Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1127.5 555 100.0
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1100.9 564 95.9
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 7.1e-309 1063.1 585 89.6
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 1.2e-308 1062.4 564 92.2
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.6e-308 1062.0 564 92.7
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 1.0e-307 1059.3 564 91.5
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.3e-307 1058.1 564 91.7
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 2.3e-307 1058.1 563 92.0
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 2.3e-307 1058.1 563 92.0
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 3.0e-307 1057.7 562 91.8
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 3.9e-307 1057.4 564 91.8
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 5.1e-307 1057.0 564 91.1
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 5.1e-307 1057.0 565 91.9
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 8.6e-307 1056.2 563 91.7
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 3.3e-306 1054.3 562 91.6
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 3.3e-306 1054.3 564 91.0
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 4.3e-306 1053.9 565 91.5
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 7.3e-306 1053.1 565 91.7
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.2e-305 1052.4 564 91.1
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.2e-305 1052.4 564 91.3
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.6e-305 1052.0 565 91.3
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.6e-305 1052.0 559 92.1
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 1.6e-305 1052.0 562 91.1
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.8e-305 1051.2 564 91.5
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 6.2e-305 1050.0 562 91.1
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 6.2e-305 1050.0 562 91.3
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.8e-304 1048.5 559 91.8
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 565 91.2
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 562 90.7
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 6.9e-304 1046.6 562 91.1
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 6.9e-304 1046.6 563 90.9
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 8.9e-304 1046.2 563 89.9
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 8.9e-304 1046.2 562 90.7
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.2e-303 1045.8 561 90.6
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 1.5e-303 1045.4 562 90.7
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.0e-303 1045.0 566 90.6
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 3.4e-303 1044.3 565 90.6
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 3.4e-303 1044.3 562 90.9
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 5.8e-303 1043.5 563 89.5
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 5.8e-303 1043.5 562 90.7
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 5.8e-303 1043.5 565 90.3
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 5.8e-303 1043.5 559 91.2
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 7.6e-303 1043.1 564 90.8
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 9.9e-303 1042.7 562 90.7
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.3e-302 1042.3 566 89.8
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 1.3e-302 1042.3 560 90.5
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 2.9e-302 1041.2 563 90.6
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.9e-302 1041.2 562 89.9
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 3.8e-302 1040.8 563 90.8
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 3.8e-302 1040.8 559 90.9
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 6.4e-302 1040.0 563 90.4
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 8.4e-302 1039.6 565 90.4
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 8.4e-302 1039.6 562 90.2
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.1e-301 1039.3 563 90.4
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-301 1038.9 565 89.9
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 1.9e-301 1038.5 567 89.9
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.4e-301 1038.1 597 86.3
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.4e-301 1036.9 566 89.6
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.4e-301 1036.9 566 89.6
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 9.3e-301 1036.2 564 89.7
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 9.3e-301 1036.2 566 89.4
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 9.3e-301 1036.2 560 90.4
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.2e-300 1035.8 568 89.3
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.6e-300 1035.4 563 89.5
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 1.6e-300 1035.4 566 89.4
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 4.6e-300 1033.9 581 87.4
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 6.0e-300 1033.5 565 89.0
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.7e-299 1031.9 567 89.2
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 2.3e-299 1031.6 619 83.5
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 8.7e-299 1029.6 565 88.7
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.5e-298 1028.9 564 88.8
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 1.5e-298 1028.9 564 88.7
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.5e-298 1028.9 564 89.0
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.9e-298 1028.5 564 88.7
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 1.9e-298 1028.5 568 88.7
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 4.3e-298 1027.3 564 88.5
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 4.3e-298 1027.3 564 88.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 7.3e-298 1026.5 564 88.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 7.3e-298 1026.5 564 88.5
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 2.8e-297 1024.6 558 88.2
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.8e-296 1021.9 599 85.3
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.8e-296 1021.9 571 88.1
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.2e-295 1019.2 553 89.7
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.2e-295 1019.2 572 87.8
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 7.6e-295 1016.5 565 87.8
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 7.6e-295 1016.5 575 88.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 4.6e-292 1007.3 560 87.9
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 2.3e-291 1005.0 555 86.5
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 9.6e-290 999.6 521 93.1
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.8e-286 987.6 562 84.9
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.6e-284 980.7 557 84.2
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.6e-284 980.7 557 84.2
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.6e-279 964.9 561 85.4
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.9e-278 961.4 539 85.0
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 5.7e-274 947.2 521 87.9
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.6e-268 927.9 496 91.1
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.8e-267 925.6 489 91.0
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.6e-255 885.2 456 93.2
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 4.5e-255 884.4 540 78.9
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 2.1e-252 875.5 564 78.5
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 6.3e-241 837.4 548 74.8
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.6e-231 806.2 564 73.6
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.8e-227 792.7 566 73.5
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.0e-227 792.0 411 93.9
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 5.7e-226 787.7 552 74.1
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.2e-225 785.8 408 92.6
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 3.1e-224 781.9 514 78.2
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.8e-223 777.3 514 77.8
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.3e-221 770.8 488 76.4
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.6e-220 769.6 525 75.0
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 5.2e-219 764.6 389 95.6
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.4e-218 761.5 564 70.6
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.3e-214 750.0 564 71.8
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 5.2e-203 711.4 549 66.7
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.6e-183 645.2 502 67.9
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 2.5e-181 639.4 331 92.4
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.2e-162 577.4 312 88.1
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 7.6e-154 548.1 546 57.3
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.6e-151 540.4 511 58.7
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.0e-137 494.6 263 90.1
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.5e-136 490.0 300 82.3
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.1e-131 473.0 462 56.3
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.0e-129 465.7 258 90.3
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.2e-127 461.1 554 50.0
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.3e-126 456.8 284 79.9
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.0e-122 443.7 364 61.8
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 5.9e-122 442.2 376 62.8
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 2.2e-121 440.3 570 48.2
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.6e-117 426.8 504 50.2
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 7.0e-115 418.7 341 64.5
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 7.0e-115 418.7 237 89.5
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 7.8e-106 388.7 196 92.9
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.0e-98 362.5 258 71.7
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-95 354.4 246 74.0
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.4e-91 340.5 166 97.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.7e-90 337.0 183 85.2
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.3e-89 334.0 305 62.3
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.2e-87 325.9 214 74.8
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 4.0e-86 323.2 158 96.2
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-83 312.8 326 57.1
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 7.8e-74 282.3 160 83.1
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 2.3e-73 280.8 176 82.4
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 3.0e-73 280.4 158 84.8
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.5e-66 256.9 159 81.1
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 7.3e-64 249.2 152 82.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.9e-51 208.0 133 77.4
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 4.6e-50 203.4 123 82.9
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 3.7e-47 193.7 105 86.7
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.8e-46 191.4 138 71.0
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 8.4e-44 182.6 113 80.5
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 3.5e-42 177.2 270 42.2
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 8.8e-33 146.0 98 75.5
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 2.0e-29 134.8 143 54.5
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.4e-27 128.6 73 89.0
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-27 127.9 75 84.0
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 4.1e-22 110.5 86 70.9
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-16 91.7 46 93.5
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-16 91.7 46 93.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 7.4e-16 89.7 52 82.7
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 8.2e-15 86.3 43 88.4
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-14 85.5 63 66.7
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 4.1e-14 84.0 49 79.6
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-14 84.0 59 69.5
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 4.2e-11 73.9 60 70.0
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 7.2e-11 73.2 49 77.6
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.6e-10 70.9 88 51.1
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 1.8e-06 58.5 51 66.7


User provided reference genes

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