Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0150400 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 2.0e-118 429.1 212 100.0
Os01g0150800 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.9e-44 183.3 185 56.2
Os01g0150500 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 6.7e-42 174.9 148 63.5
Os04g0271200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 2.0e-41 173.3 179 53.6
Os01g0150200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 5.7e-41 171.8 179 53.1
Zm00001eb124340 Zea mays HOM05D004350 ORTHO05D005260 4.8e-40 168.7 179 53.6
Zm00001eb335910 Zea mays HOM05D004350 ORTHO05D005260 1.3e-37 160.6 184 48.9
arahy.Tifrunner.gnm1.ann1.4PU0PP Arachis hypogaea HOM05D004350 ORTHO05D005260 3.8e-37 159.1 179 48.6
arahy.Tifrunner.gnm1.ann1.Y3UPDN Arachis hypogaea HOM05D004350 ORTHO05D005260 3.8e-37 159.1 179 48.6
MBI16_g27585_MAGBIO Magnolia biondii HOM05D004350 ORTHO05D005260 1.5e-36 157.1 148 55.4
Lalb_Chr05g0216341 Lupinus albus HOM05D004350 ORTHO05D005260 3.2e-36 156.0 179 47.5
PGR031G0248 Punica granatum HOM05D004350 ORTHO05D005260 4.2e-36 155.6 179 48.0
PGSC0003DMG400016135 Solanum tuberosum HOM05D004350 ORTHO05D005260 7.2e-36 154.8 144 56.2
Phvul.003G289100 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 1.2e-35 154.1 179 48.6
Glyma.08G279700 Glycine max HOM05D004350 ORTHO05D005260 1.6e-35 153.7 179 48.0
HPP92_014310 Vanilla planifolia HOM05D004350 ORTHO05D005260 4.7e-35 152.1 179 47.5
Gohir.A11G206700 Gossypium hirsutum HOM05D004350 ORTHO05D005260 6.1e-35 151.8 179 47.5
Gohir.D11G216900 Gossypium hirsutum HOM05D004350 ORTHO05D005260 6.1e-35 151.8 179 47.5
Gorai.007G233000 Gossypium raimondii HOM05D004350 ORTHO05D005260 6.1e-35 151.8 179 47.5
CiPaw.08G140000 Carya illinoinensis HOM05D004350 ORTHO05D005260 1.4e-34 150.6 179 46.4
Eucgr.K02898 Eucalyptus grandis HOM05D004350 ORTHO05D005260 1.4e-34 150.6 174 46.6
Glyma.18G146900 Glycine max HOM05D004350 ORTHO05D005260 1.4e-34 150.6 179 46.9
Cfa006886 Carpinus fangiana HOM05D004350 ORTHO05D005260 1.8e-34 150.2 179 46.9
Aqoxy5G01391 Aquilegia oxysepala HOM05D004350 ORTHO05D005260 3.0e-34 149.4 179 46.4
PSO017G6956 Papaver somniferum HOM05D004350 ORTHO05D005260 4.0e-34 149.1 179 45.8
PSO170G2632 Papaver somniferum HOM05D004350 ORTHO05D005260 4.0e-34 149.1 179 45.8
PSO170G6309 Papaver somniferum HOM05D004350 ORTHO05D005260 4.0e-34 149.1 179 45.8
Nn1g05564 Nelumbo nucifera HOM05D004350 ORTHO05D005260 5.2e-34 148.7 179 46.4
Lj4g0019109 Lotus japonicus HOM05D004350 ORTHO05D005260 6.7e-34 148.3 179 45.8
MD01G1038800 Malus domestica HOM05D004350 ORTHO05D005260 8.8e-34 147.9 179 46.4
TPR.G14596 Trifolium pratense HOM05D004350 ORTHO05D005260 8.8e-34 147.9 179 45.8
TAR381G0377 Trochodendron aralioides HOM05D004350 ORTHO05D005260 1.5e-33 147.1 174 46.6
GSVIVG01005931001 Vitis vinifera HOM05D004350 ORTHO05D005260 1.5e-33 147.1 174 45.4
Hma1.2p1_0433F.1_g152050 Hydrangea macrophylla HOM05D004350 ORTHO05D005260 2.0e-33 146.7 179 44.7
Potri.007G010900 Populus trichocarpa HOM05D004350 ORTHO05D005260 2.0e-33 146.7 179 45.3
Duzib264G0362 Durio zibethinus HOM05D004350 ORTHO05D005260 2.6e-33 146.4 184 45.1
Oeu003728.1 Olea europaea HOM05D004350 ORTHO05D005260 2.6e-33 146.4 179 44.7
Solyc04g014370.4 Solanum lycopersicum HOM05D004350 ORTHO05D005260 3.3e-33 146.0 179 46.9
Nn5g29888 Nelumbo nucifera HOM05D004350 ORTHO05D005260 4.4e-33 145.6 179 45.8
Prupe.6G201300 Prunus persica HOM05D004350 ORTHO05D005260 4.4e-33 145.6 179 46.4
Sc03g0000310 Simmondsia chinensis HOM05D004350 ORTHO05D005260 4.4e-33 145.6 179 45.8
vmacro18559 Vaccinium macrocarpon HOM05D004350 ORTHO05D005260 4.4e-33 145.6 179 44.1
VMungo0251G2520 Vigna mungo HOM05D004350 ORTHO05D005260 4.4e-33 145.6 179 46.4
Atru.chr3.1251 Acer truncatum HOM05D004350 ORTHO05D005260 5.7e-33 145.2 179 44.1
Cpa.g.sc55.29 Carica papaya HOM05D004350 ORTHO05D005260 5.7e-33 145.2 180 43.9
Hund16535 Selenicereus undatus HOM05D004350 ORTHO05D005260 5.7e-33 145.2 179 44.7
Duzib187G1704 Durio zibethinus HOM05D004350 ORTHO05D005260 7.5e-33 144.8 179 45.3
FvH4_1g19690 Fragaria vesca HOM05D004350 ORTHO05D005260 7.5e-33 144.8 179 45.3
FAN26G2403 Fragaria x ananassa HOM05D004350 ORTHO05D005260 7.5e-33 144.8 151 52.3
FAN23G0465 Fragaria x ananassa HOM05D004350 ORTHO05D005260 9.7e-33 144.4 151 52.3
BolC9t59459H Brassica oleracea HOM05D004350 ORTHO05D005260 1.3e-32 144.1 180 43.9
DCAR_014186 Daucus carota HOM05D004350 ORTHO05D005260 1.3e-32 144.1 155 49.0
Sopen04g006490 Solanum pennellii HOM05D004350 ORTHO05D005260 1.3e-32 144.1 179 46.4
TWI53G1737 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 1.7e-32 143.7 179 43.6
BraA10t44761Z Brassica rapa HOM05D004350 ORTHO05D005260 2.2e-32 143.3 179 43.6
PGSC0003DMG400023576 Solanum tuberosum HOM05D004350 ORTHO05D005260 2.2e-32 143.3 179 45.8
CANSAT01G3290 Cannabis sativa HOM05D004350 ORTHO05D005260 2.8e-32 142.9 179 43.6
PSO541G1644 Papaver somniferum HOM05D004350 ORTHO05D005260 2.8e-32 142.9 179 43.6
Phvul.002G147400 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 2.8e-32 142.9 179 44.1
Thecc.01G091200 Theobroma cacao HOM05D004350 ORTHO05D005260 2.8e-32 142.9 179 44.7
Ah.02g123600 Amaranthus hybridus HOM05D004350 ORTHO05D005260 3.7e-32 142.5 155 49.0
Cc07_g14130 Coffea canephora HOM05D004350 ORTHO05D005260 6.3e-32 141.7 179 44.1
Medtr8g471160 Medicago truncatula HOM05D004350 ORTHO05D005260 6.3e-32 141.7 179 44.7
BcaB01g05531 Brassica carinata HOM05D004350 ORTHO05D005260 8.2e-32 141.4 179 43.6
BcaB08g37102 Brassica carinata HOM05D004350 ORTHO05D005260 8.2e-32 141.4 179 43.6
CAN.G525.29 Capsicum annuum HOM05D004350 ORTHO05D005260 8.2e-32 141.4 178 44.9
TWI74G1117 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 8.2e-32 141.4 174 43.7
BcaB01g06282 Brassica carinata HOM05D004350 ORTHO05D005260 1.1e-31 141.0 179 43.6
Manes.13G099500 Manihot esculenta HOM05D004350 ORTHO05D005260 1.1e-31 141.0 179 43.6
Nitab4.5_0009469g0010 Nicotiana tabacum HOM05D004350 ORTHO05D005260 1.1e-31 141.0 179 44.7
C09p66790 Brassica napus HOM05D004350 ORTHO05D005260 1.4e-31 140.6 180 43.3
CiPaw.07G047800 Carya illinoinensis HOM05D004350 ORTHO05D005260 1.4e-31 140.6 173 44.5
CDE04G1055 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 1.4e-31 140.6 179 44.1
Thhalv10014620m.g Eutrema salsugineum HOM05D004350 ORTHO05D005260 1.4e-31 140.6 179 44.7
Oeu055598.1 Olea europaea HOM05D004350 ORTHO05D005260 1.4e-31 140.6 179 43.6
Sed0019313 Sechium edule HOM05D004350 ORTHO05D005260 1.4e-31 140.6 179 44.1
Actinidia30847 Actinidia chinensis HOM05D004350 ORTHO05D005260 1.8e-31 140.2 179 43.6
A03p04570 Brassica napus HOM05D004350 ORTHO05D005260 1.8e-31 140.2 179 43.6
A10p27090 Brassica napus HOM05D004350 ORTHO05D005260 1.8e-31 140.2 181 43.1
SalBow6G1994 Salvia bowleyana HOM05D004350 ORTHO05D005260 1.8e-31 140.2 179 41.9
THA.LOC104819292 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 1.8e-31 140.2 179 44.1
AL6G21000 Arabidopsis lyrata HOM05D004350 ORTHO05D005260 2.4e-31 139.8 179 44.7
AT5G10480 Arabidopsis thaliana HOM05D004350 ORTHO05D005260 2.4e-31 139.8 179 44.7
ClCG10G007720 Citrullus lanatus HOM05D004350 ORTHO05D005260 2.4e-31 139.8 155 46.5
FAN19G0871 Fragaria x ananassa HOM05D004350 ORTHO05D005260 2.4e-31 139.8 151 50.3
Sp6g32950 Schrenkiella parvula HOM05D004350 ORTHO05D005260 2.4e-31 139.8 179 43.6
ATR0767G219 Amborella trichopoda HOM05D004350 ORTHO05D005260 3.1e-31 139.4 181 42.0
Carub.0006s0896 Capsella rubella HOM05D004350 ORTHO05D005260 3.1e-31 139.4 179 44.7
CARHR202810 Cardamine hirsuta HOM05D004350 ORTHO05D005260 4.1e-31 139.0 175 43.4
Ca_22608_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 4.1e-31 139.0 179 45.3
CDE06G0701 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 5.3e-31 138.7 179 43.6
Nitab4.5_0001468g0120 Nicotiana tabacum HOM05D004350 ORTHO05D005260 5.3e-31 138.7 188 42.6
THA.LOC104798725 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 5.3e-31 138.7 179 43.6
VMungo1215G0627 Vigna mungo HOM05D004350 ORTHO05D005260 5.3e-31 138.7 179 43.6
CSS0009628 Camellia sinensis var. sinensis HOM05D004350 ORTHO05D005260 7.0e-31 138.3 179 43.0
CsaV3_3G006860 Cucumis sativus L. HOM05D004350 ORTHO05D005260 1.2e-30 137.5 179 43.0
EL10Ac6g15209 Beta vulgaris HOM05D004350 ORTHO05D005260 1.6e-30 137.1 174 44.8
Aa31LG3G16680 Aethionema arabicum HOM05D004350 ORTHO05D005260 2.0e-30 136.7 179 43.6
RcHm_v2.0_Chr2g0111251 Rosa chinensis HOM05D004350 ORTHO05D005260 3.5e-30 136.0 173 43.4
TAR625G1314 Trochodendron aralioides HOM05D004350 ORTHO05D005260 3.5e-30 136.0 143 48.3
AUR62003659 Chenopodium quinoa HOM05D004350 ORTHO05D005260 4.5e-30 135.6 178 42.7
SGA_v2.0_scaffold58G20514 Striga asiatica HOM05D004350 ORTHO05D005260 4.5e-30 135.6 179 41.9
HanXRQChr14g0442921 Helianthus annuus HOM05D004350 ORTHO05D005260 5.9e-30 135.2 179 42.5
Actinidia28826 Actinidia chinensis HOM05D004350 ORTHO05D005260 2.2e-29 133.3 179 41.9
Aa31LG5G22920 Aethionema arabicum HOM05D004350 ORTHO05D005260 3.8e-29 132.5 181 42.0
ECA238G4457 Erigeron canadensis HOM05D004350 ORTHO05D005260 6.5e-29 131.7 179 43.0
Nitab4.5_0000902g0360 Nicotiana tabacum HOM05D004350 ORTHO05D005260 6.5e-29 131.7 164 45.7
SGA_v2.0_scaffold32G13177 Striga asiatica HOM05D004350 ORTHO05D005260 6.5e-29 131.7 172 43.0
AagrBONN_evm.TU.Sc2ySwM_228.1037 Anthoceros agrestis HOM05D004350 ORTHO05D005260 2.5e-28 129.8 161 44.1
C03p05130 Brassica napus HOM05D004350 ORTHO05D005260 2.5e-28 129.8 189 40.2
HanXRQChr11g0346981 Helianthus annuus HOM05D004350 ORTHO05D005260 4.2e-28 129.0 179 40.8
Rhsim08G0016400 Rhododendron simsii HOM05D004350 ORTHO05D005260 1.6e-27 127.1 211 37.4
MELO3C016419.2 Cucumis melo HOM05D004350 ORTHO05D005260 3.6e-27 125.9 203 38.4
FAN28G1749 Fragaria x ananassa HOM05D004350 ORTHO05D005260 3.6e-27 125.9 159 46.5
Mapoly0034s0103 Marchantia polymorpha HOM05D004350 ORTHO05D005260 6.1e-27 125.2 176 43.2
Peaxi162Scf00196g00225 Petunia axillaris HOM05D004350 ORTHO05D005260 1.0e-26 124.4 150 46.0
Pp3c2_13410 Physcomitrium patens HOM05D004350 ORTHO05D005260 3.0e-26 122.9 163 43.6
Psat4g119600 Pisum sativum HOM05D004350 ORTHO05D005260 3.4e-25 119.4 154 45.5
QL06p035732 Quercus lobata HOM05D004350 ORTHO05D005260 3.4e-25 119.4 221 35.3
Sopen11g005390 Solanum pennellii HOM05D004350 ORTHO05D005260 4.8e-24 115.5 143 46.2
Haze_03867 Corylus avellana HOM05D004350 ORTHO05D005260 6.3e-24 115.2 166 42.8
Sabra07G0008400 Salix brachista HOM05D004350 ORTHO05D005260 1.8e-23 113.6 156 42.9
PSO170G6456 Papaver somniferum HOM05D004350 ORTHO05D005260 5.4e-23 112.1 154 42.2
Dinv36926 Davidia involucrata HOM05D004350 ORTHO05D005260 1.6e-22 110.5 153 42.5
SMO266G0038 Selaginella moellendorffii HOM05D004350 ORTHO05D005260 2.0e-22 110.2 177 39.5
BraA03t09799Z Brassica rapa HOM05D004350 ORTHO05D005260 5.9e-22 108.6 155 40.6
BolC3t13038H Brassica oleracea HOM05D004350 ORTHO05D005260 1.0e-21 107.8 155 40.0
Dinv13605 Davidia involucrata HOM05D004350 ORTHO05D005260 3.8e-21 105.9 145 41.4
Lsat_1_v5_gn_2_70580 Lactuca sativa HOM05D004350 ORTHO05D005260 1.1e-20 104.4 158 39.9
PSO170G2166 Papaver somniferum HOM05D004350 ORTHO05D005260 1.1e-20 104.4 148 41.9
Os08g0393600 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 4.2e-20 102.4 66 75.8
Ca_22603_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 5.5e-20 102.1 155 38.1
Nitab4.5_0004153g0110 Nicotiana tabacum HOM05D004350 ORTHO05D005260 1.0e-18 97.8 136 39.7
ECA246G1176 Erigeron canadensis HOM05D004350 ORTHO05D005260 2.3e-18 96.7 120 46.7
Migut.B00221 Erythranthe guttata HOM05D004350 ORTHO05D005260 2.3e-18 96.7 83 53.0
SEGI_08262 Sequoiadendron giganteum HOM05D004350 ORTHO05D005260 9.8e-17 91.3 60 63.3
Lju188A2T35 Lonicera japonica HOM05D004350 ORTHO05D005260 4.9e-16 89.0 52 75.0
Lsat_1_v5_gn_3_62861 Lactuca sativa HOM05D004350 ORTHO05D005260 1.7e-13 80.5 58 60.3
FAN19G1284 Fragaria x ananassa HOM05D004350 ORTHO05D005260 1.2e-11 74.3 61 60.7
MD15G1313000 Malus domestica HOM05D004350 ORTHO05D005260 2.1e-11 73.6 43 74.4
AUR62017968 Chenopodium quinoa HOM05D004350 ORTHO05D005260 3.0e-10 69.7 116 36.2
MD15G1312800 Malus domestica HOM05D004350 ORTHO05D005260 1.2e-09 67.8 61 54.1
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.3e-08 64.3 106 38.7
MCO16G529 Micromonas commoda HOM05D004350 ORTHO05D005260 1.7e-08 63.9 171 29.8
Cre03.g167924 Chlamydomonas reinhardtii HOM05D004350 ORTHO05D005260 2.9e-08 63.2 70 45.7
MD04G1039300 Malus domestica HOM05D004350 ORTHO05D005260 6.4e-08 62.0 61 49.2
Lsat_1_v5_gn_3_62901 Lactuca sativa HOM05D004350 ORTHO05D005260 8.3e-08 61.6 61 49.2
QL01p033425 Quercus lobata HOM05D007195 ORTHO05D008939 5.4e-07 58.9 170 31.2
AagrBONN_evm.TU.Sc2ySwM_344.4841 Anthoceros agrestis HOM05D007195 ORTHO05D008939 1.2e-06 57.8 146 31.5
arahy.Tifrunner.gnm1.ann1.H8MGJA Arachis hypogaea HOM05D004350 ORTHO05D005260 3.5e-06 56.2 81 44.4
MCO05G519 Micromonas commoda HOM05D004350 ORTHO05D008939 3.5e-06 56.2 93 36.6
Actinidia37244 Actinidia chinensis HOM05D007195 ORTHO05D008939 5.9e-06 55.5 162 28.4
RcHm_v2.0_Chr5g0062801 Rosa chinensis HOM05D007195 ORTHO05D008939 7.8e-06 55.1 163 28.8


User provided reference genes

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