Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052453.1 Olea europaea HOM05D003878 ORTHO05D003857 2.7e-22 107.8 56 100.0
TAR369G0188 Trochodendron aralioides HOM05D003878 ORTHO05D003857 2.0e-14 81.6 52 76.9
Actinidia19020 Actinidia chinensis HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 78.8
Actinidia35011 Actinidia chinensis HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 78.8
Ciclev10019534m.g Citrus clementina HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 76.9
Medtr4g108880 Medicago truncatula HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 76.9
Psat4g049800 Pisum sativum HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 76.9
Potri.015G061900 Populus trichocarpa HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 78.8
Sabra15G0086900 Salix brachista HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 78.8
Thecc.03G093700 Theobroma cacao HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 78.8
TPR.G11840 Trifolium pratense HOM05D003878 ORTHO05D003857 6.0e-14 80.1 52 76.9
CANSAT80G1069 Cannabis sativa HOM05D003878 ORTHO05D003857 7.8e-14 79.7 52 75.0
Duzib205G1832 Durio zibethinus HOM05D003878 ORTHO05D003857 7.8e-14 79.7 52 76.9
Medtr3g037390 Medicago truncatula HOM05D003878 ORTHO05D003857 7.8e-14 79.7 52 75.0
TAR625G0726 Trochodendron aralioides HOM05D003878 ORTHO05D003857 7.8e-14 79.7 52 75.0
vmacro16524 Vaccinium macrocarpon HOM05D003878 ORTHO05D003857 7.8e-14 79.7 52 76.9
arahy.Tifrunner.gnm1.ann1.2F1UPX Arachis hypogaea HOM05D003878 ORTHO05D003857 1.0e-13 79.3 52 76.9
arahy.Tifrunner.gnm1.ann1.D90B1M Arachis hypogaea HOM05D003878 ORTHO05D003857 1.0e-13 79.3 52 76.9
Atru.chr9.336 Acer truncatum HOM05D003878 ORTHO05D003857 1.3e-13 79.0 52 76.9
Duzib068G0503 Durio zibethinus HOM05D003878 ORTHO05D003857 1.3e-13 79.0 52 75.0
Glyma.06G196200 Glycine max HOM05D003878 ORTHO05D003857 1.3e-13 79.0 52 76.9
Manes.14G081500 Manihot esculenta HOM05D003878 ORTHO05D003857 1.3e-13 79.0 52 76.9
Psat5g199360 Pisum sativum HOM05D003878 ORTHO05D003857 1.3e-13 79.0 52 75.0
PGR062G0001 Punica granatum HOM05D003878 ORTHO05D003857 1.3e-13 79.0 52 76.9
PGR083G0168 Punica granatum HOM05D003878 ORTHO05D003857 1.3e-13 79.0 52 76.9
CSS0032055 Camellia sinensis var. sinensis HOM05D003878 ORTHO05D003857 1.7e-13 78.6 52 76.9
Eucgr.B00537 Eucalyptus grandis HOM05D003878 ORTHO05D003857 1.7e-13 78.6 52 75.0
Lalb_Chr08g0235491 Lupinus albus HOM05D003878 ORTHO05D003857 1.7e-13 78.6 52 76.9
Phvul.009G185500 Phaseolus vulgaris HOM05D003878 ORTHO05D003857 1.7e-13 78.6 52 75.0
TPR.G681 Trifolium pratense HOM05D003878 ORTHO05D003857 1.7e-13 78.6 52 75.0
TWI60G1095 Tripterygium wilfordii HOM05D003878 ORTHO05D003857 1.7e-13 78.6 52 76.9
VMungo1309G1477 Vigna mungo HOM05D003878 ORTHO05D003857 1.7e-13 78.6 52 75.0
COL.COLO4_36941 Corchorus olitorius HOM05D003878 ORTHO05D003857 2.3e-13 78.2 52 75.0
Dinv38743 Davidia involucrata HOM05D003878 ORTHO05D003857 2.3e-13 78.2 52 75.0
ECA247G3052 Erigeron canadensis HOM05D003878 ORTHO05D003857 2.3e-13 78.2 52 73.1
TAR623G0526 Trochodendron aralioides HOM05D003878 ORTHO05D003857 2.3e-13 78.2 52 75.0
Ca_21808_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 3.0e-13 77.8 52 73.1
Glyma.05G025000 Glycine max HOM05D003878 ORTHO05D003857 3.0e-13 77.8 52 76.9
Glyma.17G102200 Glycine max HOM05D003878 ORTHO05D003857 3.0e-13 77.8 52 76.9
VMungo1215G0660 Vigna mungo HOM05D003878 ORTHO05D003857 3.0e-13 77.8 52 76.9
GSVIVG01007965001 Vitis vinifera HOM05D003878 ORTHO05D003857 3.0e-13 77.8 52 73.1
CSS0027901 Camellia sinensis var. sinensis HOM05D003878 ORTHO05D003857 3.9e-13 77.4 52 75.0
Cfa018911 Carpinus fangiana HOM05D003878 ORTHO05D003857 3.9e-13 77.4 52 75.0
Ca_14691_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 3.9e-13 77.4 52 75.0
Ca_30947_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 3.9e-13 77.4 52 75.0
Haze_07295 Corylus avellana HOM05D001764 ORTHO05D003857 3.9e-13 77.4 52 75.0
CiPaw.11G047100 Carya illinoinensis HOM05D003878 ORTHO05D003857 5.0e-13 77.0 52 75.0
Glyma.04G166300 Glycine max HOM05D003878 ORTHO05D003857 5.0e-13 77.0 52 73.1
Lj9C466G6 Lonicera japonica HOM05D003878 ORTHO05D003857 5.0e-13 77.0 52 75.0
Nn2g10380 Nelumbo nucifera HOM05D003878 ORTHO05D003857 5.0e-13 77.0 52 71.2
Hund09823 Selenicereus undatus HOM05D003878 ORTHO05D003857 5.0e-13 77.0 52 75.0
THA.LOC104801462 Tarenaya hassleriana HOM05D003878 ORTHO05D003857 5.0e-13 77.0 52 73.1
Zm00001eb184870 Zea mays HOM05D020494 ORTHO05D003857 5.0e-13 77.0 52 71.2
Zm00001eb247330 Zea mays HOM05D003878 ORTHO05D003857 5.0e-13 77.0 52 71.2
Dinv10655 Davidia involucrata HOM05D003878 ORTHO05D003857 6.6e-13 76.6 52 73.1
MBI05_g41786_MAGBIO Magnolia biondii HOM05D003878 ORTHO05D003857 6.6e-13 76.6 52 71.2
HanXRQChr02g0043181 Helianthus annuus HOM05D003878 ORTHO05D003857 8.6e-13 76.3 52 73.1
Hma1.2p1_0322F.1_g125070 Hydrangea macrophylla HOM05D003878 ORTHO05D003857 8.6e-13 76.3 52 73.1
Oeu047002.2 Olea europaea HOM05D003878 ORTHO05D003857 8.6e-13 76.3 52 73.1
QL10p017674 Quercus lobata HOM05D003878 ORTHO05D003857 8.6e-13 76.3 52 73.1
Sc12g0006500 Simmondsia chinensis HOM05D003878 ORTHO05D003857 8.6e-13 76.3 52 75.0
SGA_v2.0_scaffold25G10935 Striga asiatica HOM05D001764 ORTHO05D001946 8.6e-13 76.3 52 73.1
Ah.11g048230 Amaranthus hybridus HOM05D003878 ORTHO05D003857 1.1e-12 75.9 52 71.2
Os02g0618200 Oryza sativa ssp. japonica HOM05D003878 ORTHO05D003857 1.1e-12 75.9 52 69.2
TWI15G0625 Tripterygium wilfordii HOM05D003878 ORTHO05D003857 1.1e-12 75.9 52 75.0
TAR629G1644 Trochodendron aralioides HOM05D003878 ORTHO05D003857 1.1e-12 75.9 52 73.1
ClCG04G012090 Citrullus lanatus HOM05D003878 ORTHO05D003857 1.5e-12 75.5 52 73.1
MELO3C001999.2 Cucumis melo HOM05D003878 ORTHO05D003857 1.5e-12 75.5 52 73.1
CsaV3_1G005680 Cucumis sativus L. HOM05D003878 ORTHO05D003857 1.5e-12 75.5 52 73.1
Manes.06G089800 Manihot esculenta HOM05D003878 ORTHO05D003857 1.5e-12 75.5 52 71.2
Nn5g26927 Nelumbo nucifera HOM05D003878 ORTHO05D003857 1.9e-12 75.1 52 73.1
PSO063G5546 Papaver somniferum HOM05D003878 ORTHO05D003857 1.9e-12 75.1 52 71.2
PSO198G0128 Papaver somniferum HOM05D003878 ORTHO05D003857 1.9e-12 75.1 52 71.2
Sed0008795 Sechium edule HOM05D003878 ORTHO05D003857 1.9e-12 75.1 52 71.2
unitig_0.g775 Utricularia gibba HOM05D003878 ORTHO05D003857 1.9e-12 75.1 52 73.1
Cc04_g14990 Coffea canephora HOM05D003878 ORTHO05D003857 2.5e-12 74.7 52 71.2
MD14G1204700 Malus domestica HOM05D003878 ORTHO05D003857 2.5e-12 74.7 52 71.2
Solyc06g069690.4 Solanum lycopersicum HOM05D003878 ORTHO05D003857 2.5e-12 74.7 52 69.2
Sopen06g026990 Solanum pennellii HOM05D003878 ORTHO05D003857 2.5e-12 74.7 52 69.2
MSTRG.4440 Avicennia marina HOM05D003878 ORTHO05D003857 3.3e-12 74.3 52 69.2
DCAR_016576 Daucus carota HOM05D003878 ORTHO05D003857 3.3e-12 74.3 52 71.2
Aa31LG11G2040 Aethionema arabicum HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
Ah.02g113730 Amaranthus hybridus HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
AL8G38050 Arabidopsis lyrata HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
AT5G61380 Arabidopsis thaliana HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
BcaB04g19909 Brassica carinata HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
BcaC04g23454 Brassica carinata HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
BcaC06g33245 Brassica carinata HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
A03p46980 Brassica napus HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
C07p45020 Brassica napus HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
C09p08170 Brassica napus HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
BolC7t45025H Brassica oleracea HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
BolC9t53729H Brassica oleracea HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
BraA03t13822Z Brassica rapa HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
BraA09t36379Z Brassica rapa HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
Carub.0008s2205 Capsella rubella HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
CARHR275140 Cardamine hirsuta HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
Thhalv10003924m.g Eutrema salsugineum HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
Lj4g0002884 Lotus japonicus HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
Sp2g24590 Schrenkiella parvula HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 69.2
Sed0015977 Sechium edule HOM05D003878 ORTHO05D003857 4.3e-12 73.9 52 71.2
Gohir.A03G067700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 71.2
Gohir.D03G094200 Gossypium hirsutum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 71.2
Gohir.D07G083200 Gossypium hirsutum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 71.2
Gohir.D13G087700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 71.2
Gorai.003G098300 Gossypium raimondii HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 71.2
Gorai.005G145700 Gossypium raimondii HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 71.2
Nitab4.5_0001211g0280 Nicotiana tabacum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 69.2
Nitab4.5_0005900g0090 Nicotiana tabacum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 69.2
Solyc03g115770.3 Solanum lycopersicum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 69.2
Sopen03g034750 Solanum pennellii HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 69.2
PGSC0003DMG400019518 Solanum tuberosum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 69.2
PGSC0003DMG400033048 Solanum tuberosum HOM05D003878 ORTHO05D003857 5.6e-12 73.6 52 69.2
Actinidia37611 Actinidia chinensis HOM05D003878 ORTHO05D003857 7.3e-12 73.2 52 71.2
FvH4_5g14560 Fragaria vesca HOM05D003878 ORTHO05D003857 7.3e-12 73.2 52 71.2
FAN08G1337 Fragaria x ananassa HOM05D003878 ORTHO05D003857 7.3e-12 73.2 52 71.2
FAN13G2746 Fragaria x ananassa HOM05D003878 ORTHO05D003857 7.3e-12 73.2 52 71.2
Oeu006383.1 Olea europaea HOM05D003878 ORTHO05D003857 7.3e-12 73.2 52 71.2
Prupe.5G198000 Prunus persica HOM05D003878 ORTHO05D003857 7.3e-12 73.2 52 69.2
RcHm_v2.0_Chr7g0182001 Rosa chinensis HOM05D003878 ORTHO05D003857 7.3e-12 73.2 52 71.2
Migut.D01764 Erythranthe guttata HOM05D003878 ORTHO05D003857 1.2e-11 72.4 52 69.2
MD06G1197300 Malus domestica HOM05D003878 ORTHO05D003857 1.2e-11 72.4 52 67.3
Aqoxy3G03485 Aquilegia oxysepala HOM05D003878 ORTHO05D003857 1.6e-11 72.0 52 67.3
Migut.I00209 Erythranthe guttata HOM05D003878 ORTHO05D003857 1.6e-11 72.0 52 67.3
CDE09G1270 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 2.1e-11 71.6 52 65.4
FAN18G1413 Fragaria x ananassa HOM05D003878 ORTHO05D003857 2.1e-11 71.6 52 69.2
Gohir.D11G114700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 2.1e-11 71.6 52 69.2
Prupe.5G197900 Prunus persica HOM05D003878 ORTHO05D003857 2.1e-11 71.6 52 69.2
ATR0680G414 Amborella trichopoda HOM05D003878 ORTHO05D003857 2.8e-11 71.2 52 63.5
Lsat_1_v5_gn_1_14320 Lactuca sativa HOM05D003878 ORTHO05D003857 2.8e-11 71.2 52 69.2
Gohir.D11G294700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 3.6e-11 70.9 52 69.2
Gorai.007G317900 Gossypium raimondii HOM05D003878 ORTHO05D003857 3.6e-11 70.9 52 69.2
Gorai.001G126800 Gossypium raimondii HOM05D003878 ORTHO05D003857 4.7e-11 70.5 52 69.2
CDE07G1945 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 1.1e-10 69.3 52 63.5
PSO017G0340 Papaver somniferum HOM05D003878 ORTHO05D003857 1.1e-10 69.3 52 65.4
PSO478G1572 Papaver somniferum HOM05D003878 ORTHO05D003857 1.1e-10 69.3 52 65.4
SEGI_11051 Sequoiadendron giganteum HOM05D003878 ORTHO05D003857 1.8e-10 68.6 52 59.6
SMO358G0608 Selaginella moellendorffii HOM05D003878 ORTHO05D003857 2.3e-10 68.2 52 55.8
Rhsim12G0154100 Rhododendron simsii HOM05D003878 ORTHO05D003857 6.8e-10 66.6 41 78.0
Lj5A108G51 Lonicera japonica HOM05D003878 ORTHO05D003857 1.2e-09 65.9 52 65.4
HanXRQChr08g0236661 Helianthus annuus HOM05D003878 ORTHO05D003857 1.5e-09 65.5 52 69.2
HPP92_009069 Vanilla planifolia HOM05D003878 ORTHO05D003857 1.5e-09 65.5 52 59.6
Mapoly0085s0081 Marchantia polymorpha HOM05D003878 ORTHO05D003857 2.0e-09 65.1 52 55.8
SalBow7G4352 Salvia bowleyana HOM05D003878 ORTHO05D003857 3.4e-09 64.3 52 63.5
AUR62021636 Chenopodium quinoa HOM05D003878 ORTHO05D003857 7.5e-09 63.2 52 63.5
GSVIVG01007970001 Vitis vinifera HOM05D003878 ORTHO05D003857 2.9e-08 61.2 52 51.9
EL10Ac5g11059 Beta vulgaris HOM05D003878 ORTHO05D003857 4.9e-08 60.5 79 46.8
MSTRG.9618 Avicennia marina HOM05D003878 ORTHO05D003857 2.4e-07 58.2 52 55.8
Migut.D01765 Erythranthe guttata HOM05D003878 ORTHO05D003857 1.2e-06 55.8 52 55.8
Medtr3g037400 Medicago truncatula HOM05D008161 ORTHO05D001771 1.2e-06 55.8 55 58.2
CAN.G587.10 Capsicum annuum HOM05D000541 ORTHO05D000137 1.6e-06 55.5 52 50.0


User provided reference genes

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