Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 2.1e-112 409.1 208 100.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.6e-83 313.2 208 75.5
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.2e-82 309.3 212 76.4
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.1e-81 307.0 205 77.6
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.5e-81 306.6 215 72.6
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 3.2e-81 305.4 173 87.9
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 9.4e-81 303.9 211 71.1
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 9.4e-81 303.9 208 71.2
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.8e-79 299.7 219 71.2
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 3.0e-79 298.9 208 72.6
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 2.0e-78 296.2 211 70.6
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 7.5e-78 294.3 219 68.5
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.7e-77 293.1 219 68.0
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 2.8e-77 292.4 212 72.2
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.1e-76 290.4 218 68.8
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 4.1e-76 288.5 208 69.2
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 5.3e-76 288.1 219 68.5
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.6e-75 286.6 220 68.2
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.0e-75 286.2 208 67.8
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 3.5e-75 285.4 218 68.8
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 4.5e-75 285.0 220 67.7
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 5.9e-75 284.6 208 70.7
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.3e-74 283.5 219 67.1
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 2.2e-74 282.7 220 65.9
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 3.8e-74 282.0 209 68.9
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 3.8e-74 282.0 219 67.6
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 3.2e-73 278.9 219 64.4
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 5.5e-73 278.1 208 66.8
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 9.4e-73 277.3 220 65.0
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 9.4e-73 277.3 207 64.7
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.2e-72 276.9 219 66.2
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.7e-72 275.8 219 64.8
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.7e-72 275.8 235 60.9
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 8.0e-72 274.2 203 70.4
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 2.3e-71 272.7 219 65.8
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.3e-71 272.7 220 65.9
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.8e-71 271.2 219 63.0
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 6.8e-71 271.2 211 67.3
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.2e-70 270.4 223 64.1
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.5e-70 270.0 220 65.0
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.5e-70 270.0 204 70.1
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 2.0e-70 269.6 223 64.6
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 2.6e-70 269.2 223 64.6
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 5.7e-70 268.1 193 67.9
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 7.5e-70 267.7 219 63.0
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.8e-70 267.3 220 65.5
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 9.8e-70 267.3 223 64.6
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-69 266.9 220 65.5
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.3e-69 266.9 223 64.1
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 2.2e-69 266.2 223 64.6
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 2.8e-69 265.8 220 65.0
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 2.8e-69 265.8 223 63.7
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 6.3e-69 264.6 187 72.7
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 8.3e-69 264.2 223 62.8
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.3e-69 264.2 220 64.5
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.3e-69 264.2 220 64.5
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.3e-69 264.2 220 64.5
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.1e-68 263.8 264 54.5
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.8e-68 263.1 221 63.8
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.4e-68 262.7 217 65.0
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 3.1e-68 262.3 213 66.2
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.1e-68 262.3 220 64.1
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.1e-68 262.3 220 64.1
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.1e-68 262.3 220 64.1
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 5.4e-68 261.5 255 58.8
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 7.0e-68 261.2 219 62.1
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.0e-68 261.2 220 64.1
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-67 260.4 220 63.6
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.6e-67 260.0 265 57.4
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.0e-67 259.6 188 70.2
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 4.5e-67 258.5 223 63.2
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 5.9e-67 258.1 210 63.3
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 5.9e-67 258.1 221 61.5
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 7.7e-67 257.7 219 62.1
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 7.7e-67 257.7 223 62.8
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.7e-66 256.5 219 61.2
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.9e-66 255.8 222 63.1
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 8.6e-66 254.2 213 62.0
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.5e-65 253.4 218 60.6
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 3.3e-65 252.3 219 61.6
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 4.2e-65 251.9 223 61.9
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 7.2e-65 251.1 222 60.4
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.2e-64 250.4 218 60.6
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 1.2e-64 250.4 187 69.0
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.6e-64 250.0 219 60.7
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.6e-64 250.0 219 61.2
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.1e-64 249.6 219 60.7
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.8e-64 249.2 178 70.8
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 3.6e-64 248.8 222 59.9
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 3.6e-64 248.8 249 56.6
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 4.7e-64 248.4 210 61.9
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 4.7e-64 248.4 225 61.3
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 8.0e-64 247.7 225 59.6
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.8e-63 246.5 222 59.0
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 2.3e-63 246.1 218 60.6
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.3e-63 246.1 225 59.1
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.0e-63 245.7 218 60.6
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.0e-63 245.7 218 60.6
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 6.8e-63 244.6 218 60.1
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 6.8e-63 244.6 218 59.6
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 8.9e-63 244.2 219 60.7
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 8.9e-63 244.2 189 65.6
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.2e-62 243.8 218 59.6
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.5e-62 243.4 218 60.1
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 3.4e-62 242.3 218 59.6
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 3.4e-62 242.3 218 59.6
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.4e-62 242.3 218 60.1
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 5.7e-62 241.5 218 59.2
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 7.5e-62 241.1 189 65.1
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.8e-61 239.2 221 58.8
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 4.9e-61 238.4 226 58.4
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 4.9e-61 238.4 207 63.3
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 4.9e-61 238.4 252 55.2
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.2e-59 233.8 245 53.5
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.7e-59 232.6 232 56.0
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.9e-57 226.5 179 67.0
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 2.3e-55 219.5 234 53.4
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.2e-55 218.4 198 61.1
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 8.3e-53 211.1 185 60.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 3.5e-51 205.7 191 57.1
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.5e-51 205.7 164 67.1
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 4.7e-48 195.3 346 38.2
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 5.4e-44 181.8 133 70.7
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 5.4e-44 181.8 133 69.9
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-42 177.6 150 65.3
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.0e-42 177.6 168 57.7
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.9e-41 173.3 148 63.5
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 2.5e-41 172.9 182 53.8
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.8e-40 169.5 148 63.5
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 5.2e-39 165.2 157 59.2
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.2e-38 164.1 104 80.8
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 6.4e-37 158.3 138 62.3
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 3.2e-36 156.0 137 67.2
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 1.9e-33 146.7 137 62.0
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 2.5e-33 146.4 116 62.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 7.3e-33 144.8 138 60.1
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 2.2e-29 133.3 173 42.8
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 2.9e-29 132.9 171 43.3
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.4e-28 130.6 93 68.8
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 2.4e-28 129.8 169 42.6
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.2e-27 127.5 88 70.5
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 6.0e-27 125.2 104 62.5
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 4.3e-25 119.0 181 38.1
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 1.6e-24 117.1 140 51.4
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 9.0e-23 111.3 112 55.4
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.5e-22 110.5 93 58.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.7e-19 99.8 68 64.7
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 8.1e-16 88.2 128 40.6
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 3.8e-13 79.3 54 68.5
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 9.3e-12 74.7 50 68.0
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 9.0e-07 58.2 174 31.0
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 7.6e-06 55.1 152 28.3


User provided reference genes

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