Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30408 Nelumbo nucifera HOM05D000036 ORTHO05D000095 2.2e-49 198.7 107 100.0
Nn6g35741 Nelumbo nucifera HOM05D000036 ORTHO05D000095 2.0e-34 149.1 93 86.0
TAR362G0836 Trochodendron aralioides HOM05D000036 ORTHO05D000095 2.8e-20 102.1 94 61.7
Potri.003G072800 Populus trichocarpa HOM05D000036 ORTHO05D000095 1.8e-19 99.4 87 64.4
Actinidia21838 Actinidia chinensis HOM05D000036 ORTHO05D000095 1.2e-18 96.7 109 50.5
Actinidia24425 Actinidia chinensis HOM05D000036 ORTHO05D000095 3.4e-18 95.1 108 50.9
CSS0025482 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 5.8e-18 94.4 93 54.8
Cfa003460 Carpinus fangiana HOM05D000036 ORTHO05D000095 1.3e-17 93.2 94 54.3
Potri.001G162400 Populus trichocarpa HOM05D000036 ORTHO05D000095 2.2e-17 92.4 95 55.8
Manes.11G012500 Manihot esculenta HOM05D000036 ORTHO05D000095 1.1e-16 90.1 92 58.7
CiPaw.02G130900 Carya illinoinensis HOM05D000036 ORTHO05D000095 1.4e-16 89.7 94 53.2
Nn8g38511 Nelumbo nucifera HOM05D000036 ORTHO05D000095 2.4e-16 89.0 94 58.5
Gohir.A05G141700 Gossypium hirsutum HOM05D000036 ORTHO05D000095 5.5e-16 87.8 86 53.5
Gorai.009G147900 Gossypium raimondii HOM05D000036 ORTHO05D000095 5.5e-16 87.8 86 53.5
Sabra01G0130100 Salix brachista HOM05D000036 ORTHO05D000095 7.1e-16 87.4 96 55.2
QL05p000822 Quercus lobata HOM05D000036 ORTHO05D000095 1.2e-15 86.7 96 56.2
QL05p001169 Quercus lobata HOM05D000036 ORTHO05D000095 1.2e-15 86.7 96 56.2
Dinv20382 Davidia involucrata HOM05D000036 ORTHO05D000095 2.1e-15 85.9 99 50.5
Gohir.D05G144000 Gossypium hirsutum HOM05D000036 ORTHO05D000095 2.7e-15 85.5 86 51.2
Prupe.3G031000 Prunus persica HOM05D000036 ORTHO05D000095 4.6e-15 84.7 98 54.1
Atru.chr1.4155 Acer truncatum HOM05D000036 ORTHO05D000095 7.9e-15 84.0 96 57.3
CiPaw.01G211400 Carya illinoinensis HOM05D000036 ORTHO05D000095 1.0e-14 83.6 97 52.6
MD09G1172600 Malus domestica HOM05D000036 ORTHO05D000095 1.0e-14 83.6 95 50.5
Sabra03G0043600 Salix brachista HOM05D000036 ORTHO05D000095 1.3e-14 83.2 86 55.8
Lsat_1_v5_gn_4_92381 Lactuca sativa HOM05D000036 ORTHO05D000095 1.8e-14 82.8 94 46.8
Duzib235G0967 Durio zibethinus HOM05D000036 ORTHO05D000095 3.0e-14 82.0 89 50.6
Lj9A538T110 Lonicera japonica HOM05D000036 ORTHO05D000095 3.9e-14 81.6 97 50.5
Lj9A538T111 Lonicera japonica HOM05D000036 ORTHO05D000095 3.9e-14 81.6 97 50.5
Manes.16G089000 Manihot esculenta HOM05D000036 ORTHO05D000095 1.1e-13 80.1 77 61.0
Lsat_1_v5_gn_4_92001 Lactuca sativa HOM05D000036 ORTHO05D000095 3.3e-13 78.6 93 50.5
Peaxi162Scf00038g02343 Petunia axillaris HOM05D000036 ORTHO05D000095 4.3e-13 78.2 100 44.0
CSS0041029 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 7.4e-13 77.4 82 51.2
Thecc.06G130300 Theobroma cacao HOM05D000036 ORTHO05D000095 9.6e-13 77.0 88 48.9
Lsat_1_v5_gn_4_92360 Lactuca sativa HOM05D000036 ORTHO05D000095 1.3e-12 76.6 88 47.7
TWI14G1402 Tripterygium wilfordii HOM05D000036 ORTHO05D000095 1.3e-12 76.6 83 54.2
Lj5A29T57 Lonicera japonica HOM05D000036 ORTHO05D000095 2.1e-12 75.9 89 51.7
vmacro18770 Vaccinium macrocarpon HOM05D000036 ORTHO05D000095 2.1e-12 75.9 100 45.0
Nitab4.5_0008337g0060 Nicotiana tabacum HOM05D000036 ORTHO05D000095 3.7e-12 75.1 100 43.0
PGSC0003DMG400009178 Solanum tuberosum HOM05D000036 ORTHO05D000095 3.7e-12 75.1 88 48.9
Rhsim08G0244800 Rhododendron simsii HOM05D000036 ORTHO05D000095 4.8e-12 74.7 79 60.8
Rhsim08G0244900 Rhododendron simsii HOM05D000281 ORTHO05D000095 4.8e-12 74.7 99 47.5
CAN.G790.57 Capsicum annuum HOM05D000036 ORTHO05D000095 6.2e-12 74.3 100 44.0
Nitab4.5_0009489g0010 Nicotiana tabacum HOM05D000036 ORTHO05D000095 8.2e-12 73.9 100 43.0
Potri.001G162500 Populus trichocarpa HOM05D000036 ORTHO05D000095 1.1e-11 73.6 89 49.4
Potri.001G162600 Populus trichocarpa HOM05D000036 ORTHO05D000095 1.1e-11 73.6 89 49.4
Potri.003G002800 Populus trichocarpa HOM05D000036 ORTHO05D000095 1.1e-11 73.6 78 51.3
Manes.04G151000 Manihot esculenta HOM05D000036 ORTHO05D000095 3.1e-11 72.0 88 52.3
Cfa017737 Carpinus fangiana HOM05D000036 ORTHO05D000095 4.0e-11 71.6 91 49.5
Potri.003G002650 Populus trichocarpa HOM05D000036 ORTHO05D000095 4.0e-11 71.6 78 50.0
VMungo0331G0616 Vigna mungo HOM05D000036 ORTHO05D000095 4.0e-11 71.6 102 47.1
Ciclev10025238m.g Citrus clementina HOM05D000036 ORTHO05D000095 5.3e-11 71.2 97 50.5
CDE05G3636 Ceratophyllum demersum HOM05D000036 ORTHO05D000095 9.0e-11 70.5 70 54.3
Glyma.07G046033 Glycine max HOM05D000036 ORTHO05D000095 9.0e-11 70.5 92 46.7
Gohir.A10G047600 Gossypium hirsutum HOM05D000036 ORTHO05D000095 9.0e-11 70.5 88 48.9
Sopen03g041400 Solanum pennellii HOM05D000036 ORTHO05D000095 9.0e-11 70.5 86 46.5
FAN05G4839 Fragaria x ananassa HOM05D000036 ORTHO05D000095 1.2e-10 70.1 80 51.2
HanXRQChr12g0360071 Helianthus annuus HOM05D000036 ORTHO05D000095 1.5e-10 69.7 96 43.8
Phvul.009G261700 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 1.5e-10 69.7 92 47.8
RcHm_v2.0_Chr2g0147881 Rosa chinensis HOM05D000036 ORTHO05D000095 1.5e-10 69.7 82 51.2
Cfa003461 Carpinus fangiana HOM05D000036 ORTHO05D000095 2.6e-10 68.9 94 44.7
Glyma.16G014100 Glycine max HOM05D000036 ORTHO05D000095 3.4e-10 68.6 95 45.3
FvH4_6g35830 Fragaria vesca HOM05D000036 ORTHO05D000095 5.8e-10 67.8 80 50.0
FAN09G2838 Fragaria x ananassa HOM05D000036 ORTHO05D000095 5.8e-10 67.8 80 50.0
FAN14G3107 Fragaria x ananassa HOM05D000036 ORTHO05D000095 5.8e-10 67.8 80 50.0
Hma1.2p1_0229F.1_g097100 Hydrangea macrophylla HOM05D000036 ORTHO05D000095 5.8e-10 67.8 94 48.9
Potri.006G256700 Populus trichocarpa HOM05D000036 ORTHO05D000095 7.6e-10 67.4 83 45.8
Gorai.011G055100 Gossypium raimondii HOM05D000036 ORTHO05D000095 1.0e-09 67.0 78 48.7
HanXRQChr12g0360091 Helianthus annuus HOM05D000036 ORTHO05D000095 1.0e-09 67.0 93 47.3
Lsat_1_v5_gn_4_91821 Lactuca sativa HOM05D000036 ORTHO05D000095 1.0e-09 67.0 82 50.0
FAN02G2582 Fragaria x ananassa HOM05D000036 ORTHO05D000095 1.3e-09 66.6 80 48.8
Gohir.D10G051600 Gossypium hirsutum HOM05D000036 ORTHO05D000095 1.3e-09 66.6 83 47.0
HanXRQChr09g0277271 Helianthus annuus HOM05D000036 ORTHO05D000095 1.3e-09 66.6 87 44.8
MSTRG.10909 Avicennia marina HOM05D000036 ORTHO05D000095 2.2e-09 65.9 91 46.2
MD17G1154500 Malus domestica HOM05D000036 ORTHO05D000095 2.9e-09 65.5 95 44.2
Nitab4.5_0000357g0140 Nicotiana tabacum HOM05D000036 ORTHO05D000095 2.9e-09 65.5 97 45.4
Potri.018G051400 Populus trichocarpa HOM05D000036 ORTHO05D000095 2.9e-09 65.5 84 47.6
SalBow6G5618 Salvia bowleyana HOM05D000036 ORTHO05D000095 2.9e-09 65.5 91 49.5
Haze_16137 Corylus avellana HOM05D000036 ORTHO05D000095 3.8e-09 65.1 94 42.6
Gorai.009G039100 Gossypium raimondii HOM05D000036 ORTHO05D000095 4.9e-09 64.7 67 50.7
VMungo1309G0643 Vigna mungo HOM05D000036 ORTHO05D000095 4.9e-09 64.7 93 45.2
CANSAT56G0209 Cannabis sativa HOM05D000036 ORTHO05D000095 6.5e-09 64.3 81 49.4
HanXRQChr10g0311781 Helianthus annuus HOM05D000036 ORTHO05D000095 6.5e-09 64.3 78 47.4
QL05p001195 Quercus lobata HOM05D000036 ORTHO05D050620 6.5e-09 64.3 69 56.5
QL05p000790 Quercus lobata HOM05D000036 ORTHO05D000095 8.4e-09 63.9 82 47.6
QL05p001209 Quercus lobata HOM05D000036 ORTHO05D000095 8.4e-09 63.9 82 47.6
Gohir.A05G037100 Gossypium hirsutum HOM05D000036 ORTHO05D000095 1.1e-08 63.5 66 51.5
FAN14G5734 Fragaria x ananassa HOM05D000036 ORTHO05D000095 1.4e-08 63.2 80 47.5
Lsat_1_v5_gn_5_137700 Lactuca sativa HOM05D000036 ORTHO05D000095 1.4e-08 63.2 71 50.7
DCAR_022648 Daucus carota HOM05D000036 ORTHO05D000095 1.9e-08 62.8 82 42.7
CsaV3_7G033930 Cucumis sativus L. HOM05D000036 ORTHO05D000095 2.5e-08 62.4 68 51.5
ECA234G3528 Erigeron canadensis HOM05D000036 ORTHO05D000095 2.5e-08 62.4 72 48.6
PSO724G0061 Papaver somniferum HOM05D000036 ORTHO05D000095 3.2e-08 62.0 66 47.0
ClCG09G001400 Citrullus lanatus HOM05D000036 ORTHO05D000095 4.2e-08 61.6 81 49.4
TAR383G0323 Trochodendron aralioides HOM05D000036 ORTHO05D000095 4.2e-08 61.6 53 64.2
COL.COLO4_30870 Corchorus olitorius HOM05D000036 ORTHO05D000095 5.5e-08 61.2 86 44.2
HanXRQChr12g0360101 Helianthus annuus HOM05D000036 ORTHO05D000095 7.1e-08 60.8 82 45.1
Hund05702 Selenicereus undatus HOM05D000036 ORTHO05D000095 7.1e-08 60.8 72 45.8
Nitab4.5_0009778g0010 Nicotiana tabacum HOM05D000036 ORTHO05D000095 9.3e-08 60.5 98 44.9
Cpa.g.sc25.194 Carica papaya HOM05D000036 ORTHO05D000095 1.2e-07 60.1 69 49.3
PSO135G0289 Papaver somniferum HOM05D000036 ORTHO05D000095 2.1e-07 59.3 67 46.3
Phvul.010G123066 Phaseolus vulgaris HOM05D000036 ORTHO05D000095 2.1e-07 59.3 104 41.3
HanXRQChr09g0277261 Helianthus annuus HOM05D000036 ORTHO05D000095 4.6e-07 58.2 70 48.6
Sed0007675 Sechium edule HOM05D000036 ORTHO05D000095 4.6e-07 58.2 79 43.0
CARHR089480 Cardamine hirsuta HOM05D000036 ORTHO05D000095 7.9e-07 57.4 66 51.5
PSO781G0089 Papaver somniferum HOM05D000036 ORTHO05D000095 7.9e-07 57.4 69 40.6
Carub.0003s1401 Capsella rubella HOM05D000036 ORTHO05D000095 1.0e-06 57.0 66 50.0
AUR62001403 Chenopodium quinoa HOM05D000036 ORTHO05D000095 1.0e-06 57.0 72 45.8
Oeu015471.1 Olea europaea HOM05D000036 ORTHO05D000095 1.3e-06 56.6 86 47.7
MBI13_g01658_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D000095 1.8e-06 56.2 89 42.7
Actinidia09738 Actinidia chinensis HOM05D000036 ORTHO05D000095 2.3e-06 55.8 73 46.6
AUR62025614 Chenopodium quinoa HOM05D000036 ORTHO05D000095 2.3e-06 55.8 72 45.8
AUR62043502 Chenopodium quinoa HOM05D000036 ORTHO05D000095 2.3e-06 55.8 72 45.8
Thhalv10020354m.g Eutrema salsugineum HOM05D000036 ORTHO05D000095 2.3e-06 55.8 65 52.3
COL.COLO4_21185 Corchorus olitorius HOM05D000036 ORTHO05D000095 3.0e-06 55.5 74 45.9
AT3G14310 Arabidopsis thaliana HOM05D000036 ORTHO05D000095 5.1e-06 54.7 66 48.5
BcaC05g29095 Brassica carinata HOM05D000036 ORTHO05D000095 5.1e-06 54.7 68 48.5
A05p35090 Brassica napus HOM05D000036 ORTHO05D000095 5.1e-06 54.7 68 48.5
C05p53050 Brassica napus HOM05D000036 ORTHO05D000095 5.1e-06 54.7 68 48.5
BolC5t33986H Brassica oleracea HOM05D000036 ORTHO05D000095 5.1e-06 54.7 68 48.5
BraA05t22322Z Brassica rapa HOM05D000036 ORTHO05D000095 5.1e-06 54.7 68 48.5
EL10Ac7g16495 Beta vulgaris HOM05D000036 ORTHO05D000095 6.7e-06 54.3 75 41.3
A01p39380 Brassica napus HOM05D000036 ORTHO05D000095 6.7e-06 54.3 68 51.5
BraA01t03980Z Brassica rapa HOM05D000036 ORTHO05D000095 6.7e-06 54.3 68 51.5
Lj1g0020905 Lotus japonicus HOM05D000036 ORTHO05D000095 6.7e-06 54.3 63 54.0
BcaC09g48402 Brassica carinata HOM05D000036 ORTHO05D000095 8.7e-06 53.9 68 50.0
C01p50180 Brassica napus HOM05D000036 ORTHO05D000095 8.7e-06 53.9 68 50.0
QL05p000801 Quercus lobata HOM05D000036 ORTHO05D050620 8.7e-06 53.9 38 71.1


User provided reference genes

Program Settings