Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 0.0e+00 2398.2 1275 100.0
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1203.7 1445 54.0
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1181.8 1442 53.4
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1147.5 1453 50.7
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1129.0 1467 51.2
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1124.4 1469 50.3
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1122.8 1455 51.9
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1106.7 1451 49.8
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1104.0 1437 50.2
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1096.3 1452 50.6
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1092.0 1425 50.0
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1078.2 1373 50.4
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 6.2e-308 1061.2 1479 47.1
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 1.2e-306 1057.0 1473 48.0
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 2.7e-303 1045.8 1413 49.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 1.7e-302 1043.1 1419 48.8
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 1.7e-302 1043.1 1432 48.3
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 6.6e-302 1041.2 1453 48.0
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 1.1e-301 1040.4 1340 50.3
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 1.5e-301 1040.0 1448 48.1
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 4.3e-301 1038.5 1395 48.9
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 6.2e-300 1034.6 1401 49.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 6.2e-300 1034.6 1390 49.8
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 3.1e-299 1032.3 1444 48.8
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 5.2e-299 1031.6 1440 48.7
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 6.8e-299 1031.2 1498 47.5
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 6.8e-299 1031.2 1427 48.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 2.0e-298 1029.6 1442 47.5
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 2.6e-298 1029.2 1476 48.0
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 5.8e-298 1028.1 1455 48.4
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 7.6e-298 1027.7 1442 47.0
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 2.9e-297 1025.8 1463 47.8
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 1.3e-294 1016.9 1502 46.3
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 3.9e-294 1015.4 1442 47.7
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 8.1e-292 1007.7 1462 47.1
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 1.8e-291 1006.5 1413 47.6
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 3.8e-289 998.8 1414 47.9
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-288 996.9 1261 51.3
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 7.1e-288 994.6 1444 47.0
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 1.6e-287 993.4 1418 47.7
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 2.3e-286 989.6 1441 46.6
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 2.3e-286 989.6 1433 47.1
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 3.3e-285 985.7 1476 45.9
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 3.3e-285 985.7 1425 47.1
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 7.3e-285 984.6 1424 47.0
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 3.6e-284 982.2 1534 44.9
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 4.8e-284 981.9 1461 45.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 6.2e-284 981.5 1448 47.0
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 8.1e-284 981.1 1376 48.0
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 2.4e-283 979.5 1424 46.2
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 2.4e-283 979.5 1328 48.7
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 5.3e-283 978.4 1428 46.4
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 6.9e-283 978.0 1424 47.5
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 9.0e-283 977.6 1430 46.5
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.2e-282 977.2 1426 46.2
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 1.2e-282 977.2 1428 46.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 4.5e-282 975.3 1351 48.4
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 4.5e-282 975.3 1345 48.7
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 2.9e-281 972.6 1395 47.5
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 4.2e-280 968.8 1442 46.0
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 5.4e-280 968.4 1447 45.9
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 1.3e-278 963.8 1438 45.9
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 6.7e-278 961.4 1408 47.0
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 9.6e-277 957.6 1410 46.5
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 9.6e-277 957.6 1378 47.3
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 1.6e-276 956.8 1433 46.0
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 1.4e-275 953.7 1419 45.9
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 2.4e-275 953.0 1423 46.3
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 1.2e-274 950.7 1453 46.2
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 1.9e-272 943.3 1408 46.9
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 2.1e-271 939.9 1445 46.2
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 2.7e-271 939.5 1442 44.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 1.0e-270 937.6 1429 45.3
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 1.1e-269 934.1 1472 45.1
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-269 933.7 1224 49.7
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.5e-269 932.9 1402 45.6
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 1.5e-266 923.7 1414 44.9
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 4.5e-266 922.2 1067 53.9
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 1.6e-263 913.7 1447 44.2
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 1.6e-263 913.7 1440 44.2
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 2.7e-263 912.9 1462 43.9
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 1.1e-261 907.5 1427 44.3
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 8.2e-260 901.4 1437 45.0
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 2.4e-259 899.8 1432 43.4
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 1.7e-257 893.6 1441 44.5
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 3.6e-255 885.9 1421 43.3
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 4.3e-253 879.0 1458 43.7
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 9.7e-253 877.9 1504 43.4
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 6.5e-249 865.1 1384 45.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 2.8e-244 849.7 1460 42.7
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 1.2e-242 844.3 1453 42.2
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 5.0e-241 839.0 1458 42.5
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 1.4e-238 830.9 1449 42.0
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 2.3e-238 830.1 1458 42.4
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 2.3e-238 830.1 1463 41.6
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 3.3e-237 826.2 1467 41.9
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 2.2e-236 823.5 1444 42.1
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 4.1e-235 819.3 1465 41.3
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 5.9e-234 815.5 1475 41.5
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 1.7e-233 813.9 1446 42.0
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 1.7e-233 813.9 1446 42.0
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 2.2e-233 813.5 1437 41.9
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 2.2e-233 813.5 1320 44.5
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 5.0e-233 812.4 1471 41.3
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 8.5e-233 811.6 1445 41.9
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 1.5e-232 810.8 1435 41.5
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 9.4e-232 808.1 1480 41.5
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 1.2e-231 807.7 1447 41.3
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 2.7e-231 806.6 1449 41.5
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 2.3e-230 803.5 1443 41.9
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 2.6e-229 800.0 1369 42.5
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 5.2e-206 722.6 937 49.6
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 4.9e-204 716.1 1423 38.3
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 6.0e-202 709.1 1379 38.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 6.4e-196 689.1 972 47.2
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 8.3e-196 688.7 818 52.4
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 5.6e-192 676.0 921 46.9
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.6e-189 665.6 785 51.2
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 1.7e-169 601.3 1351 36.0
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 1.7e-169 601.3 1351 36.0
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 1.6e-167 594.7 1416 35.9
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 5.4e-163 579.7 1360 36.0
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 2.2e-156 557.8 1344 34.7
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 1.6e-154 551.6 1300 35.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 7.9e-146 522.7 600 54.8
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.9e-129 467.2 860 39.5
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.0e-120 438.3 933 36.1
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.7e-112 410.2 472 54.2
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 5.6e-91 340.5 480 49.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.6e-77 295.8 347 53.0
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.6e-72 278.5 426 43.0
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.9e-70 272.3 575 35.7
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.4e-70 271.9 424 41.0
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 8.6e-68 263.5 426 43.2
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 4.9e-47 194.5 319 45.8
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.2e-46 191.4 221 49.8
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.2e-40 173.3 175 55.4
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.2e-37 163.3 242 47.9
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.5e-35 156.4 553 30.6
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.9e-30 139.4 474 32.3
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.9e-22 112.8 743 23.0
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 7.2e-22 110.9 291 35.1
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.6e-16 92.4 194 32.5
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.5e-16 91.7 214 35.0
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.9e-15 89.0 66 65.2
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.4e-14 86.7 282 27.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.7e-13 82.4 182 36.3
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 6.7e-12 77.8 100 46.0
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 6.7e-12 77.8 481 26.6
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 4.8e-10 71.6 63 55.6
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.4e-09 70.1 87 48.3
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.2e-08 67.0 49 61.2
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 2.6e-08 65.9 47 66.0
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.7e-07 63.2 95 43.2


User provided reference genes

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