Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 9.8e-152 540.0 261 100.0
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 5.3e-57 225.3 306 47.1
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 3.6e-53 212.6 317 42.6
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 1.8e-52 210.3 312 42.9
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 6.8e-52 208.4 310 42.3
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 1.5e-51 207.2 294 45.2
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 7.5e-51 204.9 300 43.7
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.7e-50 203.8 311 42.4
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.7e-50 203.8 311 42.4
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 2.8e-50 203.0 300 43.0
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 4.8e-50 202.2 317 41.3
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 6.3e-50 201.8 302 42.4
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 6.3e-50 201.8 318 41.8
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 8.3e-50 201.4 300 43.7
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 1.8e-49 200.3 287 44.3
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 3.1e-49 199.5 328 41.8
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 3.1e-49 199.5 319 40.8
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 1.2e-48 197.6 321 40.8
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 1.6e-48 197.2 307 41.0
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 1.6e-48 197.2 301 42.9
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 1.6e-48 197.2 320 42.5
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 2.7e-48 196.4 320 40.9
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 3.5e-48 196.1 321 40.8
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 4.5e-48 195.7 321 40.5
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 5.9e-48 195.3 318 40.6
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 7.7e-48 194.9 297 41.8
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 1.0e-47 194.5 318 41.5
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 1.3e-47 194.1 341 40.8
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 3.8e-47 192.6 321 40.2
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 6.5e-47 191.8 329 39.5
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 6.5e-47 191.8 319 40.1
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 1.1e-46 191.0 319 41.1
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 1.5e-46 190.7 319 40.8
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 1.9e-46 190.3 341 38.7
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 3.2e-46 189.5 314 41.1
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 4.2e-46 189.1 339 38.3
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 5.5e-46 188.7 317 39.1
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 7.2e-46 188.3 319 38.6
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 9.4e-46 188.0 302 40.7
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 9.4e-46 188.0 318 39.6
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 1.2e-45 187.6 313 40.3
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 1.6e-45 187.2 319 42.0
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 2.1e-45 186.8 316 41.1
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 2.7e-45 186.4 314 41.4
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 2.7e-45 186.4 320 40.6
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 2.7e-45 186.4 319 39.2
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 2.7e-45 186.4 289 42.2
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 4.7e-45 185.7 317 38.5
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 1.0e-44 184.5 327 38.5
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 3.0e-44 183.0 317 39.4
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 3.0e-44 183.0 320 40.0
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 3.0e-44 183.0 313 40.3
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 4.0e-44 182.6 305 41.6
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 8.8e-44 181.4 313 40.9
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 2.0e-43 180.3 311 39.5
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 3.4e-43 179.5 333 40.5
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 4.4e-43 179.1 321 40.5
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 7.5e-43 178.3 314 39.8
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 7.5e-43 178.3 311 40.5
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 7.5e-43 178.3 290 42.1
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 9.8e-43 177.9 324 39.5
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 8.3e-42 174.9 312 37.8
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 1.1e-41 174.5 319 40.1
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.1e-41 174.5 333 39.9
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 1.1e-41 174.5 352 36.4
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 1.4e-41 174.1 311 37.9
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 1.8e-41 173.7 350 38.0
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 2.4e-41 173.3 329 38.6
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 3.1e-41 172.9 324 38.6
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 5.4e-41 172.2 328 39.0
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 2.0e-40 170.2 324 38.0
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 4.5e-40 169.1 308 38.0
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 7.7e-40 168.3 323 38.1
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 1.0e-39 167.9 318 39.0
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 1.0e-39 167.9 325 37.5
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.7e-39 167.2 324 39.8
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 1.7e-39 167.2 332 36.4
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 1.7e-39 167.2 302 39.1
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 2.9e-39 166.4 307 37.8
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 5.0e-39 165.6 312 39.7
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 4.0e-36 156.0 265 40.8
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 8.9e-36 154.8 285 39.6
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 1.4e-33 147.5 226 41.2
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 1.6e-29 134.0 244 36.5
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 2.3e-28 130.2 180 43.3
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 5.2e-28 129.0 286 36.7
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 2.0e-27 127.1 356 33.1
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 8.3e-26 121.7 90 67.8
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 1.1e-25 121.3 113 53.1
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 1.1e-25 121.3 91 65.9
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 5.4e-25 119.0 248 35.9
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 2.5e-22 110.2 292 33.2
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 1.2e-21 107.8 148 47.3
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 6.8e-20 102.1 130 43.8
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 4.4e-19 99.4 274 32.1
HPP92_019927 Vanilla planifolia HOM05D006401 ORTHO05D007864 8.3e-18 95.1 76 56.6
TPR.G25454 Trifolium pratense HOM05D006401 ORTHO05D007864 1.4e-17 94.4 111 51.4
Eucgr.C02172 Eucalyptus grandis HOM05D006401 ORTHO05D007864 1.9e-17 94.0 66 66.7
PGSC0003DMG402009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 3.9e-15 86.3 92 55.4
SEGI_34102 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.9e-14 84.0 148 39.2
FAN07G0669 Fragaria x ananassa HOM05D006401 ORTHO05D007864 2.1e-13 80.5 92 51.1
Solyc07g017250.4 Solanum lycopersicum HOM05D006401 ORTHO05D007864 8.1e-13 78.6 165 35.2
MCO14G313 Micromonas commoda HOM05D006401 ORTHO05D007864 3.1e-12 76.6 270 30.0
CAN.G146.3 Capsicum annuum HOM05D006401 ORTHO05D007864 4.4e-11 72.8 73 49.3
SEGI_28851 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 7.6e-11 72.0 162 35.2
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-10 70.9 67 50.7
Aa31sc608G30 Aethionema arabicum HOM05D006401 ORTHO05D007864 6.0e-08 62.4 92 45.7
Oeu021025.1 Olea europaea HOM05D006401 ORTHO05D007864 6.0e-08 62.4 35 82.9
Solyc07g017260.2 Solanum lycopersicum HOM05D006401 ORTHO05D007864 6.0e-08 62.4 36 77.8
PGSC0003DMG401009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 6.0e-08 62.4 36 77.8
SEGI_04184 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.3e-07 61.2 125 36.8


User provided reference genes

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