Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu015891.1 Olea europaea HOM05D000924 ORTHO05D010685 6.9e-69 263.8 132 100.0
Lj5C314G2 Lonicera japonica HOM05D000924 ORTHO05D001209 2.4e-21 105.9 121 53.7
Migut.C00343 Erythranthe guttata HOM05D000924 ORTHO05D001209 1.5e-20 103.2 67 80.6
DCAR_003081 Daucus carota HOM05D000924 ORTHO05D001209 2.0e-20 102.8 122 53.3
Solyc06g082100.4 Solanum lycopersicum HOM05D000924 ORTHO05D001209 1.3e-19 100.1 121 50.4
PGSC0003DMG400030366 Solanum tuberosum HOM05D000924 ORTHO05D001209 1.3e-19 100.1 121 50.4
PGR083G1659 Punica granatum HOM05D000924 ORTHO05D001209 2.2e-19 99.4 121 52.1
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 2.2e-19 99.4 123 51.2
CAN.G1095.6 Capsicum annuum HOM05D000924 ORTHO05D001209 2.9e-19 99.0 121 49.6
Dinv32321 Davidia involucrata HOM05D000924 ORTHO05D001209 2.9e-19 99.0 122 51.6
unitig_26.g9847 Utricularia gibba HOM05D000924 ORTHO05D001209 2.9e-19 99.0 125 50.4
Lj5A314T76 Lonicera japonica HOM05D000924 ORTHO05D001209 5.0e-19 98.2 121 52.1
Dinv10292 Davidia involucrata HOM05D000924 ORTHO05D001209 1.1e-18 97.1 124 51.6
CiPaw.07G131100 Carya illinoinensis HOM05D000924 ORTHO05D001209 1.9e-18 96.3 121 51.2
COL.COLO4_20702 Corchorus olitorius HOM05D000924 ORTHO05D001209 1.9e-18 96.3 122 51.6
FvH4_5g21940 Fragaria vesca HOM05D000924 ORTHO05D001209 2.5e-18 95.9 122 51.6
FAN08G2720 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.5e-18 95.9 122 51.6
FAN18G2116 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.5e-18 95.9 122 51.6
Peaxi162Scf00064g01426 Petunia axillaris HOM05D000924 ORTHO05D001209 2.5e-18 95.9 67 74.6
SGA_v2.0_scaffold161G37860 Striga asiatica HOM05D000924 ORTHO05D001209 2.5e-18 95.9 121 49.6
Hma1.2p1_0914F.1_g236150 Hydrangea macrophylla HOM05D000924 ORTHO05D001209 3.2e-18 95.5 124 49.2
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 3.2e-18 95.5 122 50.8
Thecc.10G149400 Theobroma cacao HOM05D000924 ORTHO05D001209 4.2e-18 95.1 122 50.0
Gohir.A10G187300 Gossypium hirsutum HOM05D000924 ORTHO05D001209 5.5e-18 94.7 122 50.0
Gohir.D10G194400 Gossypium hirsutum HOM05D000924 ORTHO05D001209 5.5e-18 94.7 122 50.0
Gorai.011G217300 Gossypium raimondii HOM05D000924 ORTHO05D001209 5.5e-18 94.7 122 50.0
GSVIVG01010769001 Vitis vinifera HOM05D000924 ORTHO05D001209 5.5e-18 94.7 123 52.8
Cfa014157 Carpinus fangiana HOM05D000924 ORTHO05D001209 7.2e-18 94.4 121 50.4
Haze_22879 Corylus avellana HOM05D000924 ORTHO05D001209 7.2e-18 94.4 121 50.4
ECA246G0163 Erigeron canadensis HOM05D000924 ORTHO05D001209 9.4e-18 94.0 125 49.6
RcHm_v2.0_Chr7g0209461 Rosa chinensis HOM05D000924 ORTHO05D001209 9.4e-18 94.0 121 51.2
Sed0004818 Sechium edule HOM05D000924 ORTHO05D001209 9.4e-18 94.0 120 51.7
Cpa.g.sc36.108 Carica papaya HOM05D000924 ORTHO05D001209 1.2e-17 93.6 122 48.4
Duzib128G1905 Durio zibethinus HOM05D000924 ORTHO05D001209 1.2e-17 93.6 122 49.2
Potri.015G095500 Populus trichocarpa HOM05D000924 ORTHO05D001209 1.2e-17 93.6 121 50.4
Sabra15G0116500 Salix brachista HOM05D000924 ORTHO05D001209 1.2e-17 93.6 121 49.6
Haze_17095 Corylus avellana HOM05D000924 ORTHO05D001209 1.6e-17 93.2 122 49.2
Eucgr.F01825 Eucalyptus grandis HOM05D000924 ORTHO05D001209 1.6e-17 93.2 118 50.0
Actinidia17090 Actinidia chinensis HOM05D000924 ORTHO05D001209 2.1e-17 92.8 124 49.2
Cc02_g28440 Coffea canephora HOM05D000924 ORTHO05D001209 2.1e-17 92.8 124 49.2
FAN13G1554 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.1e-17 92.8 122 50.8
Manes.18G005100 Manihot esculenta HOM05D000924 ORTHO05D001209 2.1e-17 92.8 122 48.4
Migut.N01909 Erythranthe guttata HOM05D000924 ORTHO05D001209 2.7e-17 92.4 67 74.6
arahy.Tifrunner.gnm1.ann1.L2QDU1 Arachis hypogaea HOM05D000924 ORTHO05D001209 3.6e-17 92.0 119 47.9
CSS0036316 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D001209 3.6e-17 92.0 124 50.0
COL.COLO4_18725 Corchorus olitorius HOM05D000924 ORTHO05D001209 4.7e-17 91.7 122 49.2
Sc15g0004020 Simmondsia chinensis HOM05D000924 ORTHO05D001209 6.1e-17 91.3 122 49.2
Potri.012G097300 Populus trichocarpa HOM05D000924 ORTHO05D001209 8.0e-17 90.9 120 49.2
MD04G1240400 Malus domestica HOM05D000924 ORTHO05D001209 1.0e-16 90.5 122 48.4
MD12G1257300 Malus domestica HOM05D000924 ORTHO05D001209 1.0e-16 90.5 122 48.4
Prupe.6G358100 Prunus persica HOM05D000924 ORTHO05D001209 1.0e-16 90.5 122 49.2
arahy.Tifrunner.gnm1.ann1.1JT8J9 Arachis hypogaea HOM05D000924 ORTHO05D001209 1.4e-16 90.1 119 47.1
arahy.Tifrunner.gnm1.ann1.JY4JA5 Arachis hypogaea HOM05D000924 ORTHO05D001209 1.4e-16 90.1 119 47.1
CANSAT80G1721 Cannabis sativa HOM05D000924 ORTHO05D001209 1.4e-16 90.1 120 48.3
Rhsim06G0001600 Rhododendron simsii HOM05D000924 ORTHO05D001209 1.4e-16 90.1 123 48.0
MELO3C006732.2 Cucumis melo HOM05D000924 ORTHO05D001209 1.8e-16 89.7 120 49.2
TPR.G10336 Trifolium pratense HOM05D000924 ORTHO05D001209 1.8e-16 89.7 66 68.2
TPR.G25887 Trifolium pratense HOM05D000924 ORTHO05D001209 1.8e-16 89.7 66 68.2
Ca_03699_v3 Cicer arietinum L. HOM05D000924 ORTHO05D001209 2.3e-16 89.4 66 68.2
MBI15_g36602_MAGBIO Magnolia biondii HOM05D000924 ORTHO05D001209 2.3e-16 89.4 121 47.1
TWI14G0143 Tripterygium wilfordii HOM05D000924 ORTHO05D001209 2.3e-16 89.4 122 45.9
CsaV3_3G015340 Cucumis sativus L. HOM05D000924 ORTHO05D001209 3.9e-16 88.6 120 48.3
CDE06G2318 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 5.2e-16 88.2 122 47.5
ClCG05G006710 Citrullus lanatus HOM05D000924 ORTHO05D001209 6.7e-16 87.8 120 48.3
MSTRG.1010 Avicennia marina HOM05D000924 ORTHO05D001209 2.6e-15 85.9 125 48.0
Nitab4.5_0004954g0020 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.6e-15 85.9 68 70.6
Nitab4.5_0000110g0580 Nicotiana tabacum HOM05D000924 ORTHO05D001209 3.3e-15 85.5 122 47.5
SalBow7G0960 Salvia bowleyana HOM05D008298 ORTHO05D010685 5.7e-15 84.7 68 63.2
EL10Ac2g02545 Beta vulgaris HOM05D000924 ORTHO05D001209 7.4e-15 84.3 68 70.6
Carub.0001s2043 Capsella rubella HOM05D000924 ORTHO05D001209 7.4e-15 84.3 120 45.8
Thhalv10006525m.g Eutrema salsugineum HOM05D000924 ORTHO05D001209 7.4e-15 84.3 120 45.8
QL10p013857 Quercus lobata HOM05D000924 ORTHO05D001209 9.7e-15 84.0 122 45.1
AL1G33990 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 1.3e-14 83.6 120 45.8
Ciclev10010890m.g Citrus clementina HOM05D000924 ORTHO05D001209 1.3e-14 83.6 100 50.0
AUR62032373 Chenopodium quinoa HOM05D000924 ORTHO05D001209 1.7e-14 83.2 121 45.5
CDE07G1660 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 2.2e-14 82.8 121 46.3
Sopen06g033490 Solanum pennellii HOM05D000924 ORTHO05D001209 2.8e-14 82.4 96 53.1
C02p17050 Brassica napus HOM05D000924 ORTHO05D001209 3.7e-14 82.0 124 44.4
BolC2t07803H Brassica oleracea HOM05D000924 ORTHO05D001209 3.7e-14 82.0 124 44.4
BcaC06g34852 Brassica carinata HOM05D000924 ORTHO05D001209 4.8e-14 81.6 124 44.4
A07p15350 Brassica napus HOM05D000924 ORTHO05D001209 4.8e-14 81.6 124 44.4
C07p22650 Brassica napus HOM05D000924 ORTHO05D001209 4.8e-14 81.6 124 44.4
BolC7t42794H Brassica oleracea HOM05D000924 ORTHO05D001209 4.8e-14 81.6 124 44.4
BraA02t06099Z Brassica rapa HOM05D000924 ORTHO05D001209 4.8e-14 81.6 124 43.5
BraA07t29275Z Brassica rapa HOM05D000924 ORTHO05D001209 4.8e-14 81.6 124 44.4
Medtr2g064740 Medicago truncatula HOM05D000924 ORTHO05D001209 4.8e-14 81.6 66 65.2
AUR62024846 Chenopodium quinoa HOM05D000924 ORTHO05D001209 8.2e-14 80.9 107 46.7
Aa31LG7G5140 Aethionema arabicum HOM05D000924 ORTHO05D001209 1.1e-13 80.5 67 67.2
A02p10320 Brassica napus HOM05D000924 ORTHO05D001209 1.1e-13 80.5 124 43.5
Sp1g18660 Schrenkiella parvula HOM05D000924 ORTHO05D001209 1.1e-13 80.5 123 43.9
TAR369G0929 Trochodendron aralioides HOM05D000924 ORTHO05D001209 1.1e-13 80.5 126 43.7
ClCG05G013070 Citrullus lanatus HOM05D000924 ORTHO05D001209 1.4e-13 80.1 119 45.4
Nn6g31594 Nelumbo nucifera HOM05D000924 ORTHO05D001209 1.4e-13 80.1 123 44.7
vmacro14714 Vaccinium macrocarpon HOM05D000924 ORTHO05D001209 1.4e-13 80.1 73 65.8
Lsat_1_v5_gn_3_7441 Lactuca sativa HOM05D000924 ORTHO05D001209 1.8e-13 79.7 97 51.5
Lsat_1_v5_gn_3_7501 Lactuca sativa HOM05D000924 ORTHO05D001209 1.8e-13 79.7 97 51.5
Lalb_Chr25g0285181 Lupinus albus HOM05D000924 ORTHO05D001209 1.8e-13 79.7 121 43.0
QL04p003238 Quercus lobata HOM05D000924 ORTHO05D001209 2.4e-13 79.3 95 52.6
HanXRQChr17g0533721 Helianthus annuus HOM05D000924 ORTHO05D001209 3.1e-13 79.0 94 53.2
Ah.01g015930 Amaranthus hybridus HOM05D000924 ORTHO05D001209 4.1e-13 78.6 121 43.8
CANSAT78G0159 Cannabis sativa HOM05D000924 ORTHO05D001209 4.1e-13 78.6 130 44.6
ClCG11G018370 Citrullus lanatus HOM05D000924 ORTHO05D001209 5.3e-13 78.2 104 47.1
Glyma.08G173500 Glycine max HOM05D000924 ORTHO05D001209 5.3e-13 78.2 55 72.7
Phvul.005G055300 Phaseolus vulgaris HOM05D000924 ORTHO05D001209 5.3e-13 78.2 55 72.7
SEGI_03458 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 5.3e-13 78.2 124 41.9
C03p28130 Brassica napus HOM05D000924 ORTHO05D001209 7.0e-13 77.8 122 42.6
BolC3t15183H Brassica oleracea HOM05D000924 ORTHO05D001209 7.0e-13 77.8 122 42.6
BcaC01g05308 Brassica carinata HOM05D000924 ORTHO05D001209 9.1e-13 77.4 104 44.2
RcHm_v2.0_Chr2g0166221 Rosa chinensis HOM05D000924 ORTHO05D001209 9.1e-13 77.4 86 55.8
THA.LOC104812019 Tarenaya hassleriana HOM05D000924 ORTHO05D001209 9.1e-13 77.4 120 42.5
BcaB03g14290 Brassica carinata HOM05D000924 ORTHO05D001209 1.2e-12 77.0 123 43.1
Glyma.15G253800 Glycine max HOM05D000924 ORTHO05D001209 1.2e-12 77.0 50 76.0
VMungo1080G0748 Vigna mungo HOM05D000924 ORTHO05D001209 1.2e-12 77.0 55 70.9
Nitab4.5_0005694g0030 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.6e-12 76.6 121 45.5
Nitab4.5_0008569g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.6e-12 76.6 121 45.5
Carub.0004s2461 Capsella rubella HOM05D000924 ORTHO05D001209 2.6e-12 75.9 121 42.1
AT1G20960 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 3.5e-12 75.5 120 42.5
CARHR021420 Cardamine hirsuta HOM05D000924 ORTHO05D001209 3.5e-12 75.5 121 42.1
Aa31LG6G12910 Aethionema arabicum HOM05D000924 ORTHO05D001209 4.5e-12 75.1 66 63.6
Lj3g0017691 Lotus japonicus HOM05D000924 ORTHO05D001209 4.5e-12 75.1 98 46.9
SEGI_01233 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 4.5e-12 75.1 125 40.8
Aqoxy3G02568 Aquilegia oxysepala HOM05D000924 ORTHO05D001209 5.9e-12 74.7 126 43.7
Cc05_g03360 Coffea canephora HOM05D000924 ORTHO05D001209 5.9e-12 74.7 162 35.8
AT2G42270 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 2.2e-11 72.8 121 42.1
HanXRQChr12g0359471 Helianthus annuus HOM05D000924 ORTHO05D001209 2.9e-11 72.4 51 72.5
Nitab4.5_0002503g0090 Nicotiana tabacum HOM05D000924 ORTHO05D001209 3.8e-11 72.0 86 51.2
CARHR137320 Cardamine hirsuta HOM05D000924 ORTHO05D001209 6.5e-11 71.2 121 39.7
Nitab4.5_0007467g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 6.5e-11 71.2 122 42.6
SHI31129 Sapria himalayana HOM05D000924 ORTHO05D001209 6.5e-11 71.2 96 49.0
BcaB03g11743 Brassica carinata HOM05D000924 ORTHO05D001209 8.5e-11 70.9 65 61.5
Nitab4.5_0003811g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 8.5e-11 70.9 68 61.8
AL4G40630 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 1.1e-10 70.5 65 60.0
ATR0605G032 Amborella trichopoda HOM05D000924 ORTHO05D001209 2.5e-10 69.3 102 40.2
Nitab4.5_0026257g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 9.4e-10 67.4 74 51.4
PSO063G7524 Papaver somniferum HOM05D000924 ORTHO05D001209 2.7e-09 65.9 98 40.8
PSO782G5199 Papaver somniferum HOM05D000924 ORTHO05D001209 2.7e-09 65.9 98 40.8
AUR62024847 Chenopodium quinoa HOM05D000924 ORTHO05D001209 3.6e-09 65.5 42 78.6
Medtr4g011450 Medicago truncatula HOM05D000924 ORTHO05D001209 3.6e-09 65.5 53 64.2
BraA08t33566Z Brassica rapa HOM05D000924 ORTHO05D001209 6.1e-09 64.7 68 57.4
Ciclev10004124m.g Citrus clementina HOM05D000924 ORTHO05D001209 8.0e-09 64.3 69 58.0
RcHm_v2.0_Chr3g0448351 Rosa chinensis HOM05D000924 ORTHO05D001209 8.0e-09 64.3 51 62.7
FAN05G2437 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.4e-08 63.5 44 68.2
FAN09G1765 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.4e-08 63.5 44 68.2
FvH4_6g00860 Fragaria vesca HOM05D000924 ORTHO05D001209 1.8e-08 63.2 42 71.4
FAN14G0455 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.8e-08 63.2 42 71.4
AL5G18660 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 2.3e-08 62.8 70 57.1
ECA232G3463 Erigeron canadensis HOM05D000924 ORTHO05D001209 2.3e-08 62.8 69 59.4
Lsat_1_v5_gn_4_157361 Lactuca sativa HOM05D000924 ORTHO05D001209 4.0e-08 62.0 100 43.0
Sopen06g027930 Solanum pennellii HOM05D000924 ORTHO05D001209 4.0e-08 62.0 71 59.2
Os02g0106966 Oryza sativa ssp. japonica HOM05D000924 ORTHO05D001209 5.2e-08 61.6 44 65.9
FAN09G2563 Fragaria x ananassa HOM05D000924 ORTHO05D001209 8.8e-08 60.8 68 51.5
CAN.G993.32 Capsicum annuum HOM05D000924 ORTHO05D001209 1.2e-07 60.5 110 40.0
SMO347G0607 Selaginella moellendorffii HOM05D000924 ORTHO05D001209 1.2e-07 60.5 66 51.5
FAN05G4579 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.5e-07 60.1 68 51.5
Zm00001eb328850 Zea mays HOM05D000924 ORTHO05D001209 1.5e-07 60.1 73 52.1
Oeu033004.1 Olea europaea HOM05D000924 ORTHO05D290087 2.6e-07 59.3 33 81.8
MD09G1063000 Malus domestica HOM05D000924 ORTHO05D001209 4.4e-07 58.5 72 48.6
C02p36640 Brassica napus HOM05D000924 ORTHO05D001209 9.7e-07 57.4 77 48.1
Pp3c1_35880 Physcomitrium patens HOM05D000924 ORTHO05D001209 9.7e-07 57.4 69 49.3
A02p22840 Brassica napus HOM05D000924 ORTHO05D001209 1.3e-06 57.0 51 62.7
Os03g0743800 Oryza sativa ssp. japonica HOM05D000924 ORTHO05D001209 2.2e-06 56.2 58 53.4
CBR_g70690 Chara braunii HOM05D000924 ORTHO05D001209 2.8e-06 55.8 119 30.3
FvH4_6g47191 Fragaria vesca HOM05D000924 ORTHO05D001209 2.8e-06 55.8 68 48.5
FAN14G3354 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.8e-06 55.8 68 48.5
Mapoly0043s0081 Marchantia polymorpha HOM05D000924 ORTHO05D001209 2.8e-06 55.8 72 48.6
Solyc06g071620.3 Solanum lycopersicum HOM05D000924 ORTHO05D001209 2.8e-06 55.8 71 53.5
BcaC03g15896 Brassica carinata HOM05D000924 ORTHO05D001209 6.3e-06 54.7 51 60.8
BolC2t09659H Brassica oleracea HOM05D000924 ORTHO05D001209 6.3e-06 54.7 51 62.7
Nitab4.5_0004689g0010 Nicotiana tabacum HOM05D000924 ORTHO05D012842 6.3e-06 54.7 69 53.6


User provided reference genes

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