Gene: AT5G60940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G60940
  • Transcript Identifier AT5G60940.1
  • Gene Type Coding gene
  • Location Chr5 : 24523092-24525655 : positive

Gene Family Information

  • ID HOM05D006809
  • #Genes/#Species 118/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G60940.1
  • uniprot Q8L4J2

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031124
IEA
Gene OntologymRNA 3'-end processing
GO:0031124
IEA
InterPromRNA 3'-end processing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex1
GO:0005848
IEA
GOA DatabasemRNA cleavage stimulating factor complex
GO:0005848
IBA
Gene OntologymRNA cleavage stimulating factor complex2
GO:0005848
IEA
InterPromRNA cleavage stimulating factor complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR044633 Cleavage stimulation factor subunit 1-like
Mapman id Description
16.3.1.3.3 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF50