Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 0.0e+00 3388.6 1707 100.0
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 0.0e+00 1883.2 1739 59.7
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.2e-189 668.7 1779 32.0
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 7.3e-171 606.3 1763 31.4
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 1.6e-165 588.6 1799 29.4
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 4.3e-163 580.5 1806 30.0
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 9.5e-163 579.3 1581 31.4
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 5.1e-156 557.0 1523 30.6
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 6.0e-149 533.5 1618 30.4
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.9e-147 528.5 1236 31.2
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 1.1e-145 522.7 1819 28.5
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 2.6e-144 518.1 1788 28.9
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.1e-139 502.7 1909 28.6
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 1.9e-139 501.9 1820 29.2
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 5.6e-139 500.4 1850 28.6
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 1.6e-138 498.8 1673 29.5
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 1.5e-136 492.3 1810 28.7
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 3.8e-135 487.6 1786 27.8
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 7.1e-134 483.4 1808 28.5
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.1e-133 481.9 1795 26.2
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.0e-132 479.6 1805 27.1
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.5e-131 474.9 1820 28.4
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 2.1e-130 471.9 1798 28.1
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.4e-128 464.5 1792 26.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.7e-127 462.2 1867 28.3
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 2.9e-127 461.5 1803 27.2
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 2.7e-125 454.9 1805 27.4
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.1e-121 443.0 1190 30.5
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 5.3e-121 440.7 1217 30.4
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 1.5e-120 439.1 1577 27.5
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.5e-120 439.1 1780 26.5
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 1.5e-120 439.1 1602 27.6
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 2.0e-120 438.7 1694 27.6
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 5.8e-120 437.2 1783 26.4
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 7.6e-120 436.8 1375 29.5
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 2.2e-119 435.3 1805 27.6
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 2.9e-119 434.9 1847 26.6
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 5.0e-119 434.1 1773 27.2
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.7e-117 428.3 1854 27.0
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.7e-117 428.3 1806 27.2
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 3.5e-117 427.9 1836 27.6
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 3.0e-116 424.9 1840 26.7
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 3.9e-116 424.5 1805 27.8
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 4.3e-115 421.0 1823 26.4
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 1.3e-114 419.5 1801 27.5
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 4.5e-112 411.0 1823 27.6
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 2.2e-111 408.7 1805 27.4
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 2.2e-111 408.7 1801 26.4
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 4.2e-110 404.4 1851 26.1
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 3.6e-109 401.4 1816 27.0
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 4.6e-109 401.0 1808 27.1
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 3.0e-108 398.3 1809 27.0
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 5.1e-108 397.5 1844 26.7
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 6.7e-108 397.1 1806 26.6
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 5.7e-107 394.0 1275 28.8
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 2.2e-106 392.1 1812 26.8
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 1.8e-105 389.0 1818 25.7
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 5.3e-105 387.5 1588 26.7
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.5e-102 378.6 1060 31.2
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 3.2e-102 378.3 769 35.2
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 4.2e-102 377.9 1681 26.7
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 2.3e-100 372.1 1853 26.6
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 3.1e-89 335.1 933 29.3
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 3.5e-88 331.6 1774 24.2
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 3.0e-84 318.5 1764 25.2
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 4.0e-84 318.2 743 34.3
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 5.2e-84 317.8 1772 24.3
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 9.1e-81 307.0 712 32.7
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 3.5e-80 305.1 760 32.4
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 3.8e-79 301.6 691 35.9
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.9e-78 299.3 761 33.1
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 7.2e-78 297.4 744 33.6
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 3.6e-77 295.0 683 34.1
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 6.1e-77 294.3 800 31.5
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 8.0e-77 293.9 697 34.6
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.0e-76 291.6 718 33.6
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 4.0e-76 291.6 703 32.7
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 2.0e-75 289.3 703 33.9
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 3.7e-74 285.0 657 34.9
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 6.3e-74 284.3 944 27.8
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 1.1e-73 283.5 752 31.8
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.4e-73 283.1 342 47.1
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-71 276.6 508 38.4
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-71 276.6 483 38.5
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 1.5e-70 273.1 647 33.2
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 7.2e-70 270.8 665 34.1
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-69 270.0 327 47.1
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 5.7e-67 261.2 470 38.7
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 8.3e-66 257.3 827 28.3
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 5.4e-65 254.6 695 31.5
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 9.2e-65 253.8 469 38.0
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 2.0e-64 252.7 313 46.0
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 2.7e-64 252.3 268 50.7
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.3e-63 249.2 755 30.6
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 1.5e-62 246.5 694 30.5
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 6.4e-58 231.1 698 31.1
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 8.3e-58 230.7 707 28.6
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.6e-53 216.5 266 45.1
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.6e-53 216.5 266 45.1
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 5.2e-52 211.5 263 43.7
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.3e-46 192.2 551 31.9
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 3.4e-43 182.2 604 26.8
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 6.0e-40 171.4 267 37.8
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 1.4e-36 160.2 745 25.5
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.2e-34 152.9 189 45.5
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 4.9e-34 151.8 596 28.4
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 5.4e-33 148.3 507 26.6
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 5.6e-30 138.3 239 36.0
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.1e-28 132.5 331 31.4
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.4e-25 123.6 115 53.9
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.5e-22 113.6 126 50.8
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.1e-21 109.8 518 28.4
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 8.1e-21 107.8 196 32.7
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 9.0e-20 104.4 504 26.6
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 7.1e-09 68.2 165 33.3
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 1.0e-07 64.3 149 26.8
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 7.4e-06 58.2 144 27.1


User provided reference genes

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