Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 0.0e+00 2373.6 1365 100.0
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 0.0e+00 1890.5 1373 84.0
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 0.0e+00 1268.1 1377 60.2
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 0.0e+00 1093.2 1398 54.4
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1084.7 1390 52.4
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1079.3 1390 52.4
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 1.2e-309 1067.0 1398 51.8
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 8.1e-306 1054.3 1398 52.9
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 3.4e-304 1048.9 1381 53.1
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 1.1e-302 1043.9 1406 52.9
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 1.9e-299 1033.1 1400 50.8
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 3.9e-292 1008.8 1393 50.0
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 6.6e-292 1008.1 1398 49.6
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 1.3e-290 1003.8 1386 51.6
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 2.6e-288 996.1 1397 49.9
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 6.4e-287 991.5 1440 49.9
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 6.4e-287 991.5 1416 48.8
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 2.1e-285 986.5 1386 51.4
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 7.9e-285 984.6 1360 49.6
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 2.8e-282 976.1 1404 49.5
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 1.7e-279 966.8 1413 48.1
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 2.9e-279 966.1 1403 49.0
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 1.1e-278 964.1 1414 48.0
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 3.9e-276 955.7 1412 48.8
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 9.6e-275 951.0 1387 46.9
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 1.6e-269 933.7 1412 47.4
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 4.6e-269 932.2 1380 47.3
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 3.0e-268 929.5 1417 49.6
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 1.3e-266 924.1 1391 47.6
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 4.8e-266 922.2 1420 48.5
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 1.4e-265 920.6 1398 46.6
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 2.4e-265 919.8 1383 47.9
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 2.5e-262 909.8 1402 47.4
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 5.7e-259 898.7 1355 49.2
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 3.1e-257 892.9 1430 47.2
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 2.5e-254 883.2 1399 47.2
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 3.6e-253 879.4 1393 47.5
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 4.7e-253 879.0 1398 46.6
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 7.9e-253 878.2 1402 47.9
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 1.8e-252 877.1 1546 43.1
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 6.7e-252 875.2 1437 46.4
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 2.0e-251 873.6 1478 44.9
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 2.8e-250 869.8 1385 45.5
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 3.1e-249 866.3 1394 45.5
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 3.2e-246 856.3 1417 44.7
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 2.2e-242 843.6 1427 45.2
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 6.3e-242 842.0 1396 47.9
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 1.6e-240 837.4 1376 45.2
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 4.5e-240 835.9 1397 44.5
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 1.9e-238 830.5 1447 45.5
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 1.4e-236 824.3 1450 45.0
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 1.3e-234 817.8 1475 43.6
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 4.1e-233 812.8 1375 46.2
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 1.1e-230 804.7 1403 44.6
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 5.5e-230 802.4 1434 43.7
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 1.8e-228 797.3 1381 44.0
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 2.6e-227 793.5 1423 44.6
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 5.7e-227 792.3 1392 44.1
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 7.5e-227 792.0 1388 43.2
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 5.4e-225 785.8 1397 44.0
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 9.1e-225 785.0 1380 42.9
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 3.5e-224 783.1 1381 43.2
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 2.8e-221 773.5 1412 44.1
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 2.3e-220 770.4 1382 45.4
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 2.3e-220 770.4 1388 42.2
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 6.8e-220 768.8 1388 43.7
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 8.9e-220 768.5 1400 42.4
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 2.2e-218 763.8 1462 41.9
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 8.3e-218 761.9 1614 41.0
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 4.5e-216 756.1 1415 42.4
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 8.6e-215 751.9 1409 42.6
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 3.6e-213 746.5 1430 43.4
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 4.7e-213 746.1 1454 42.3
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 1.8e-212 744.2 1437 42.1
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 5.2e-212 742.7 1491 42.3
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 4.9e-210 736.1 1425 42.1
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 3.0e-207 726.9 1365 41.8
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 1.1e-206 724.9 1385 42.0
Hma1.2p1_0151F.1_g066930 Hydrangea macrophylla HOM05D003499 ORTHO05D004754 6.8e-204 715.7 635 66.1
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 1.0e-199 701.8 1437 40.3
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 5.1e-199 699.5 1392 40.9
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.9e-198 697.6 1417 41.8
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 5.6e-198 696.0 1327 43.8
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 3.7e-194 683.3 1428 40.3
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 4.1e-193 679.9 1443 39.5
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 1.2e-192 678.3 1427 39.5
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 1.1e-190 671.8 1471 39.2
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 2.1e-189 667.5 1436 39.7
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 2.4e-188 664.1 1428 40.0
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 1.5e-187 661.4 1427 39.8
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 3.4e-187 660.2 1434 39.3
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 3.8e-186 656.8 1420 39.2
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 1.9e-185 654.4 1470 38.2
MD10G1218800 Malus domestica HOM05D003499 ORTHO05D004754 8.7e-175 619.0 820 51.7
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 9.6e-174 615.5 1221 40.0
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 1.2e-171 608.6 1441 38.1
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 1.4e-169 601.7 1191 40.7
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 1.9e-169 601.3 1419 37.8
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 1.1e-166 592.0 1414 38.0
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 6.0e-160 569.7 1235 37.7
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 9.7e-142 509.2 738 45.7
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 7.2e-129 466.5 1394 34.1
Sabra16G0005400 Salix brachista HOM05D000228 ORTHO05D001122 3.9e-127 460.7 678 45.9
Pp3c8_8020 Physcomitrium patens HOM05D003499 ORTHO05D004754 2.0e-123 448.4 712 41.2
AagrBONN_evm.TU.Sc2ySwM_344.3653 Anthoceros agrestis HOM05D003499 ORTHO05D004754 8.5e-122 443.0 983 36.6
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 3.0e-119 434.5 1373 32.8
Mapoly0042s0082 Marchantia polymorpha HOM05D003499 ORTHO05D004754 5.2e-119 433.7 683 41.0
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 1.5e-118 432.2 1409 33.6
vmacro21306 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 2.3e-106 391.7 560 48.9
Sabra11G0075400 Salix brachista HOM05D000228 ORTHO05D001122 5.8e-94 350.5 677 39.0
SMO203G0250 Selaginella moellendorffii HOM05D003499 ORTHO05D004754 3.7e-93 347.8 1435 28.4
Lj2A6T29 Lonicera japonica HOM05D003499 ORTHO05D004754 8.6e-90 336.7 843 39.1
SEGI_41216 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 1.6e-83 315.8 469 43.3
Solyc06g053590.4 Solanum lycopersicum HOM05D003499 ORTHO05D004754 3.3e-81 308.1 752 38.0
Sabra16G0132400 Salix brachista HOM05D000228 ORTHO05D001122 7.6e-70 270.4 678 34.8
HPP92_017338 Vanilla planifolia HOM05D003499 ORTHO05D004754 4.9e-69 267.7 355 48.2
MBI02_g17883_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.5e-65 256.1 581 40.1
SEGI_27786 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 3.4e-62 245.0 1146 28.4
MBI02_g17882_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.2e-61 242.3 201 65.2
AL2G39750 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.2e-54 219.9 220 57.3
Sabra19G0031200 Salix brachista HOM05D000228 ORTHO05D001122 7.6e-54 217.2 502 36.1
CBR_g33917 Chara braunii HOM05D003499 ORTHO05D004754 4.0e-47 194.9 410 34.1
Cpa.g.sc569.2 Carica papaya HOM05D003499 ORTHO05D004754 9.3e-44 183.7 403 38.7
AL2G39760 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 4.6e-35 154.8 188 48.9
CBR_g33916 Chara braunii HOM05D003499 ORTHO05D004754 3.8e-29 135.2 182 42.9
HPP92_017337 Vanilla planifolia HOM05D003499 ORTHO05D004754 2.7e-27 129.0 327 33.6
MBI12_g17629_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.3e-26 125.9 137 52.6
SEGI_36052 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 8.8e-26 124.0 117 55.6
Solyc06g053570.2 Solanum lycopersicum HOM05D003499 ORTHO05D004754 2.0e-25 122.9 84 73.8
MBI07_g23017_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.8e-23 116.3 154 45.5
Sabra19G0031300 Salix brachista HOM05D000228 ORTHO05D001122 1.5e-22 113.2 131 51.9
MBI18_g27146_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.0e-18 100.5 235 34.5
MCO03G110 Micromonas commoda HOM05D003499 ORTHO05D004754 3.3e-17 95.5 750 20.8
Rhsim12G0215500 Rhododendron simsii HOM05D003499 ORTHO05D004754 6.3e-16 91.3 232 33.6
Cpa.g.sc2332.1 Carica papaya HOM05D003499 ORTHO05D004754 1.8e-15 89.7 392 30.9
AUR62018106 Chenopodium quinoa HOM05D003499 ORTHO05D004754 1.6e-14 86.7 401 31.4
MBI17_g19041_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 5.9e-14 84.7 89 52.8
MBI16_g34347_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.0e-13 84.0 107 46.7
MBI14_g41599_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.7e-13 83.2 90 51.1
MBI03_g24553_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 6.5e-13 81.3 89 51.7
COL.COLO4_35707 Corchorus olitorius HOM05D003499 ORTHO05D004754 2.7e-11 75.9 169 35.5
arahy.Tifrunner.gnm1.ann1.M9UA6E Arachis hypogaea HOM05D026678 ORTHO05D004754 1.4e-10 73.6 94 45.7
MBI10_g08630_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.3e-10 72.8 128 39.8
AL8G20460 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 2.0e-09 69.7 169 34.9
Rhsim06G0244900 Rhododendron simsii HOM05D003499 ORTHO05D004754 3.7e-08 65.5 337 30.0
MBI10_g16742_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.1e-07 63.9 100 44.0
Glyma.08G234500 Glycine max HOM05D003499 ORTHO05D011720 5.9e-06 58.2 126 33.3


User provided reference genes

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