Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 0.0e+00 3214.9 1620 100.0
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 0.0e+00 1611.7 1651 55.1
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 0.0e+00 1191.4 1416 48.9
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 0.0e+00 1159.4 1697 42.6
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 0.0e+00 1117.8 1587 44.4
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 0.0e+00 1112.1 1481 45.8
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 0.0e+00 1092.8 1682 42.2
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 0.0e+00 1079.7 1687 41.7
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 1.1e-311 1073.9 1693 41.3
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.4e-296 1023.8 1779 39.5
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 5.5e-285 985.3 1762 38.8
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 5.5e-285 985.3 1610 40.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.7e-278 963.8 1744 38.4
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 5.5e-277 958.7 1682 39.4
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.4e-272 944.1 1688 38.9
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.2e-262 910.2 1636 39.5
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 1.4e-261 907.5 1706 37.6
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 3.2e-261 906.4 1173 47.2
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.6e-260 904.0 1178 46.6
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 4.8e-257 892.5 1723 36.3
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 1.4e-256 891.0 1693 36.9
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.8e-254 882.9 1699 36.3
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 1.5e-253 880.9 1490 39.7
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 3.2e-253 879.8 1708 36.1
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 5.2e-251 872.5 1720 37.3
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.5e-250 870.9 1705 37.4
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 4.4e-250 869.4 1699 36.1
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.8e-248 864.0 1702 35.8
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 2.4e-248 863.6 1702 37.5
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 1.2e-247 861.3 1697 36.9
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 1.9e-245 854.0 1689 36.4
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.0e-242 844.0 1141 45.0
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 1.1e-240 838.2 1673 36.3
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 2.0e-239 833.9 1666 37.0
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 3.6e-236 823.2 1509 37.2
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 2.0e-234 817.4 1480 36.8
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 1.2e-231 808.1 1635 35.8
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 1.2e-231 808.1 1766 34.9
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 5.0e-230 802.7 1760 33.5
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 5.0e-230 802.7 1762 34.6
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.1e-229 801.6 1706 35.3
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 4.3e-229 799.7 1699 35.4
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 2.8e-228 797.0 1635 35.7
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 2.3e-227 793.9 1693 35.1
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.4e-224 784.6 1693 34.7
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 9.2e-224 781.9 1706 35.2
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 3.5e-223 780.0 1706 35.0
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 8.6e-222 775.4 1701 34.9
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 1.9e-221 774.2 1701 34.3
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 1.2e-218 765.0 1697 35.7
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 3.4e-218 763.5 1731 34.8
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 4.1e-216 756.5 1697 34.1
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 3.9e-214 750.0 1678 34.0
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 2.5e-213 747.3 1699 33.8
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 6.8e-211 739.2 1691 33.8
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 1.1e-208 731.9 1592 35.0
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 5.4e-208 729.6 1703 34.0
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 2.1e-207 727.6 1707 34.2
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 4.6e-207 726.5 1709 34.0
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 1.7e-206 724.5 1704 34.1
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 2.1e-204 717.6 1709 34.3
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 3.1e-203 713.8 1763 33.2
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 6.8e-203 712.6 1735 33.0
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 6.8e-203 712.6 1731 32.6
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 3.4e-202 710.3 1666 33.7
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 9.9e-202 708.8 1771 33.0
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.7e-201 708.0 1681 33.1
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 8.4e-201 705.7 1661 34.0
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 3.9e-198 696.8 823 49.5
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.6e-196 691.4 1683 32.8
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.9e-192 677.9 1683 32.8
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-191 675.2 1746 31.8
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.0e-190 670.6 956 45.2
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.5e-189 667.5 1703 32.8
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.4e-184 649.8 1653 31.9
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 2.7e-183 647.5 1679 32.3
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 1.5e-178 631.7 775 47.2
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 1.5e-173 615.1 1763 31.4
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 1.9e-173 614.8 727 48.4
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 5.9e-162 576.6 1698 30.6
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 1.9e-160 571.6 1801 29.7
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 3.2e-160 570.9 1122 35.8
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 1.8e-150 538.5 1652 30.3
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 8.2e-148 529.6 1275 32.9
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 7.0e-147 526.6 1733 28.7
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 3.5e-146 524.2 1735 28.8
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.5e-141 508.8 1704 28.9
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 6.3e-140 503.4 1652 29.2
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 1.2e-133 482.6 1480 29.1
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.3e-126 458.4 1545 29.1
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 4.0e-126 457.6 1405 30.5
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 1.1e-120 439.5 661 41.5
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.1e-119 435.3 1609 28.0
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 2.0e-117 428.7 749 39.1
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 1.3e-116 426.0 823 35.6
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 5.4e-115 420.6 728 38.6
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 2.7e-114 418.3 655 41.1
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 5.9e-114 417.2 703 39.3
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 1.3e-108 399.4 1466 28.2
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 2.8e-103 381.7 1467 27.9
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 1.5e-88 332.8 713 35.6
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.2e-75 288.5 545 37.4
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 1.3e-71 276.6 566 35.9
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.9e-67 262.7 498 37.3
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 7.9e-58 230.7 498 35.9
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.5e-48 199.9 292 45.2
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 3.3e-48 198.7 1094 23.9
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 8.2e-47 194.1 490 32.0
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 4.5e-45 188.3 136 70.6
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 5.0e-44 184.9 222 47.3
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 1.6e-42 179.9 235 41.7
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.7e-39 168.7 1122 22.1
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.2e-34 153.7 237 39.7
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.6e-32 146.0 213 41.3
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 9.7e-32 144.1 256 33.2
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 2.4e-30 139.4 629 24.2
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 1.0e-25 124.0 311 35.4
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 2.6e-24 119.4 234 36.8
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.4e-16 92.4 200 36.0
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 4.8e-15 88.6 180 37.8
PSO339G5948 Papaver somniferum HOM05D007489 ORTHO05D008037 1.8e-14 86.7 329 27.4
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 7.0e-14 84.7 108 40.7
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.5e-12 78.2 107 42.1
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 4.2e-11 75.5 157 28.7
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 7.2e-11 74.7 209 31.6
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-10 73.9 104 38.5
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 4.4e-08 65.5 144 29.2
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 1.7e-07 63.5 138 27.5
MBI17_g46440_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D048546 2.8e-07 62.8 156 30.8
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 1.8e-06 60.1 84 45.2
Ah.07g206970 Amaranthus hybridus HOM05D005579 ORTHO05D006775 5.4e-06 58.5 185 28.1


User provided reference genes

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