Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 6.7e-226 786.9 381 100.0
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.7e-136 490.0 375 65.9
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 2.2e-136 489.6 363 67.5
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.2e-134 483.8 382 65.2
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 1.3e-133 480.3 379 64.9
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 2.3e-133 479.6 387 63.8
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 1.2e-129 467.2 385 63.6
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 5.8e-129 464.9 362 62.2
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 1.3e-128 463.8 380 62.1
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 1.2e-126 457.2 376 62.2
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 2.7e-126 456.1 345 63.5
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 8.7e-125 451.1 363 62.0
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 1.5e-124 450.3 342 63.2
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 4.3e-124 448.7 378 60.3
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 9.7e-124 447.6 354 61.6
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.6e-123 446.8 360 61.4
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 2.2e-123 446.4 364 62.4
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.2e-121 440.7 369 59.9
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.0e-121 439.9 366 60.4
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 8.5e-120 434.5 361 58.2
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 8.5e-120 434.5 363 58.7
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 9.4e-119 431.0 354 60.5
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.1e-118 429.9 329 63.2
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 2.7e-118 429.5 381 58.0
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 3.6e-118 429.1 359 59.9
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 1.8e-117 426.8 363 58.7
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 5.1e-117 425.2 381 56.7
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.1e-116 424.1 363 58.4
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.5e-116 423.7 364 56.6
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 7.4e-116 421.4 379 57.5
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 2.2e-115 419.9 340 61.5
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 2.8e-115 419.5 379 57.0
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 2.8e-115 419.5 360 59.4
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.8e-114 416.8 366 58.7
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 5.3e-114 415.2 380 56.8
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 5.3e-114 415.2 355 58.6
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.2e-113 414.1 380 54.7
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.2e-113 414.1 378 55.0
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 2.0e-113 413.3 362 56.4
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 4.5e-113 412.1 367 58.9
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 5.9e-113 411.8 379 56.7
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 7.7e-113 411.4 398 54.8
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 2.9e-112 409.5 255 71.4
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 1.4e-111 407.1 259 72.6
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 2.5e-111 406.4 338 58.3
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 4.2e-111 405.6 380 54.7
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 9.4e-111 404.4 344 58.4
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 2.1e-110 403.3 367 54.2
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.1e-110 403.3 367 54.2
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 2.1e-110 403.3 341 58.9
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 2.1e-110 403.3 382 56.8
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 4.7e-110 402.1 257 71.6
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 6.1e-110 401.7 332 60.5
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 6.1e-110 401.7 244 73.8
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.3e-109 399.8 244 73.8
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.0e-109 399.4 361 55.1
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 8.8e-109 397.9 361 54.6
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 8.8e-109 397.9 376 54.5
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 7.4e-108 394.8 361 54.3
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.7e-107 393.7 376 54.0
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 6.3e-107 391.7 376 55.9
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 8.2e-107 391.3 336 58.0
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.4e-106 390.6 363 53.7
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 3.1e-106 389.4 352 56.2
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 4.1e-106 389.0 357 54.9
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 5.9e-105 385.2 366 55.7
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 2.2e-104 383.3 371 52.3
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 2.9e-104 382.9 368 52.4
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 3.8e-104 382.5 371 52.8
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.0e-104 382.1 363 52.6
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 8.5e-104 381.3 363 52.6
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 5.5e-103 378.6 339 58.4
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 5.5e-103 378.6 344 57.0
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 7.2e-103 378.3 344 56.7
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 7.2e-103 378.3 257 69.3
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 9.4e-103 377.9 364 56.0
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 2.1e-102 376.7 364 56.0
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 2.7e-102 376.3 387 50.4
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 3.6e-102 375.9 362 51.9
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 6.1e-102 375.2 379 53.3
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.0e-101 374.4 340 55.0
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 1.0e-101 374.4 371 52.3
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.8e-101 373.6 379 52.8
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 2.0e-100 370.2 338 55.9
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.6e-100 369.8 362 53.6
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 2.6e-100 369.8 376 52.7
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 9.7e-100 367.9 379 49.6
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 9.7e-100 367.9 407 50.1
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 4.8e-99 365.5 379 49.3
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.1e-98 364.4 361 54.6
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.4e-98 364.0 361 53.5
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.2e-97 360.9 338 54.7
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 1.6e-97 360.5 360 53.1
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 3.5e-97 359.4 368 52.4
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.0e-96 357.8 356 53.1
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 8.5e-96 354.8 362 53.6
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 2.3e-93 346.7 365 49.9
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 1.2e-92 344.4 199 79.9
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.5e-92 344.0 375 49.9
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 2.2e-91 340.1 254 63.4
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 4.1e-90 335.9 344 52.0
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 5.3e-90 335.5 339 52.2
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.6e-89 334.0 363 50.1
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.7e-88 330.5 311 57.9
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.7e-88 330.5 354 49.2
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 2.9e-88 329.7 306 52.9
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 5.5e-87 325.5 339 51.6
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.1e-86 323.6 368 50.3
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 1.7e-83 313.9 338 50.6
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 1.1e-82 311.2 249 60.2
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.4e-82 310.1 363 47.4
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 3.8e-80 302.8 362 47.0
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.1e-78 295.4 293 55.3
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.2e-73 281.2 322 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 5.6e-71 272.3 242 55.8
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.1e-70 270.4 238 54.2
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.8e-69 265.4 273 53.5
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.2e-68 264.6 378 40.2
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 1.0e-64 251.5 370 40.0
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 8.6e-64 248.4 183 64.5
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 1.3e-59 234.6 378 38.9
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.7e-59 234.2 276 47.1
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 4.1e-58 229.6 321 43.9
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.0e-56 223.4 221 53.8
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 8.6e-56 221.9 250 48.8
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 5.2e-53 212.6 258 48.1
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.7e-49 200.3 132 69.7
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 3.4e-44 183.3 183 52.5
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 3.0e-40 170.2 183 47.0
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 1.1e-39 168.3 148 54.1
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 2.5e-39 167.2 126 62.7
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.9e-29 132.5 158 45.6
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 5.1e-24 116.3 310 30.6
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 7.4e-23 112.5 81 63.0
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 1.2e-20 105.1 161 44.1
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 9.3e-18 95.5 74 60.8
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 3.5e-17 93.6 101 48.5
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.0e-16 92.0 105 41.9
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 1.0e-16 92.0 64 57.8
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 1.8e-16 91.3 67 53.7
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 4.5e-12 76.6 86 59.3
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.5e-10 70.9 90 50.0
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 9.3e-10 68.9 72 61.1
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 1.2e-09 68.6 122 35.2


User provided reference genes

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