Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 0.0e+00 1667.5 915 100.0
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 3.3e-218 762.7 740 58.5
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.2e-212 744.2 745 57.2
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.8e-201 706.4 740 55.1
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 9.0e-184 648.3 942 45.0
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 2.6e-183 646.7 951 47.3
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.1e-179 632.5 910 45.5
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.4e-173 613.6 944 43.8
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 5.4e-173 612.5 924 43.6
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 5.4e-173 612.5 924 43.6
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 1.3e-169 601.3 954 43.7
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 1.6e-169 600.9 941 44.4
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 1.4e-168 597.8 928 44.5
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 2.4e-168 597.0 897 44.9
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 3.4e-167 593.2 931 42.5
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 3.0e-163 580.1 927 43.5
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 5.1e-163 579.3 927 47.5
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 6.7e-163 578.9 862 45.1
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 1.3e-161 574.7 950 47.3
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 6.2e-161 572.4 1003 41.2
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 8.2e-161 572.0 933 42.7
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 1.8e-160 570.9 934 44.5
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 3.1e-160 570.1 935 43.1
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 3.1e-160 570.1 959 41.3
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 4.0e-160 569.7 935 43.1
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 6.9e-160 568.9 799 46.6
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 9.0e-160 568.5 825 44.4
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.6e-159 567.0 973 42.3
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.0e-158 565.1 968 41.5
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.3e-158 564.7 938 42.3
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.3e-158 564.7 886 42.4
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 4.9e-158 562.8 846 49.9
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 7.1e-157 558.9 943 42.7
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 9.3e-157 558.5 943 43.1
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 4.6e-156 556.2 922 43.8
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.3e-155 554.7 931 42.5
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 5.1e-155 552.7 913 43.5
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.1e-154 551.6 984 41.2
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 1.5e-154 551.2 961 41.5
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 1.5e-154 551.2 932 42.1
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 1.9e-154 550.8 945 41.6
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 2.5e-154 550.4 951 42.4
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 2.5e-154 550.4 815 45.2
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 9.7e-154 548.5 957 40.5
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 9.7e-154 548.5 763 45.7
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 3.7e-153 546.6 896 43.2
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 4.8e-153 546.2 924 42.0
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.3e-153 545.8 896 43.2
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.1e-152 545.0 977 40.5
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 1.1e-152 545.0 988 42.6
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.8e-152 544.3 965 41.7
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 2.4e-152 543.9 952 41.9
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.2e-151 541.6 882 43.4
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 3.8e-150 536.6 920 41.3
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 6.5e-150 535.8 920 42.3
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.1e-149 535.0 930 41.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.1e-149 535.0 949 40.8
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.4e-149 534.6 948 41.5
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 1.9e-149 534.3 930 40.9
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.9e-149 534.3 954 41.3
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.6e-148 531.2 901 42.6
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.1e-148 530.8 844 43.2
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 2.7e-148 530.4 830 43.7
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 2.3e-147 527.3 942 41.5
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 3.9e-147 526.6 1016 39.3
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.1e-146 525.0 862 43.7
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 1.1e-146 525.0 940 40.9
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 4.3e-146 523.1 919 40.9
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 5.7e-146 522.7 942 40.8
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 5.7e-146 522.7 709 47.2
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 3.1e-144 516.9 962 39.3
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.5e-143 514.6 957 40.6
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.6e-143 513.8 1004 38.6
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 5.9e-143 512.7 932 40.9
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 5.9e-143 512.7 933 40.5
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 7.7e-143 512.3 961 40.5
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.3e-142 511.5 965 39.7
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 2.9e-142 510.4 933 40.6
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 3.8e-142 510.0 1010 38.5
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 8.5e-142 508.8 773 44.8
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.4e-141 508.1 928 40.9
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 1.9e-141 507.7 936 39.5
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.5e-141 506.1 896 41.6
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.1e-140 502.7 956 40.5
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.0e-139 501.9 891 41.9
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 2.3e-139 500.7 507 56.4
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 6.7e-139 499.2 933 42.4
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 3.3e-138 496.9 790 43.5
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 4.4e-138 496.5 962 39.5
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 4.4e-138 496.5 962 39.5
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 7.4e-138 495.7 913 39.8
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 6.3e-137 492.7 770 48.1
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 2.0e-135 487.6 940 42.4
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 2.0e-135 487.6 523 53.7
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 3.5e-135 486.9 951 38.9
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 3.5e-135 486.9 951 38.9
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 4.5e-135 486.5 814 41.9
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 2.9e-134 483.8 929 39.3
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 8.5e-134 482.3 483 55.7
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 6.1e-132 476.1 525 53.1
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 8.0e-132 475.7 973 37.9
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 1.8e-131 474.6 910 40.0
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 1.3e-129 468.4 826 40.8
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 1.3e-129 468.4 826 40.8
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 1.3e-129 468.4 843 40.5
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 3.7e-129 466.8 941 38.8
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.2e-127 461.8 821 40.1
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 2.6e-127 460.7 944 39.1
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 2.9e-126 457.2 951 39.0
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.5e-125 453.0 415 60.5
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 1.4e-123 448.4 950 38.1
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 1.2e-116 425.2 944 37.6
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 5.2e-115 419.9 939 37.2
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 6.8e-115 419.5 944 37.3
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 6.8e-115 419.5 944 37.3
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 3.7e-113 413.7 767 37.8
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 9.8e-106 389.0 308 66.2
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 3.9e-102 377.1 961 37.3
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.1e-96 359.0 859 36.7
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 6.0e-95 353.2 257 70.4
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 9.5e-93 345.9 257 69.3
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.2e-91 340.1 859 36.9
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.7e-86 325.1 931 33.4
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 6.4e-81 306.6 805 33.9
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.1e-80 303.9 372 50.5
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 7.8e-79 299.7 249 62.7
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 1.9e-77 295.0 601 37.4
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.8e-75 288.5 275 61.1
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.5e-69 268.1 333 50.5
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 6.2e-44 183.7 265 42.6
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 2.4e-43 181.8 482 33.8
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.7e-41 175.6 145 60.0
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 6.5e-41 173.7 151 62.3
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 1.0e-38 166.4 138 65.2
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 3.9e-38 164.5 183 49.2
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 3.1e-35 154.8 313 35.1
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 1.1e-32 146.4 456 30.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.0e-30 139.8 527 30.0
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.0e-29 135.6 165 47.3
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.2e-26 126.3 247 34.8
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.9e-25 121.7 249 38.2
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 3.2e-24 118.2 85 70.6
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 2.1e-23 115.5 75 74.7
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 1.4e-22 112.8 75 73.3
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 1.4e-19 102.8 80 60.0
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.5e-16 90.9 575 25.7
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.5e-16 90.9 575 25.7
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 8.8e-14 83.6 49 77.6
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 8.8e-14 83.6 380 28.2
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.1e-13 83.2 71 60.6
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 1.5e-13 82.8 256 34.4
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 7.4e-13 80.5 49 73.5
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 4.8e-12 77.8 52 71.2
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 3.1e-11 75.1 47 72.3
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 2.5e-08 65.5 47 72.3
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 4.2e-08 64.7 292 28.8
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 5.5e-08 64.3 49 67.3
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 3.6e-07 61.6 53 58.5
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 8.0e-07 60.5 273 31.5


User provided reference genes

Program Settings