26 122.9 113 52.2
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 1.6e-26 122.9 113 51.3
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 1.6e-26 122.9 111 49.5
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 6.0e-26 120.9 113 52.2
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 7.9e-26 120.6 91 63.7
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 7.9e-26 120.6 91 56.0
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 7.9e-26 120.6 113 47.8
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.0e-25 120.2 113 53.1
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.0e-25 120.2 113 53.1
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 1.3e-25 119.8 113 51.3
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 2.3e-25 119.0 113 53.1
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 3.9e-25 118.2 111 48.6
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 3.9e-25 118.2 109 45.9
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 3.9e-25 118.2 113 51.3
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 4.3e-24 114.8 111 48.6
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 5.6e-24 114.4 111 46.8
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 5.6e-24 114.4 109 53.2
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 7.4e-24 114.0 114 51.8
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 7.4e-24 114.0 114 49.1
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 9.6e-24 113.6 113 49.6
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 9.6e-24 113.6 113 49.6
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 9.6e-24 113.6 111 46.8
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.3e-23 113.2 116 44.0
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 2.1e-23 112.5 113 50.4
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 4.8e-23 111.3 98 54.1
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 6.2e-23 110.9 114 52.6
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 6.2e-23 110.9 114 53.5
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 8.2e-23 110.5 113 49.6
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.1e-22 110.2 113 48.7
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.1e-22 110.2 100 53.0
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 2.4e-22 109.0 113 46.9
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 3.1e-22 108.6 113 47.8
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 4.0e-22 108.2 115 42.6
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 6.9e-22 107.5 113 45.1
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 9.0e-22 107.1 113 46.9
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 9.0e-22 107.1 114 48.2
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 9.0e-22 107.1 114 50.0
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 2.0e-21 105.9 113 46.9
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 45.9
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 45.9
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 45.9
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 45.9
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 45.9
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 45.9
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 45.9
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 46.8
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.4e-21 105.1 114 49.1
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 1.7e-20 102.8 109 48.6
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 2.9e-20 102.1 113 45.1
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 2.9e-20 102.1 113 45.1
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 2.9e-20 102.1 113 45.1
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 2.9e-20 102.1 113 45.1
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 2.9e-20 102.1 113 45.1
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 2.9e-20 102.1 113 45.1
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 2.9e-20 102.1 113 45.1
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 2.9e-20 102.1 113 45.1
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 2.9e-20 102.1 113 44.2
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 3.8e-20 101.7 113 45.1
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 3.8e-20 101.7 107 41.1
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 4.9e-20 101.3 113 45.1
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 2.5e-19 99.0 113 44.2
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 7.1e-19 97.4 111 41.4
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 9.3e-19 97.1 128 40.6
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 2.7e-18 95.5 71 57.7
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.7e-18 95.5 77 61.0
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 1.8e-17 92.8 106 50.0
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 8.7e-17 90.5 96 45.8
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 4.3e-16 88.2 113 47.8
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.6e-15 86.3 73 60.3
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 2.4e-14 82.4 138 39.1
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 5.3e-14 81.3 66 59.1
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 5.3e-14 81.3 87 46.0
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 2.6e-13 79.0 79 46.8
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 1.0e-12 77.0 68 54.4
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.4e-11 73.2 66 51.5
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 4.6e-10 68.2 71 47.9
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 1.0e-09 67.0 55 58.2
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.4e-09 66.6 65 47.7
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 3.9e-09 65.1 66 51.5
AagrBONN_evm.TU.Sc2ySwM_344.301 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.1e-06 57.0 66 39.4


User provided reference genes

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