Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.8e-126 456.4 328 100.0
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.0e-97 360.9 328 63.1
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 3.9e-57 226.1 214 59.3
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 8.8e-57 224.9 215 56.7
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 3.3e-56 223.0 214 55.1
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 3.3e-56 223.0 214 58.4
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 4.4e-56 222.6 216 58.3
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.3e-55 221.1 215 57.2
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 3.7e-55 219.5 216 56.5
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 8.2e-55 218.4 215 55.8
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 1.1e-54 218.0 216 56.0
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.4e-54 217.6 215 54.9
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.4e-54 217.6 217 55.8
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 3.1e-54 216.5 213 55.9
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 5.3e-54 215.7 216 55.1
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 5.3e-54 215.7 218 53.7
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 6.9e-54 215.3 218 56.4
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-53 214.5 215 55.3
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.2e-53 214.5 216 55.6
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.2e-53 214.5 215 54.9
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 2.6e-53 213.4 212 55.7
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 3.4e-53 213.0 215 55.8
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 4.5e-53 212.6 216 53.7
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 4.5e-53 212.6 214 55.1
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 4.5e-53 212.6 214 55.1
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 5.9e-53 212.2 219 54.3
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 5.9e-53 212.2 214 56.5
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 7.7e-53 211.8 213 54.9
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 7.7e-53 211.8 216 54.6
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 7.7e-53 211.8 218 54.1
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.0e-52 211.5 217 53.5
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.0e-52 211.5 214 56.1
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.3e-52 211.1 213 54.9
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.3e-52 211.1 215 56.3
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.7e-52 210.7 215 54.9
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.7e-52 210.7 216 54.6
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.7e-52 210.7 216 52.8
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.7e-52 210.7 215 54.9
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 2.2e-52 210.3 213 55.4
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.2e-52 210.3 216 56.5
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 2.2e-52 210.3 218 53.2
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.8e-52 209.5 215 54.4
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 3.8e-52 209.5 213 55.4
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 3.8e-52 209.5 217 51.6
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 3.8e-52 209.5 212 55.2
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 5.0e-52 209.1 215 54.9
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 5.0e-52 209.1 215 53.5
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 5.0e-52 209.1 216 56.0
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 6.5e-52 208.8 218 55.0
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 6.5e-52 208.8 221 54.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 6.5e-52 208.8 213 54.9
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 6.5e-52 208.8 217 52.5
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.5e-52 208.8 215 56.3
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.1e-51 208.0 217 54.8
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.1e-51 208.0 212 55.7
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-51 208.0 217 54.4
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.4e-51 207.6 213 53.5
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.9e-51 207.2 218 54.6
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.9e-51 207.2 216 53.7
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 2.5e-51 206.8 214 56.5
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 3.2e-51 206.5 216 54.2
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.2e-51 206.5 212 54.7
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 3.2e-51 206.5 216 54.2
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.2e-51 206.5 216 53.2
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 4.2e-51 206.1 212 54.2
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 4.2e-51 206.1 213 54.9
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.2e-51 206.1 217 56.2
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 5.5e-51 205.7 218 53.7
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 5.5e-51 205.7 217 51.6
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 5.5e-51 205.7 217 56.2
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.5e-51 205.7 212 54.7
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 5.5e-51 205.7 212 54.7
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 5.5e-51 205.7 216 53.7
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 5.5e-51 205.7 216 54.2
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.2e-51 205.3 217 56.2
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 7.2e-51 205.3 217 53.5
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 7.2e-51 205.3 216 52.8
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 9.4e-51 204.9 212 54.7
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 9.4e-51 204.9 216 52.8
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.6e-50 204.1 215 55.8
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.1e-50 203.8 214 53.7
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 2.1e-50 203.8 218 52.8
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.1e-50 203.8 225 51.1
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 2.7e-50 203.4 215 54.9
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 3.6e-50 203.0 214 54.7
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 4.7e-50 202.6 219 53.0
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 4.7e-50 202.6 218 53.2
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 4.7e-50 202.6 213 54.0
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 6.1e-50 202.2 213 52.1
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 7.9e-50 201.8 217 53.0
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.0e-49 201.4 213 54.0
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.4e-49 201.1 216 55.6
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.4e-49 201.1 214 54.2
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.9e-49 199.5 212 52.4
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 6.7e-49 198.7 215 52.1
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 6.7e-49 198.7 216 50.5
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 8.8e-49 198.4 215 49.8
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 3.3e-48 196.4 217 51.2
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 7.4e-48 195.3 215 51.6
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.3e-47 194.5 236 50.0
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 4.8e-47 192.6 215 51.2
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.3e-47 192.2 212 49.1
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 8.2e-47 191.8 211 50.7
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 8.2e-47 191.8 211 50.7
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.4e-46 191.0 214 50.0
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.8e-46 190.7 199 54.8
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.8e-46 190.7 212 48.6
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 3.1e-46 189.9 211 50.7
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.2e-45 188.0 212 48.6
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.0e-45 187.2 214 48.6
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-44 184.5 226 47.3
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-44 184.5 226 47.3
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 2.2e-44 183.7 210 49.5
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 6.5e-44 182.2 210 49.0
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.1e-43 181.4 205 50.2
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.1e-43 181.4 260 43.5
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.1e-43 181.4 215 49.8
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 3.2e-43 179.9 264 42.8
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.7e-42 176.8 145 59.3
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.4e-41 174.5 137 62.0
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 6.7e-41 172.2 187 49.7
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 6.7e-41 172.2 201 50.7
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 3.7e-39 166.4 229 46.7
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 3.7e-39 166.4 221 41.2
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.3e-36 157.9 235 40.4
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 6.5e-36 155.6 184 47.8
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 8.5e-36 155.2 217 44.2
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 6.1e-34 149.1 121 60.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.2e-32 144.8 214 44.9
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-30 138.3 214 39.7
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.5e-29 132.9 214 39.3
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 7.7e-29 132.1 104 61.5
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.5e-24 117.9 228 33.8
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 3.7e-23 113.2 186 39.2
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 3.7e-23 113.2 84 61.9
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.4e-22 111.3 179 37.4
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-20 104.4 85 61.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.5e-19 101.3 81 54.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-19 101.3 112 45.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.6e-18 97.8 81 53.1
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 9.8e-16 88.6 124 39.5
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 9.8e-16 88.6 123 42.3
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.2e-15 87.4 109 42.2
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 5.4e-14 82.8 90 51.1
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 4.7e-10 69.7 107 44.9
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.8e-09 67.8 168 31.0
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 4.0e-09 66.6 46 67.4
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.0e-08 64.3 79 49.4
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 1.1e-06 58.5 170 25.9
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-06 58.5 45 62.2
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 3.2e-06 57.0 52 55.8
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 5.4e-06 56.2 49 51.0


User provided reference genes

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