Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.7e-221 772.3 372 100.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 5.4e-188 661.0 355 86.5
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 1.6e-184 649.4 355 85.6
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 5.3e-183 644.4 355 85.4
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 2.6e-182 642.1 358 84.6
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 5.8e-182 641.0 358 84.4
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 1.7e-181 639.4 358 84.4
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 8.4e-181 637.1 358 84.6
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 1.5e-177 626.3 358 82.4
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.5e-177 626.3 357 83.5
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 2.5e-177 625.5 356 83.1
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 3.3e-177 625.2 356 83.4
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 1.6e-176 622.9 358 82.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 1.1e-175 620.2 357 82.6
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 5.8e-174 614.4 356 82.0
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 1.3e-173 613.2 355 81.1
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 1.3e-173 613.2 356 82.3
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.9e-172 609.4 359 80.5
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.9e-172 609.4 359 81.1
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.4e-172 609.0 359 81.3
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 3.2e-172 608.6 356 80.6
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 4.6e-171 604.7 360 79.2
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 4.6e-171 604.7 359 79.7
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 8.7e-170 600.5 356 79.5
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 8.7e-170 600.5 356 79.5
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 8.7e-170 600.5 356 78.4
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 8.4e-165 583.9 361 78.4
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 7.1e-164 580.9 359 76.6
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 1.2e-163 580.1 359 76.9
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 2.7e-163 578.9 359 76.3
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 4.6e-163 578.2 359 77.2
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 4.6e-163 578.2 359 75.8
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 2.3e-162 575.9 360 75.0
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 3.9e-162 575.1 356 75.3
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 3.9e-162 575.1 356 75.6
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 7.4e-161 570.9 359 75.8
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 2.8e-160 568.9 363 74.7
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 2.8e-160 568.9 359 74.9
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 2.8e-160 568.9 399 69.9
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 4.8e-160 568.2 359 75.2
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 1.4e-159 566.6 363 74.7
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 1.8e-159 566.2 365 75.1
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 1.8e-159 566.2 359 74.7
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 3.1e-159 565.5 359 75.2
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 4.1e-159 565.1 359 74.1
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 4.1e-159 565.1 359 74.9
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 6.9e-159 564.3 359 75.5
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 9.0e-159 563.9 361 75.1
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.5e-158 563.1 359 75.2
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 2.0e-158 562.8 359 74.4
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 2.6e-158 562.4 359 74.7
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 2.6e-158 562.4 365 74.8
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 3.4e-158 562.0 360 74.2
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 3.4e-158 562.0 359 75.2
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 4.5e-158 561.6 359 74.7
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 5.9e-158 561.2 365 73.7
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 5.9e-158 561.2 365 73.7
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 1.3e-157 560.1 359 75.2
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 1.7e-157 559.7 359 74.7
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 2.2e-157 559.3 359 74.1
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 2.9e-157 558.9 356 73.9
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 5.0e-157 558.1 359 74.1
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 6.5e-157 557.8 359 74.4
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 1.1e-156 557.0 360 73.3
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 1.9e-156 556.2 363 73.6
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 5.5e-156 554.7 359 74.7
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 3.0e-154 548.9 362 73.8
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 4.3e-153 545.0 353 70.8
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 4.3e-153 545.0 378 69.8
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 6.3e-152 541.2 356 72.2
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.4e-151 539.3 356 72.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.4e-151 539.3 356 75.0
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 5.3e-151 538.1 361 70.9
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 4.5e-150 535.0 365 72.3
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 4.5e-150 535.0 361 70.4
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 6.5e-149 531.2 378 68.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 8.5e-149 530.8 356 70.2
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 1.1e-148 530.4 370 70.5
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 1.4e-148 530.0 378 68.0
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 1.9e-148 529.6 378 68.0
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 9.4e-148 527.3 378 68.0
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 9.4e-148 527.3 378 68.0
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 1.2e-147 526.9 361 69.8
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 6.1e-147 524.6 378 67.5
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 6.1e-147 524.6 378 67.5
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 6.1e-147 524.6 378 67.5
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 1.8e-146 523.1 357 69.5
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 8.8e-146 520.8 378 66.7
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 1.5e-145 520.0 378 66.9
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 8.2e-144 514.2 378 66.9
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 1.8e-143 513.1 378 66.7
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 1.5e-142 510.0 361 68.1
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 1.0e-133 480.7 368 62.0
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.7e-133 479.9 353 62.9
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.7e-133 479.9 370 61.6
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 1.1e-132 477.2 353 62.3
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.7e-125 453.4 353 59.5
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.7e-117 426.8 328 63.7
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.1e-115 418.3 327 58.4
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 1.0e-114 417.5 276 72.1
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 4.0e-114 415.6 263 74.5
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.8e-109 399.1 260 71.5
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 1.1e-108 397.5 259 70.7
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 9.5e-100 367.9 269 67.7
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.2e-99 367.5 269 67.7
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.8e-98 363.6 260 68.1
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 4.9e-96 355.5 400 48.2
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 6.8e-90 335.1 355 51.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 6.8e-82 308.5 238 66.8
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.1e-74 284.6 367 40.9
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-69 267.7 197 65.5
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-68 264.6 197 65.0
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 7.3e-68 261.9 157 77.1
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 4.8e-59 232.6 257 43.2
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.8e-56 223.0 270 50.4
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.1e-55 221.5 348 33.9
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 2.3e-45 187.2 410 28.8
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 6.7e-45 185.7 97 89.7
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 6.5e-40 169.1 109 73.4
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.5e-39 166.0 116 67.2
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 4.8e-35 152.9 92 72.8
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 5.0e-32 142.9 113 62.8
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-31 141.7 85 80.0
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 2.7e-30 137.1 85 77.6
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 9.1e-26 122.1 75 72.0
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.6e-25 120.6 72 81.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 2.8e-19 100.5 57 77.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 3.7e-19 100.1 67 70.1
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 5.3e-18 96.3 52 84.6
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-17 94.7 52 82.7
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 4.0e-13 80.1 87 51.7
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 4.0e-13 80.1 87 51.7
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 5.3e-10 69.7 76 51.3
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 2.1e-06 57.8 39 71.8


User provided reference genes

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