Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 0.0e+00 1223.4 626 100.0
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.1e-273 946.4 755 70.1
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 3.1e-252 875.2 628 73.1
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.2e-248 863.2 632 73.4
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 1.3e-245 853.2 633 71.9
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 3.4e-243 845.1 631 71.6
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 1.2e-240 836.6 635 70.6
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 3.5e-240 835.1 632 70.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.3e-239 833.2 637 70.3
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.6e-237 826.2 636 70.3
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.8e-236 822.8 639 69.6
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.8e-236 822.8 632 70.9
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 4.0e-236 821.6 633 70.1
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.2e-235 820.1 654 68.8
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.4e-235 818.5 632 70.4
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 9.3e-233 810.4 629 69.3
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.2e-232 810.1 629 69.6
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 2.3e-231 805.8 631 68.5
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.5e-230 803.1 641 68.8
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.3e-230 802.0 635 68.5
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 1.3e-229 800.0 630 68.9
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 4.8e-229 798.1 633 68.1
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 6.3e-229 797.7 630 69.0
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 8.2e-229 797.3 630 68.9
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.8e-228 796.2 632 67.7
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.4e-228 795.8 631 68.1
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 3.1e-228 795.4 629 67.6
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.2e-227 793.5 636 67.6
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.2e-227 793.5 632 67.7
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.5e-227 793.1 632 67.6
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 1.5e-227 793.1 631 67.7
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 7.6e-227 790.8 634 67.7
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.7e-226 789.6 633 68.4
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 2.2e-226 789.3 613 69.5
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 5.0e-226 788.1 629 66.3
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 5.0e-226 788.1 633 67.3
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 3.2e-225 785.4 636 67.5
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 5.5e-225 784.6 633 67.6
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 7.2e-225 784.3 634 67.4
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 2.1e-224 782.7 633 67.1
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 2.7e-224 782.3 631 67.4
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 3.5e-224 781.9 631 66.9
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 3.5e-224 781.9 635 66.3
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 3.0e-223 778.9 631 67.2
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 6.7e-223 777.7 639 66.5
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 5.7e-222 774.6 652 65.6
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 7.4e-222 774.2 645 65.7
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 9.7e-222 773.9 612 67.6
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 1.3e-221 773.5 632 64.9
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.6e-221 773.1 637 66.6
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 2.8e-221 772.3 645 65.6
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 4.8e-221 771.5 631 66.7
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 3.1e-220 768.8 631 66.9
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 4.1e-220 768.5 631 67.2
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 6.9e-220 767.7 632 65.8
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 7.7e-219 764.2 634 65.1
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.0e-218 763.8 635 65.7
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.3e-218 763.5 592 70.3
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 9.4e-217 757.3 631 65.3
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 2.7e-216 755.7 641 65.2
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.5e-214 750.0 634 65.8
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 2.0e-214 749.6 633 63.0
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.0e-214 749.6 634 62.9
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.3e-214 748.8 635 65.0
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.3e-213 746.9 631 64.3
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.7e-213 746.5 626 66.0
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.7e-213 746.5 637 64.8
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.2e-213 746.1 634 62.8
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.8e-213 745.0 634 62.6
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.8e-213 745.0 634 62.8
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 4.1e-212 741.9 488 78.5
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.0e-210 737.3 639 64.3
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 5.0e-210 734.9 629 65.5
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-208 730.3 661 60.2
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 3.9e-207 725.3 637 62.2
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.5e-206 723.4 637 63.7
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.2e-205 719.5 623 62.6
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 2.2e-205 719.5 735 57.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.8e-204 716.5 649 62.9
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 6.5e-202 708.0 626 62.0
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 1.2e-200 703.7 651 60.4
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.7e-200 702.6 623 62.4
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.7e-200 702.6 641 61.3
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 4.7e-200 701.8 630 64.0
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 7.5e-198 694.5 645 62.0
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 4.8e-197 691.8 634 61.4
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 4.1e-196 688.7 616 61.7
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 7.0e-196 688.0 618 61.3
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 7.7e-195 684.5 619 61.6
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.7e-194 683.3 619 60.6
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.7e-194 683.3 634 61.7
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.5e-193 680.2 648 59.0
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 3.2e-193 679.1 532 69.4
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.1e-192 676.4 619 60.9
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 2.0e-190 669.8 580 63.1
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.6e-190 669.5 645 58.3
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 4.4e-190 668.7 628 58.8
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 4.4e-190 668.7 628 58.8
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 4.4e-190 668.7 628 58.8
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.2e-189 666.4 628 58.4
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.1e-188 664.1 628 58.4
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-187 660.2 626 59.1
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 4.2e-185 652.1 620 60.3
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 2.1e-184 649.8 630 57.9
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.8e-180 636.7 625 57.9
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 7.0e-180 634.8 506 65.8
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.3e-175 619.8 639 56.7
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.1e-169 600.9 417 74.6
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 2.6e-158 563.1 636 53.0
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.7e-141 507.3 383 68.4
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.3e-129 466.5 657 46.9
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 7.4e-129 465.3 670 45.5
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.4e-127 461.1 349 69.3
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 2.1e-123 447.2 470 55.5
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 2.1e-123 447.2 470 55.5
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 2.1e-123 447.2 470 55.5
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 8.4e-117 425.2 263 79.1
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.9e-113 414.1 545 48.3
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.6e-81 307.4 195 78.5
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 5.5e-76 289.7 163 87.7
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-75 288.5 312 55.8
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 3.0e-74 283.9 392 48.5
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.5e-73 281.6 306 55.9
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 5.7e-73 279.6 609 37.4
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 9.8e-73 278.9 161 83.9
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.2e-67 261.9 194 69.1
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 5.2e-66 256.5 410 43.4
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 5.7e-65 253.1 403 42.2
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 4.0e-58 230.3 227 57.7
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 3.4e-57 227.3 243 53.9
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 4.6e-54 216.9 133 77.4
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 2.3e-50 204.5 163 70.6
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.5e-49 201.8 134 72.4
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.9e-44 184.9 474 34.0
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 5.6e-44 183.3 178 61.2
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 7.5e-41 172.9 114 76.3
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.7e-37 161.8 222 49.5
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 8.1e-35 152.9 179 53.6
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 2.2e-32 144.8 156 57.7
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 1.2e-30 139.0 669 28.1
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-25 121.7 112 58.0
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.9e-24 117.9 70 80.0
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.6e-22 112.1 58 94.8
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 5.1e-21 107.1 67 74.6
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.1e-20 105.9 103 57.3
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 2.5e-20 104.8 80 66.2
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.4e-18 99.0 69 75.4
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.4e-15 89.0 68 69.1
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.9e-15 88.6 64 73.4
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.9e-15 88.6 137 38.7
Oeu013824.1 Olea europaea HOM05D011671 ORTHO05D013298 1.2e-14 85.9 64 73.4
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.6e-14 85.5 88 53.4
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.3e-12 77.8 58 70.7
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 7.4e-12 76.6 84 44.0
Oeu020497.1 Olea europaea HOM05D011671 ORTHO05D013298 2.8e-11 74.7 52 76.9
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 1.4e-10 72.4 49 79.6
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 9.0e-10 69.7 243 27.2
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.9e-08 64.7 77 51.9
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 6.4e-08 63.5 34 79.4
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 3.2e-07 61.2 53 54.7
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 1.2e-06 59.3 53 52.8


User provided reference genes

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