Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.1e-144 516.5 257 100.0
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 7.8e-93 344.4 260 71.5
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.5e-91 340.1 257 70.8
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.5e-91 340.1 260 70.4
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.0e-89 334.0 257 70.0
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.0e-89 334.0 257 70.0
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 3.1e-89 332.4 252 69.4
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 4.0e-89 332.0 257 69.3
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 6.8e-89 331.3 257 70.0
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.5e-88 330.1 256 69.1
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 5.8e-88 328.2 255 69.4
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 7.5e-88 327.8 266 67.3
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 2.0e-85 319.7 252 66.7
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.0e-85 319.7 254 69.3
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 2.0e-85 319.7 255 69.4
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 2.0e-85 319.7 256 66.8
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.5e-85 318.9 202 79.2
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 4.6e-85 318.5 268 64.9
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.3e-84 317.0 251 68.5
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 1.7e-84 316.6 202 78.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 2.3e-84 316.2 263 66.2
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 3.9e-84 315.5 262 66.4
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 5.0e-84 315.1 216 75.9
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 8.6e-84 314.3 248 67.3
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.1e-83 313.9 259 66.0
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 1.1e-83 313.9 256 67.2
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.9e-83 313.2 255 65.9
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 1.9e-83 313.2 241 68.9
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 3.3e-83 312.4 256 65.2
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 4.3e-83 312.0 266 65.0
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 5.6e-83 311.6 255 65.1
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 9.5e-83 310.8 255 65.9
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 9.5e-83 310.8 259 63.7
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.2e-82 310.5 228 68.9
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.2e-82 310.5 211 76.3
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.6e-82 310.1 243 68.3
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.1e-82 309.7 217 71.9
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 4.7e-82 308.5 206 75.2
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 4.7e-82 308.5 217 71.4
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 6.2e-82 308.1 207 75.4
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.2e-82 308.1 207 75.4
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.2e-82 308.1 263 62.7
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 6.2e-82 308.1 209 76.1
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-81 307.4 205 74.1
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 1.1e-81 307.4 254 65.7
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.4e-81 307.0 199 76.9
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 1.4e-81 307.0 245 69.0
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.4e-81 307.0 258 62.4
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 2.3e-81 306.2 264 64.0
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 3.1e-81 305.8 236 69.9
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.1e-81 305.8 246 67.1
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 3.1e-81 305.8 261 63.6
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 3.1e-81 305.8 254 66.1
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 4.0e-81 305.4 263 62.4
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 5.2e-81 305.1 216 72.2
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 5.2e-81 305.1 208 76.0
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 6.8e-81 304.7 216 72.7
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 6.8e-81 304.7 258 65.5
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 6.8e-81 304.7 259 65.3
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.8e-81 304.7 243 65.4
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 6.8e-81 304.7 244 64.3
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 6.8e-81 304.7 248 65.7
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 6.8e-81 304.7 248 65.7
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 8.9e-81 304.3 229 69.0
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 8.9e-81 304.3 254 63.8
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.2e-80 303.9 209 73.7
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.0e-80 303.1 207 73.9
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 3.4e-80 302.4 260 63.1
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 4.4e-80 302.0 223 70.9
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 5.8e-80 301.6 257 64.2
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 5.8e-80 301.6 231 68.4
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 9.8e-80 300.8 213 72.3
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 9.8e-80 300.8 213 72.3
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 9.8e-80 300.8 208 71.6
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.3e-79 300.4 238 67.2
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.3e-79 300.4 256 62.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 1.7e-79 300.1 256 62.1
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 1.7e-79 300.1 259 64.1
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.2e-79 299.7 258 62.8
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 3.7e-79 298.9 210 71.0
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 4.9e-79 298.5 216 71.8
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 6.4e-79 298.1 260 61.2
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 6.4e-79 298.1 245 64.5
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 6.4e-79 298.1 262 62.6
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 8.3e-79 297.7 200 75.5
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.1e-78 297.4 263 60.8
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.4e-78 297.0 258 60.9
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.9e-78 296.6 222 69.8
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.9e-78 296.6 252 64.3
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.9e-78 296.6 253 62.8
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 4.1e-78 295.4 258 62.0
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 4.1e-78 295.4 256 63.3
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 4.1e-78 295.4 256 63.3
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 5.4e-78 295.0 256 63.3
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 7.1e-78 294.7 229 66.8
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 9.2e-78 294.3 218 69.7
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 9.2e-78 294.3 202 72.8
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-77 293.9 258 62.4
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.2e-77 293.9 214 69.2
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.2e-77 293.9 257 63.0
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.6e-77 293.5 202 72.3
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 4.6e-77 292.0 217 67.3
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.8e-77 291.2 252 62.7
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 3.0e-76 289.3 185 76.2
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.0e-76 289.3 262 60.3
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 6.6e-76 288.1 229 63.8
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 4.3e-75 285.4 233 63.9
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 7.6e-72 274.6 256 59.0
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 7.6e-72 274.6 202 67.8
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.4e-70 270.4 186 73.1
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 3.2e-70 269.2 239 62.8
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.3e-68 263.8 288 54.9
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 9.6e-67 257.7 265 58.1
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.6e-64 249.6 245 58.4
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 2.6e-64 249.6 218 60.6
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 1.4e-62 243.8 206 58.3
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.4e-62 243.8 202 63.4
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 6.0e-61 238.4 224 57.1
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.0e-60 237.7 205 59.5
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.4e-57 226.5 234 56.8
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 2.6e-56 223.0 123 87.0
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 9.0e-49 198.0 192 57.8
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 5.6e-43 178.7 111 80.2
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.6e-42 177.2 131 68.7
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.7e-42 176.0 186 52.2
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 4.8e-42 175.6 153 62.1
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 4.9e-39 165.6 103 76.7
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 6.5e-39 165.2 103 75.7
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 7.1e-38 161.8 129 64.3
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 2.7e-37 159.8 124 66.1
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.4e-32 142.9 81 87.7
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 7.2e-30 135.2 117 59.0
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 7.9e-29 131.7 77 81.8
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.0e-28 129.8 143 52.4
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.5e-27 127.5 74 85.1
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.9e-27 127.1 174 36.2
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 7.4e-27 125.2 70 90.0
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.1e-21 107.1 78 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 6.3e-18 95.5 66 65.2
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 3.8e-15 86.3 91 52.7
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-14 84.3 49 77.6
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 4.4e-11 72.8 53 62.3
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 6.3e-10 68.9 39 79.5
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.0e-08 63.9 32 90.6
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 8.5e-07 58.5 27 88.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 8.5e-07 58.5 27 88.9


User provided reference genes

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