Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 0.0e+00 1606.7 812 100.0
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 0.0e+00 1128.2 809 70.8
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1110.5 820 68.9
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 0.0e+00 1096.6 820 69.0
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 0.0e+00 1077.8 791 68.9
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1075.5 813 67.8
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 3.2e-310 1068.1 819 67.4
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 7.9e-309 1063.5 820 65.6
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 8.2e-306 1053.5 809 66.5
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 4.5e-304 1047.7 823 65.6
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 7.7e-304 1047.0 816 66.1
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 6.5e-303 1043.9 809 66.0
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 2.5e-302 1042.0 813 65.8
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 3.2e-302 1041.6 818 65.5
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 5.5e-302 1040.8 813 65.7
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 1.6e-301 1039.3 818 65.0
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.1e-301 1038.9 822 65.2
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 2.6e-299 1031.9 815 65.4
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 3.3e-299 1031.6 822 64.8
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 4.8e-298 1027.7 816 64.5
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 7.0e-297 1023.8 818 65.0
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 7.7e-296 1020.4 814 64.4
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 1.7e-295 1019.2 817 64.4
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.9e-295 1018.5 730 70.8
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 2.9e-295 1018.5 821 66.6
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 6.1e-293 1010.7 818 63.6
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-292 1009.6 813 64.1
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.3e-292 1008.8 813 64.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 3.3e-291 1005.0 812 64.4
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 9.7e-291 1003.4 821 62.5
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 3.7e-290 1001.5 818 63.2
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.8e-290 1001.1 813 63.5
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.4e-289 999.6 789 64.4
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.4e-289 998.8 816 63.4
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.2e-288 996.5 818 61.6
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 4.5e-288 994.6 823 63.2
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.5e-286 988.8 813 63.3
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.7e-285 985.3 814 62.9
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 4.7e-285 984.6 922 56.6
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 4.0e-284 981.5 826 62.1
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 3.4e-283 978.4 838 61.1
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.7e-283 977.6 818 61.7
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 4.1e-281 971.5 802 61.3
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 1.2e-280 969.9 812 62.4
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.7e-279 966.1 825 60.5
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.5e-278 961.1 829 60.9
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 9.4e-278 960.3 808 64.9
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.7e-277 958.7 738 66.8
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.4e-276 956.4 816 60.3
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 2.3e-276 955.7 820 61.0
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 9.8e-275 950.3 802 62.3
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 9.8e-275 950.3 795 62.6
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.7e-274 949.5 741 63.8
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 2.2e-274 949.1 879 59.0
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.8e-273 946.0 785 60.9
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.2e-272 943.3 797 60.6
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 2.7e-272 942.2 812 60.1
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.7e-271 939.5 790 61.6
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.7e-271 939.5 823 59.2
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 2.9e-271 938.7 813 59.7
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.6e-271 937.6 818 60.5
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 8.6e-271 937.2 795 62.0
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 5.6e-270 934.5 807 60.1
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.4e-268 929.9 827 59.4
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 3.0e-268 928.7 807 60.1
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 2.2e-266 922.5 828 58.8
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 5.0e-263 911.4 786 60.4
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.1e-262 910.2 802 58.7
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 3.3e-262 908.7 793 59.6
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 5.6e-262 907.9 818 60.1
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.6e-261 906.4 813 58.8
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.0e-260 903.7 794 59.3
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.8e-260 902.9 809 58.1
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 4.0e-260 901.7 787 59.3
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 5.2e-260 901.4 809 57.6
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 8.9e-260 900.6 820 58.0
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 4.4e-259 898.3 803 58.4
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 7.5e-259 897.5 802 58.2
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 3.2e-257 892.1 821 57.6
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 4.6e-256 888.3 835 56.0
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.7e-253 878.2 856 58.3
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.2e-251 873.6 819 56.7
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.9e-246 856.3 699 61.9
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.6e-243 845.9 816 55.4
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 2.7e-240 835.9 798 55.9
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 3.1e-236 822.4 823 54.6
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.2e-227 793.9 591 68.4
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 2.7e-224 782.7 610 66.1
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.2e-221 771.5 619 65.4
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.2e-221 771.5 619 65.4
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 3.1e-220 769.2 784 53.6
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-213 746.1 620 63.9
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 9.3e-209 731.1 796 51.6
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 3.6e-200 702.6 716 51.7
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 7.9e-200 701.4 625 59.5
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.3e-199 700.7 617 60.3
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.8e-181 639.8 813 45.4
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 2.0e-179 633.6 773 46.4
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 5.5e-169 599.0 725 46.3
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 3.0e-167 593.2 405 72.1
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.8e-165 585.9 490 64.7
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 2.8e-157 560.1 552 56.3
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 1.7e-141 507.7 468 55.3
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.5e-139 500.0 553 48.5
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 3.9e-138 496.5 399 66.2
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.6e-136 491.1 342 69.3
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.7e-136 489.6 339 69.3
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 3.1e-135 486.9 340 69.4
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.3e-130 470.7 393 64.6
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 9.2e-124 448.7 797 36.4
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 5.4e-116 422.9 786 37.2
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.1e-103 382.1 780 34.0
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 1.4e-100 371.7 482 47.7
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.9e-87 326.2 297 58.2
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 7.9e-83 312.8 456 39.3
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.2e-80 304.7 238 63.0
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 3.7e-80 303.9 276 58.7
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.3e-77 295.4 183 74.3
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 8.8e-74 282.7 377 46.7
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.1e-71 274.2 350 44.9
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 3.4e-70 270.8 864 28.4
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.9e-66 257.3 304 47.0
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.9e-61 241.1 198 57.6
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.0e-59 233.0 144 75.7
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 5.2e-58 230.3 225 50.2
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 4.8e-48 197.2 176 59.7
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.8e-48 197.2 169 68.0
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.5e-46 190.7 169 66.3
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.9e-45 188.0 161 60.2
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 2.3e-42 178.3 247 49.0
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.1e-39 167.5 211 42.7
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.9e-38 163.7 157 52.9
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 3.8e-37 161.0 215 46.5
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 4.0e-26 124.4 151 49.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 3.1e-18 98.2 803 21.4
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-18 98.2 116 42.2
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 7.3e-12 77.0 78 51.3
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.2e-10 70.9 43 72.1
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 2.6e-09 68.6 72 50.0
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 8.4e-08 63.5 326 21.2


User provided reference genes

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