Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 8.6e-213 744.2 660 100.0
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 8.0e-134 481.9 689 76.6
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 8.9e-133 478.4 663 69.1
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 2.4e-130 470.3 656 72.1
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 7.5e-124 448.7 659 74.8
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 1.7e-120 437.6 651 72.0
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 3.0e-120 436.8 661 67.8
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 1.1e-119 434.9 659 69.7
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 8.0e-118 428.7 661 66.9
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 6.8e-117 425.6 624 71.2
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 2.6e-116 423.7 661 65.4
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 4.4e-116 422.9 592 69.9
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 3.7e-115 419.9 624 71.0
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 4.1e-114 416.4 659 68.9
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 2.7e-113 413.7 590 71.7
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 1.7e-112 411.0 659 66.2
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 8.6e-112 408.7 593 71.8
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 3.3e-111 406.8 594 71.9
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 3.6e-110 403.3 669 65.3
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 3.1e-109 400.2 606 67.2
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 3.1e-109 400.2 619 71.4
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 2.0e-108 397.5 666 64.0
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 2.6e-108 397.1 659 67.2
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 4.4e-108 396.4 666 64.1
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 5.8e-108 396.0 590 69.5
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 8.3e-107 392.1 622 70.4
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 1.4e-106 391.3 559 75.1
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 4.1e-106 389.8 595 77.3
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 4.6e-105 386.3 612 66.5
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 4.6e-105 386.3 617 66.1
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 6.0e-105 386.0 601 68.1
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 2.3e-104 384.0 591 69.0
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 6.6e-104 382.5 666 64.6
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 1.9e-103 380.9 618 67.3
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 2.5e-103 380.6 705 46.8
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 5.6e-103 379.4 580 72.4
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 5.6e-103 379.4 611 62.7
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 9.5e-103 378.6 628 61.3
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 1.6e-102 377.9 664 64.2
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 3.6e-102 376.7 636 63.7
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 3.6e-102 376.7 648 64.8
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 4.7e-102 376.3 628 62.7
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 1.1e-101 375.2 591 66.8
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.4e-101 374.8 628 61.1
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 1.8e-101 374.4 642 61.7
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 8.9e-101 372.1 662 63.6
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 3.4e-100 370.2 599 76.5
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 4.4e-100 369.8 599 76.5
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 7.6e-100 369.0 589 63.7
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 1.7e-99 367.9 642 61.5
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 8.4e-99 365.5 647 62.6
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 1.1e-98 365.2 591 65.7
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 1.5e-95 354.8 597 66.5
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 5.6e-95 352.8 621 64.6
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 1.2e-94 351.7 564 72.3
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 2.8e-94 350.5 532 71.1
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 8.1e-94 349.0 631 64.7
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 1.5e-92 344.7 582 74.9
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 4.4e-92 343.2 625 62.9
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.1e-90 338.6 586 66.7
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 3.2e-90 337.0 581 67.6
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 3.2e-90 337.0 659 52.8
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 4.2e-90 336.7 528 71.6
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 1.2e-89 335.1 591 71.4
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 1.3e-88 331.6 586 61.8
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 8.1e-86 322.4 528 69.9
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 1.8e-85 321.2 578 75.3
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 1.2e-84 318.5 578 72.8
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 1.5e-84 318.2 527 73.8
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 7.6e-84 315.8 578 71.1
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 3.8e-83 313.5 643 67.7
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 1.2e-81 308.5 567 67.7
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 5.1e-80 303.1 195 75.9
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 3.7e-78 297.0 591 61.4
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 7.6e-76 289.3 196 73.5
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 3.8e-75 287.0 196 71.4
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.1e-74 285.4 591 61.1
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 5.5e-74 283.1 197 71.1
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 9.3e-74 282.3 191 73.3
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 1.2e-73 282.0 643 61.9
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.0e-72 277.3 214 67.8
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 5.6e-71 273.1 580 41.4
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 1.8e-64 251.5 186 66.7
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 2.5e-63 247.7 167 73.7
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 5.7e-55 219.9 171 62.0
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 5.9e-52 209.9 229 59.8
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 2.9e-51 207.6 249 56.6
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 6.3e-46 189.9 533 63.4
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 1.3e-43 182.2 200 46.0
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 4.4e-39 167.2 148 58.8
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 6.5e-35 153.3 110 66.4
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 7.2e-34 149.8 124 62.9
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 9.7e-31 139.4 170 48.2
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 4.8e-30 137.1 138 52.9
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 9.1e-29 132.9 91 69.2
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 1.6e-28 132.1 139 68.3
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 9.5e-18 96.3 66 71.2
Pp3c24_4430 Physcomitrium patens HOM05D007322 ORTHO05D009029 6.8e-16 90.1 165 32.7
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 6.8e-08 63.5 49 63.3
Pp3c22_3230 Physcomitrium patens HOM05D003056 ORTHO05D003422 2.0e-07 62.0 136 23.5
QL10p041196 Quercus lobata HOM05D005973 ORTHO05D007285 2.6e-07 61.6 107 32.7
Medtr2g036560 Medicago truncatula HOM05D003056 ORTHO05D003422 9.8e-07 59.7 215 24.2
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 9.8e-07 59.7 121 28.1
TPR.G20572 Trifolium pratense HOM05D003056 ORTHO05D003422 9.8e-07 59.7 121 26.4
ATR0180G025 Amborella trichopoda HOM05D042338 ORTHO05D031092 1.3e-06 59.3 107 31.8
TPR.G37938 Trifolium pratense HOM05D005862 ORTHO05D007731 1.3e-06 59.3 127 25.2
VMungo1080G0196 Vigna mungo HOM05D005973 ORTHO05D007285 1.7e-06 58.9 102 26.5
Ca_02033_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 2.9e-06 58.2 121 25.6
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 2.9e-06 58.2 121 28.1
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 2.9e-06 58.2 121 27.3
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 2.9e-06 58.2 89 34.8
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 8.3e-06 56.6 100 32.0
CARHR183130 Cardamine hirsuta HOM05D001779 ORTHO05D001753 8.3e-06 56.6 100 31.0


User provided reference genes

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