Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 7.6e-135 483.8 238 100.0
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 4.5e-103 378.3 225 80.4
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 2.7e-76 289.3 226 62.4
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 4.8e-73 278.5 229 61.6
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 3.1e-72 275.8 221 59.7
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 3.8e-70 268.9 228 57.0
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 2.6e-66 256.1 229 53.7
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 5.7e-66 255.0 216 61.1
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 1.8e-64 250.0 227 54.2
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 7.8e-63 244.6 228 56.6
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 1.7e-62 243.4 220 55.9
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 2.3e-62 243.0 230 55.7
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 2.9e-62 242.7 229 52.0
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 5.0e-62 241.9 229 55.9
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 1.5e-61 240.4 228 56.1
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 2.5e-61 239.6 229 55.9
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 4.3e-61 238.8 229 55.0
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.1e-60 236.5 229 54.1
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 2.6e-58 229.6 226 54.0
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 8.3e-57 224.6 230 54.3
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 1.4e-56 223.8 230 53.9
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.9e-56 223.4 230 53.5
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 2.4e-56 223.0 229 52.8
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 5.4e-56 221.9 245 49.8
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 2.0e-55 219.9 235 48.9
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 2.7e-55 219.5 229 49.3
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 3.5e-55 219.2 229 48.9
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 4.6e-55 218.8 241 48.5
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 4.6e-55 218.8 233 47.6
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 2.3e-54 216.5 241 49.0
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 3.0e-54 216.1 241 47.7
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 8.6e-54 214.5 226 50.9
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 1.1e-53 214.2 230 48.7
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 1.5e-53 213.8 241 47.3
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.9e-53 213.4 241 47.3
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 2.5e-53 213.0 241 47.3
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 7.3e-53 211.5 224 50.4
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 4.7e-52 208.8 240 45.8
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 1.1e-51 207.6 216 46.8
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 1.8e-51 206.8 229 49.8
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 3.1e-51 206.1 225 45.3
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 5.2e-51 205.3 230 45.2
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 6.8e-51 204.9 231 50.6
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 8.9e-51 204.5 223 48.0
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 1.5e-50 203.8 221 48.0
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 2.0e-50 203.4 232 44.0
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 8.3e-49 198.0 231 45.5
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.4e-48 196.4 217 47.0
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 3.2e-48 196.1 230 46.5
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 7.0e-48 194.9 227 44.9
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 9.2e-48 194.5 217 46.5
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 1.6e-47 193.7 231 44.6
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 1.7e-46 190.3 238 42.4
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 2.3e-46 189.9 213 46.0
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 3.9e-46 189.1 228 45.2
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 5.1e-46 188.7 218 45.9
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 6.6e-46 188.3 216 45.4
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 1.9e-45 186.8 152 59.2
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 9.5e-45 184.5 138 63.8
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 2.1e-44 183.3 228 46.1
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 4.7e-44 182.2 212 46.7
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 8.1e-44 181.4 220 46.4
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 1.1e-43 181.0 205 46.3
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 1.8e-43 180.3 226 47.3
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 2.3e-43 179.9 137 57.7
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 3.1e-43 179.5 226 46.9
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 4.0e-43 179.1 230 44.8
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 1.2e-42 177.6 235 43.4
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 2.6e-42 176.4 210 44.8
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.6e-42 176.4 230 46.1
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 3.4e-42 176.0 215 47.0
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 4.4e-42 175.6 240 44.2
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 7.5e-42 174.9 248 40.3
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 7.5e-42 174.9 220 46.4
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.2e-41 173.3 214 46.3
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 2.9e-41 172.9 132 60.6
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 3.7e-41 172.6 204 43.6
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 3.7e-41 172.6 229 43.7
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 4.9e-41 172.2 219 42.0
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 6.4e-41 171.8 215 46.0
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 2.4e-40 169.9 221 43.9
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 2.4e-40 169.9 214 45.8
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 4.1e-40 169.1 200 43.0
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 4.1e-40 169.1 214 45.3
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 5.4e-40 168.7 227 44.1
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 7.1e-40 168.3 224 43.8
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 1.6e-39 167.2 230 42.2
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 1.9e-37 160.2 229 43.7
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 1.2e-36 157.5 236 36.9
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 1.2e-36 157.5 121 56.2
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 1.4e-35 154.1 170 43.5
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 1.4e-35 154.1 232 38.8
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 1.8e-35 153.7 232 38.8
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 1.5e-34 150.6 170 46.5
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 1.5e-34 150.6 223 36.3
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 5.8e-34 148.7 232 37.9
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 7.6e-34 148.3 201 38.3
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 7.6e-34 148.3 239 36.8
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 1.3e-33 147.5 231 36.4
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 1.7e-33 147.1 122 53.3
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 1.7e-33 147.1 231 36.4
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 1.7e-33 147.1 122 53.3
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 1.7e-33 147.1 122 53.3
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 1.7e-33 147.1 122 53.3
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.7e-33 147.1 136 47.8
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 2.2e-33 146.7 232 38.4
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 2.9e-33 146.4 213 39.9
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 2.9e-33 146.4 213 39.9
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 2.9e-33 146.4 213 39.9
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 2.9e-33 146.4 122 53.3
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.8e-33 146.0 136 48.5
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 4.9e-33 145.6 216 37.5
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 6.4e-33 145.2 231 36.8
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 8.4e-33 144.8 231 36.8
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 1.1e-32 144.4 132 50.0
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 1.4e-32 144.1 229 36.7
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 1.4e-32 144.1 212 39.6
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 1.9e-32 143.7 139 45.3
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 1.0e-30 137.9 219 41.1
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.3e-30 137.5 137 43.8
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 3.9e-30 136.0 224 35.7
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 3.6e-28 129.4 134 47.0
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 4.7e-28 129.0 163 41.1
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 4.9e-25 119.0 165 35.8
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.7e-23 113.2 126 42.1
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 1.5e-18 97.4 230 31.3
Psat5g038080 Pisum sativum HOM05D001700 ORTHO05D016448 1.5e-18 97.4 120 40.0
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 1.7e-17 94.0 62 64.5
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.9e-17 92.4 121 38.8
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 1.1e-16 91.3 135 35.6
vmacro07102 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 1.1e-16 91.3 56 66.1
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 1.9e-16 90.5 114 41.2
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.2e-16 89.7 183 33.3
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 9.3e-16 88.2 145 33.1
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 9.3e-16 88.2 145 33.1
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-15 87.8 134 38.1
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-13 81.3 139 35.3
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.7e-12 76.3 115 35.7
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.7e-12 76.3 115 35.7
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 1.7e-09 67.4 42 66.7


User provided reference genes

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