Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 4.0e-208 728.0 411 100.0
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 4.6e-172 608.2 408 84.8
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 4.6e-172 608.2 408 84.8
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 7.4e-170 600.9 408 84.3
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 9.6e-170 600.5 408 83.6
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 6.2e-169 597.8 406 85.5
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 6.2e-169 597.8 405 84.9
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 6.2e-169 597.8 406 83.7
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 2.4e-168 595.9 408 83.1
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 4.0e-168 595.1 409 83.4
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 2.0e-167 592.8 408 82.8
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 2.6e-167 592.4 426 80.3
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 5.8e-167 591.3 408 83.1
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 1.7e-166 589.7 408 82.4
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 6.5e-166 587.8 406 82.3
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 6.5e-166 587.8 406 82.8
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 3.2e-165 585.5 406 82.0
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 1.6e-164 583.2 409 82.2
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 1.6e-164 583.2 408 82.1
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 1.0e-163 580.5 411 81.8
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 1.0e-163 580.5 411 81.8
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 2.3e-163 579.3 406 82.0
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 2.3e-163 579.3 406 81.8
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 4.3e-162 575.1 418 68.4
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 2.1e-161 572.8 408 79.7
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 3.7e-161 572.0 408 80.1
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.1e-160 570.5 411 82.5
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 1.2e-159 567.0 409 79.7
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 2.9e-158 562.4 407 80.1
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 5.0e-158 561.6 400 81.2
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 5.0e-158 561.6 424 75.9
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.1e-157 560.5 408 79.4
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 2.5e-157 559.3 411 78.6
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 3.2e-157 558.9 409 78.0
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 9.3e-157 557.4 408 80.9
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 1.0e-155 553.9 408 72.1
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 1.3e-155 553.5 409 76.8
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 1.8e-155 553.1 409 75.6
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 3.0e-155 552.4 409 76.5
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 9.7e-154 547.4 429 65.3
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.3e-153 547.0 407 77.1
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 1.3e-153 547.0 404 76.5
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 3.7e-153 545.4 410 74.1
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 8.2e-153 544.3 408 77.9
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 1.1e-152 543.9 409 78.2
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 4.5e-151 538.5 407 77.1
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 1.0e-150 537.3 525 56.6
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 2.2e-150 536.2 565 53.1
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 1.2e-148 530.4 408 78.7
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 3.6e-148 528.9 408 67.4
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 2.3e-147 526.2 406 73.6
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 2.2e-145 519.6 401 64.8
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 1.5e-143 513.5 435 71.3
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 2.0e-143 513.1 408 73.8
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 1.3e-142 510.4 411 72.5
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 1.7e-142 510.0 407 73.5
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 1.4e-141 506.9 407 73.0
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 1.6e-140 503.4 407 73.2
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 7.9e-140 501.1 406 71.4
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 1.0e-139 500.7 426 63.1
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 3.9e-139 498.8 407 72.5
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 5.1e-139 498.4 420 71.4
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 1.5e-138 496.9 406 72.4
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 2.0e-138 496.5 440 58.4
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 3.3e-138 495.7 398 72.4
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 1.2e-135 487.3 332 82.8
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 1.5e-135 486.9 415 67.7
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 1.5e-135 486.9 407 69.3
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 2.9e-134 482.6 407 70.8
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 3.8e-134 482.3 407 59.7
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 5.0e-134 481.9 468 60.5
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 1.1e-133 480.7 410 60.7
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 2.5e-133 479.6 406 70.7
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 7.2e-133 478.0 410 60.0
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 1.2e-132 477.2 415 68.2
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 2.1e-132 476.5 407 58.5
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 2.7e-132 476.1 407 70.5
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 4.7e-132 475.3 407 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 8.0e-132 474.6 415 57.8
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 1.8e-131 473.4 407 70.3
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 2.3e-131 473.0 384 73.7
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 6.3e-129 464.9 410 67.3
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.1e-128 464.2 389 63.2
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 1.6e-124 450.3 406 58.4
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 6.1e-124 448.4 272 81.2
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 8.0e-124 448.0 440 64.3
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 1.2e-114 417.5 414 58.0
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 4.9e-113 412.1 308 68.5
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 2.4e-104 383.3 405 61.0
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 3.5e-95 352.8 408 59.1
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 3.3e-93 346.3 408 52.5
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 2.7e-87 326.6 292 70.9
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 1.5e-82 310.8 299 57.9
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 5.6e-77 292.4 244 64.3
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 1.1e-69 268.1 220 79.1
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 2.5e-69 266.9 405 40.2
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 2.1e-60 237.3 189 73.5
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.8e-59 234.2 142 76.8
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 1.1e-56 224.9 217 58.1
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 1.5e-50 204.5 341 39.9
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 1.9e-48 197.6 163 81.6
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 3.3e-45 186.8 147 87.8
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 4.2e-40 169.9 188 64.9
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 9.4e-32 142.1 95 69.5
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 3.3e-29 133.7 91 75.8
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 3.4e-26 123.6 116 50.0
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 1.9e-24 117.9 154 50.0
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 1.8e-22 111.3 56 75.0
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 6.7e-22 109.4 144 39.6
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 4.1e-19 100.1 67 70.1
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 4.5e-18 96.7 101 58.4
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 2.9e-17 94.0 61 70.5
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.5e-16 90.9 70 65.7
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 9.4e-16 89.0 76 59.2
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 2.7e-15 87.4 75 65.3
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 2.3e-14 84.3 50 80.0
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 3.3e-13 80.5 44 72.7
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 1.4e-11 75.1 42 78.6
CAN.G220.75 Capsicum annuum HOM05D003335 ORTHO05D003853 4.1e-11 73.6 219 23.3
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 7.0e-11 72.8 217 24.0
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 2.0e-10 71.2 180 25.6
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 1.0e-09 68.9 70 58.6
Manes.15G045400 Manihot esculenta HOM05D003335 ORTHO05D003853 1.7e-09 68.2 222 23.0
Hma1.2p1_0736F.1_g210710 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 1.5e-08 65.1 224 24.6
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 1.5e-08 65.1 182 26.4
arahy.Tifrunner.gnm1.ann1.B12291 Arachis hypogaea HOM05D000836 ORTHO05D000709 4.2e-08 63.5 220 26.8
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 5.5e-08 63.2 179 26.8
arahy.Tifrunner.gnm1.ann1.AR1CII Arachis hypogaea HOM05D000836 ORTHO05D000709 9.4e-08 62.4 220 26.4
Prupe.1G047500 Prunus persica HOM05D003335 ORTHO05D003853 9.4e-08 62.4 180 25.0
Haze_18030 Corylus avellana HOM05D002332 ORTHO05D002509 1.6e-07 61.6 204 24.5
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 2.1e-07 61.2 176 23.9
CDE06G0876 Ceratophyllum demersum HOM05D000645 ORTHO05D008274 2.1e-07 61.2 221 20.8
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.1e-07 61.2 210 23.8
Lalb_Chr13g0302231 Lupinus albus HOM05D000836 ORTHO05D000709 3.6e-07 60.5 202 24.3
Medtr4g088675 Medicago truncatula HOM05D000836 ORTHO05D000709 4.7e-07 60.1 125 30.4
CiPaw.05G179300 Carya illinoinensis HOM05D002332 ORTHO05D002509 6.1e-07 59.7 203 24.1
CiPaw.16G042300 Carya illinoinensis HOM05D002332 ORTHO05D002509 6.1e-07 59.7 201 24.9
Psat0s4552g0080 Pisum sativum HOM05D002332 ORTHO05D002509 6.1e-07 59.7 199 22.6
Sabra14G0018600 Salix brachista HOM05D002332 ORTHO05D002509 6.1e-07 59.7 200 23.5
Cfa018082 Carpinus fangiana HOM05D002332 ORTHO05D002509 8.0e-07 59.3 202 23.8
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 8.0e-07 59.3 199 23.1
Thecc.04G263400 Theobroma cacao HOM05D003335 ORTHO05D003853 8.0e-07 59.3 217 22.6
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 1.0e-06 58.9 202 22.8
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 1.0e-06 58.9 202 22.8
Potri.014G027200 Populus trichocarpa HOM05D002332 ORTHO05D002509 1.0e-06 58.9 200 24.0
CDE04G1486 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 1.4e-06 58.5 176 25.6
Duzib151G0619 Durio zibethinus HOM05D003335 ORTHO05D003853 1.4e-06 58.5 217 22.6
Gohir.A09G227600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 1.4e-06 58.5 180 23.9
Medtr7g016970 Medicago truncatula HOM05D002332 ORTHO05D002509 1.4e-06 58.5 199 23.1
RcHm_v2.0_Chr6g0308111 Rosa chinensis HOM05D002332 ORTHO05D002509 1.4e-06 58.5 201 24.4
TPR.G22366 Trifolium pratense HOM05D002332 ORTHO05D002509 1.8e-06 58.2 199 22.6
ATR0021G051 Amborella trichopoda HOM05D002332 ORTHO05D002509 2.3e-06 57.8 196 24.0
CBR_g51007 Chara braunii HOM05D004669 ORTHO05D005767 2.3e-06 57.8 196 24.0
Lj1A1203T32 Lonicera japonica HOM05D000836 ORTHO05D000709 2.3e-06 57.8 182 24.7
Ca_06907_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 3.0e-06 57.4 198 24.2
Gorai.006G251300 Gossypium raimondii HOM05D003335 ORTHO05D003853 3.0e-06 57.4 217 22.1
TPR.G37778 Trifolium pratense HOM05D004669 ORTHO05D005767 3.0e-06 57.4 178 24.7
Glyma.09G084600 Glycine max HOM05D004669 ORTHO05D005767 4.0e-06 57.0 176 23.9
Ah.08g209920 Amaranthus hybridus HOM05D004669 ORTHO05D005767 5.2e-06 56.6 176 25.6
Rhsim13G0179400 Rhododendron simsii HOM05D000836 ORTHO05D000709 5.2e-06 56.6 280 21.8
SalBow7G2328 Salvia bowleyana HOM05D002332 ORTHO05D002509 5.2e-06 56.6 221 21.7
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 6.8e-06 56.2 172 26.2
C03p21310 Brassica napus HOM05D000836 ORTHO05D000709 6.8e-06 56.2 147 28.6
Cc04_g03970 Coffea canephora HOM05D004669 ORTHO05D005767 6.8e-06 56.2 176 23.9
FAN20G1644 Fragaria x ananassa HOM05D002332 ORTHO05D002509 6.8e-06 56.2 199 23.6
MD15G1081000 Malus domestica HOM05D002332 ORTHO05D002509 6.8e-06 56.2 205 22.9
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 8.8e-06 55.8 166 24.1
FvH4_2g34270 Fragaria vesca HOM05D002332 ORTHO05D002509 8.8e-06 55.8 199 23.6
FAN15G0333 Fragaria x ananassa HOM05D002332 ORTHO05D002509 8.8e-06 55.8 199 23.6


User provided reference genes

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