Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.7e-230 802.4 413 100.0
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.3e-203 712.2 415 88.7
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.1e-202 709.9 415 88.0
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.3e-201 706.4 415 87.5
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.8e-201 705.3 415 88.2
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.2e-198 695.7 414 86.2
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.3e-195 685.6 413 84.5
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.6e-195 684.1 413 84.5
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 7.3e-194 680.6 413 84.3
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 9.6e-194 680.2 413 83.8
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.6e-193 679.5 413 84.3
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 6.2e-193 677.6 409 84.8
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.1e-192 676.8 414 83.8
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.4e-192 675.6 413 83.8
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.4e-192 675.6 414 83.8
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 3.1e-192 675.2 409 84.6
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.1e-192 675.2 413 84.5
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 6.9e-192 674.1 415 82.4
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 6.9e-192 674.1 410 83.7
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 6.9e-192 674.1 414 83.3
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 9.0e-192 673.7 411 83.9
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.5e-191 672.9 413 83.8
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 9.9e-191 670.2 413 83.8
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.2e-190 669.1 413 82.3
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.9e-190 668.7 419 83.3
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.9e-190 667.9 413 82.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 4.9e-190 667.9 413 82.8
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 6.4e-190 667.5 415 82.9
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.4e-189 666.4 416 82.5
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.9e-189 666.0 413 82.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.2e-189 664.8 413 81.8
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 4.2e-189 664.8 413 82.3
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.7e-188 662.1 413 82.1
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 2.7e-188 662.1 413 81.1
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.7e-188 662.1 444 77.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.0e-187 660.2 420 81.7
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.0e-187 658.7 413 80.9
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 3.9e-187 658.3 413 81.1
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 5.1e-187 657.9 413 81.1
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 5.1e-187 657.9 413 81.1
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.1e-187 657.9 413 80.4
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 6.7e-187 657.5 414 80.2
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 6.7e-187 657.5 413 80.1
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 8.7e-187 657.1 411 81.5
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 2.5e-186 655.6 413 81.1
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.5e-186 655.6 413 81.1
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 5.6e-186 654.4 429 79.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 7.4e-186 654.1 415 80.7
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.3e-185 653.3 415 80.5
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.1e-185 652.5 413 81.4
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 6.2e-185 651.0 411 81.5
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.2e-185 651.0 413 79.7
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-184 649.8 413 79.7
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.1e-184 648.7 413 80.9
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 4.0e-184 648.3 410 80.0
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 5.3e-184 647.9 412 80.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 6.9e-184 647.5 413 80.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 9.0e-184 647.1 409 80.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.2e-183 646.7 413 79.7
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.3e-182 643.3 413 80.4
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.3e-182 643.3 411 79.6
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.3e-182 643.3 413 79.2
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 2.2e-182 642.5 413 79.4
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.8e-182 641.7 413 79.7
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.9e-182 641.3 413 80.1
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 6.5e-182 641.0 413 79.7
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 8.4e-182 640.6 413 79.7
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 8.4e-182 640.6 413 79.7
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.1e-181 640.2 413 79.7
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.2e-181 638.6 413 79.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 9.3e-181 637.1 413 78.0
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.1e-180 636.0 413 78.9
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.7e-180 635.6 413 79.2
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 9.6e-178 627.1 425 77.4
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 9.6e-178 627.1 425 77.4
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-177 626.3 425 77.2
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.8e-177 625.5 413 77.5
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 8.2e-177 624.0 409 79.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 6.9e-176 620.9 413 76.8
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.8e-175 617.8 409 77.5
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.0e-174 617.1 414 77.1
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.9e-173 612.8 436 72.9
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 6.1e-172 607.8 413 76.5
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.3e-171 605.9 414 73.9
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 8.7e-171 604.0 413 75.3
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.5e-170 603.2 414 74.2
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.5e-170 603.2 414 73.4
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.9e-170 602.8 370 83.8
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.5e-170 602.4 374 82.9
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.5e-167 593.2 415 70.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-165 586.3 415 74.7
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 6.7e-163 577.8 409 74.3
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.1e-162 577.0 410 70.0
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 7.4e-162 574.3 405 74.6
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.7e-158 563.1 323 87.6
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.1e-157 560.5 369 79.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 5.5e-157 558.1 413 71.9
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 3.3e-154 548.9 410 71.2
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 3.7e-153 545.4 408 67.2
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 9.4e-149 530.8 417 68.8
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.5e-146 523.5 398 65.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.0e-146 523.1 483 62.1
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 2.4e-144 516.2 412 62.4
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.9e-143 511.5 409 67.5
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.6e-140 503.4 405 61.2
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.0e-136 488.0 281 86.5
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.2e-135 487.3 281 86.5
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 3.2e-133 479.2 303 79.9
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.1e-128 464.2 256 89.5
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 3.5e-127 459.1 295 80.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.6e-116 423.7 314 69.4
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 8.9e-115 417.9 256 79.3
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.6e-108 397.1 284 70.4
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-104 383.6 313 67.4
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-99 367.9 292 68.8
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 3.1e-99 366.3 284 68.7
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 2.6e-98 363.2 414 48.3
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.2e-95 354.4 199 89.9
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.1e-84 317.0 191 82.2
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.6e-77 292.4 238 62.6
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.4e-75 287.7 173 82.7
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.6e-71 274.2 186 75.8
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.0e-70 270.0 199 66.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.5e-64 249.2 204 64.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 3.9e-62 243.0 400 36.0
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.5e-58 231.1 131 87.0
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 2.3e-54 217.2 404 33.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 6.7e-54 215.7 218 56.0
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 7.4e-53 212.2 318 35.8
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-48 197.6 126 77.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.2e-48 196.8 116 82.8
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.3e-44 184.9 197 58.9
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-41 175.3 102 84.3
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.6e-39 166.8 175 58.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-38 164.9 160 62.5
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-33 148.7 83 86.7
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.5e-32 144.1 412 30.1
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.2e-32 142.5 80 83.8
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.7e-31 140.6 107 61.7
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.7e-31 139.8 113 66.4
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.7e-26 124.0 115 60.0
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-18 97.8 99 56.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-17 95.1 51 88.2
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.3e-17 95.1 153 41.8
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 7.2e-16 89.4 127 48.8
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 7.2e-16 89.4 179 39.1
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.5e-13 81.6 146 41.8
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.5e-13 81.6 59 76.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.1e-11 73.6 50 70.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-10 72.0 55 69.1
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 6.6e-09 66.2 81 48.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 2.5e-08 64.3 40 77.5
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.4e-06 58.5 63 47.6


User provided reference genes

Program Settings