Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 9.8e-161 570.1 290 100.0
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 1.8e-138 496.1 292 86.6
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 1.4e-106 390.2 289 67.1
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 5.3e-106 388.3 290 65.5
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 1.7e-104 383.3 289 66.4
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 3.8e-104 382.1 291 65.3
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 1.1e-103 380.6 300 64.0
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 1.4e-103 380.2 284 66.2
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 4.2e-103 378.6 291 63.2
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 5.5e-103 378.3 290 63.4
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 2.1e-102 376.3 283 66.4
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 2.7e-102 375.9 296 64.9
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 2.7e-102 375.9 288 63.5
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 4.6e-102 375.2 296 63.5
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 4.6e-102 375.2 272 67.3
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 4.6e-102 375.2 296 64.5
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 7.9e-102 374.4 288 63.2
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.3e-101 373.6 290 65.5
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 1.3e-101 373.6 296 64.2
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.8e-101 373.2 290 63.8
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.8e-101 373.2 292 64.4
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 3.9e-101 372.1 290 65.2
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 3.9e-101 372.1 290 63.4
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.9e-100 369.8 290 62.8
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 2.5e-100 369.4 290 65.5
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 3.3e-100 369.0 290 65.5
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 4.3e-100 368.6 295 64.4
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 4.3e-100 368.6 295 63.7
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 5.7e-100 368.2 290 61.4
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 7.4e-100 367.9 289 63.3
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 7.4e-100 367.9 290 65.2
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 1.6e-99 366.7 293 63.1
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 3.7e-99 365.5 292 64.0
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 4.8e-99 365.2 292 63.0
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 6.3e-99 364.8 327 57.5
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 8.2e-99 364.4 289 63.3
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 8.2e-99 364.4 293 62.8
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 8.2e-99 364.4 276 67.0
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 8.2e-99 364.4 287 64.1
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 1.1e-98 364.0 292 63.4
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 1.1e-98 364.0 285 64.2
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 1.4e-98 363.6 292 63.7
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 2.4e-98 362.8 289 63.0
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 3.1e-98 362.5 290 61.7
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 3.1e-98 362.5 293 62.1
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 5.3e-98 361.7 291 62.2
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 6.9e-98 361.3 285 64.2
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 6.9e-98 361.3 283 62.9
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 6.9e-98 361.3 288 62.2
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 9.0e-98 360.9 292 63.0
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.5e-97 360.1 292 63.4
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 1.5e-97 360.1 291 62.9
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 2.0e-97 359.8 292 62.7
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 2.0e-97 359.8 276 64.9
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.0e-97 359.8 291 63.9
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 2.6e-97 359.4 289 63.3
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 2.6e-97 359.4 290 61.0
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 2.6e-97 359.4 293 61.1
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 4.5e-97 358.6 292 62.7
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 5.9e-97 358.2 291 62.9
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 7.7e-97 357.8 290 63.4
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 7.7e-97 357.8 305 60.0
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 1.0e-96 357.5 291 61.2
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 2.2e-96 356.3 286 60.8
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 2.9e-96 355.9 293 61.1
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 2.9e-96 355.9 302 59.3
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.8e-96 355.5 268 64.9
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 5.0e-96 355.1 278 64.0
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 6.5e-96 354.8 286 60.8
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 6.5e-96 354.8 293 60.8
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 8.5e-96 354.4 290 60.3
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 1.1e-95 354.0 273 64.1
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.1e-95 354.0 291 61.2
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 1.4e-95 353.6 293 60.4
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 4.2e-95 352.1 292 59.9
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 6.1e-94 348.2 273 63.7
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.0e-93 347.4 310 59.4
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.0e-93 345.9 309 57.6
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.4e-92 341.3 309 57.0
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 7.4e-92 341.3 292 61.3
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 7.4e-92 341.3 277 61.7
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 2.4e-90 336.3 275 62.5
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 4.1e-90 335.5 279 62.0
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 3.0e-85 319.3 253 64.0
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 6.5e-80 301.6 289 52.2
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 2.5e-79 299.7 240 65.8
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 4.2e-79 298.9 246 62.2
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 2.1e-78 296.6 244 63.1
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 4.7e-78 295.4 195 72.3
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 6.1e-78 295.0 283 53.4
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 6.1e-78 295.0 244 63.1
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 6.7e-77 291.6 250 61.6
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 1.5e-76 290.4 291 54.0
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.3e-76 289.3 241 64.3
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 1.7e-75 287.0 237 62.9
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.4e-74 283.9 200 67.5
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 8.0e-70 268.1 270 55.2
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 3.1e-66 256.1 221 60.2
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 3.1e-66 256.1 271 53.1
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 5.9e-65 251.9 216 60.6
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 6.5e-64 248.4 149 77.2
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.0e-61 241.1 321 42.1
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 8.8e-61 238.0 210 60.5
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.8e-58 230.3 234 56.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 4.1e-58 229.2 246 51.2
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 4.7e-54 215.7 251 51.0
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.8e-53 213.8 378 38.4
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 6.8e-53 211.8 285 46.0
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 3.4e-52 209.5 216 55.1
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 5.9e-49 198.7 181 56.9
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.5e-47 194.1 228 50.4
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 1.6e-46 190.7 111 77.5
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 7.5e-44 181.8 128 67.2
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 9.8e-44 181.4 177 54.8
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 1.1e-42 177.9 120 68.3
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 2.7e-41 173.3 174 54.6
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 5.0e-40 169.1 95 83.2
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.8e-38 163.3 96 81.2
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 1.1e-37 161.4 161 50.3
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 9.8e-36 154.8 162 53.7
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 2.7e-33 146.7 206 45.6
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 1.5e-28 131.0 79 70.9
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 7.6e-28 128.6 342 31.3
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 4.1e-26 122.9 242 34.3
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 4.1e-26 122.9 70 81.4
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 1.2e-25 121.3 133 45.9
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 1.7e-24 117.5 157 41.4
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.2e-19 100.5 144 41.0
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 1.4e-18 97.8 122 45.1
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 7.1e-10 68.9 31 87.1
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.8e-08 64.3 56 57.1


User provided reference genes

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