Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 8.7e-65 250.0 112 100.0
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 2.1e-42 175.6 112 67.9
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 5.1e-41 171.0 113 69.0
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 1.1e-40 169.9 112 64.3
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.9e-40 169.1 112 62.5
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 2.5e-40 168.7 112 64.3
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 2.5e-40 168.7 112 64.3
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 4.3e-40 167.9 112 63.4
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.3e-40 167.9 112 64.3
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 7.4e-40 167.2 112 63.4
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-39 166.4 113 63.7
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-39 166.4 113 63.7
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-39 166.4 113 63.7
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-39 166.4 113 63.7
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 2.4e-38 162.2 113 61.9
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 5.3e-38 161.0 112 60.7
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 5.3e-38 161.0 112 60.7
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 6.9e-38 160.6 112 58.9
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 6.9e-38 160.6 112 58.9
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 6.9e-38 160.6 112 62.5
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 9.1e-38 160.2 112 58.9
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 1.2e-37 159.8 112 58.9
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.2e-37 159.8 114 64.0
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.5e-37 159.5 112 60.7
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 2.6e-37 158.7 112 59.8
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 2.6e-37 158.7 112 59.8
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 4.5e-37 157.9 110 60.9
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 5.9e-37 157.5 112 62.5
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 7.7e-37 157.1 112 57.1
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 7.7e-37 157.1 112 57.1
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 1.0e-36 156.8 110 60.0
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 2.2e-36 155.6 113 62.8
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 2.2e-36 155.6 112 59.8
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.2e-36 155.6 113 61.9
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 2.9e-36 155.2 113 61.1
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 2.9e-36 155.2 112 59.8
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 2.9e-36 155.2 112 58.0
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 3.8e-36 154.8 110 60.9
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 5.0e-36 154.5 113 61.1
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 6.5e-36 154.1 113 61.9
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 1.1e-35 153.3 112 58.9
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.4e-35 152.9 113 60.2
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.4e-35 152.9 113 60.2
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 1.9e-35 152.5 113 61.1
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.5e-35 152.1 113 60.2
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 2.5e-35 152.1 113 58.4
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 3.2e-35 151.8 113 59.3
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 7.2e-35 150.6 112 57.1
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 9.4e-35 150.2 110 56.4
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 1.2e-34 149.8 110 56.4
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 1.6e-34 149.4 113 57.5
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 4.7e-34 147.9 115 59.1
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.1e-34 147.5 113 58.4
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.4e-33 146.4 102 58.8
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 3.0e-33 145.2 113 56.6
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 3.9e-33 144.8 113 59.3
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 8.8e-33 143.7 110 55.5
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 7.4e-32 140.6 113 58.4
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 2.2e-31 139.0 91 65.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 3.7e-31 138.3 103 58.3
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 3.7e-31 138.3 108 57.4
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 4.8e-31 137.9 108 58.3
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 6.3e-31 137.5 113 54.0
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 8.2e-31 137.1 112 50.0
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 2.4e-30 135.6 113 55.8
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 9.1e-30 133.7 116 50.0
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.2e-29 133.3 108 55.6
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 108 55.6
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 108 55.6
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 108 55.6
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 108 55.6
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 108 55.6
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.2e-29 133.3 108 55.6
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 1.2e-29 133.3 110 51.8
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 2.0e-29 132.5 115 50.4
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 2.0e-29 132.5 112 51.8
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 1.0e-28 130.2 108 53.7
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 2.2e-28 129.0 112 54.5
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.8e-28 128.3 112 52.7
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.1e-27 126.7 113 50.4
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 4.2e-27 124.8 104 56.7
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 4.2e-27 124.8 113 52.2
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 52.2
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 52.2
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 52.2
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 9.4e-27 123.6 114 53.5
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.6e-26 122.9 112 51.8
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 4.7e-26 121.3 113 51.3
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 1.8e-25 119.4 112 50.9
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 3.0e-25 118.6 112 50.0
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 5.2e-25 117.9 112 50.9
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 5.2e-25 117.9 112 53.6
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 49.1
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 48.2
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 1.1e-24 116.7 112 48.2
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 48.2
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 48.2
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 48.2
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 48.2
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 48.2
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 48.2
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 1.5e-24 116.3 112 48.2
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.5e-24 116.3 112 50.9
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 2.0e-24 115.9 112 48.2
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 3.3e-24 115.2 112 50.0
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 4.4e-24 114.8 113 46.0
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 9.7e-24 113.6 112 47.3
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 9.7e-24 113.6 81 55.6
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 9.7e-24 113.6 86 53.5
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.3e-23 113.2 113 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.7e-23 112.8 112 48.2
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 2.2e-23 112.5 111 45.9
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 8.2e-23 110.5 139 43.9
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.1e-22 110.2 112 46.4
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.0e-21 105.9 108 46.3
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 3.8e-20 101.7 109 44.0
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 3.8e-20 101.7 66 63.6
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.1e-19 100.1 113 46.0
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 1.5e-19 99.8 111 41.4
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 5.5e-19 97.8 98 45.9
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 7.2e-19 97.4 68 57.4
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 8.0e-18 94.0 66 63.6
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.2e-16 90.1 76 47.4
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 4.4e-16 88.2 79 48.1
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 4.8e-15 84.7 55 67.3
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.1e-14 83.6 68 57.4
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.0e-13 79.3 113 40.7
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 7.7e-13 77.4 68 52.9
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 2.2e-12 75.9 71 46.5
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 6.1e-10 67.8 114 34.2
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 1.8e-09 66.2 96 37.5
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 3.4e-08 62.0 66 45.5
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.4e-08 61.6 111 32.4
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 5.7e-08 61.2 106 31.1
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.7e-07 59.7 123 29.3
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.8e-07 58.9 111 32.4
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 4.8e-07 58.2 101 31.7
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 4.8e-07 58.2 114 31.6
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 1.1e-06 57.0 114 31.6
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 2.4e-06 55.8 101 30.7
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 4.1e-06 55.1 110 31.8
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 4.1e-06 55.1 103 30.1
EL10Ac3g06123 Beta vulgaris HOM05D002276 ORTHO05D002381 5.4e-06 54.7 82 36.6
Cfa021026 Carpinus fangiana HOM05D002276 ORTHO05D002381 9.1e-06 53.9 77 32.5


User provided reference genes

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