Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27077 Nelumbo nucifera HOM05D001534 ORTHO05D017148 6.2e-58 227.3 116 100.0
Nn1g00139 Nelumbo nucifera HOM05D001534 ORTHO05D017148 2.4e-49 198.7 116 90.5
Nn2g11769 Nelumbo nucifera HOM05D001534 ORTHO05D003503 6.9e-49 197.2 116 87.9
TAR626G1331 Trochodendron aralioides HOM05D001534 ORTHO05D003503 7.4e-35 150.6 118 68.6
TAR629G2464 Trochodendron aralioides HOM05D001534 ORTHO05D003503 1.1e-33 146.7 117 70.1
Potri.001G359400 Populus trichocarpa HOM05D001534 ORTHO05D003503 3.3e-27 125.2 117 57.3
Duzib213G0269 Durio zibethinus HOM05D001534 ORTHO05D003503 5.7e-27 124.4 117 59.0
MBI16_g41928_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D003503 6.3e-26 120.9 120 60.8
Hma1.2p1_0036F.1_g023030 Hydrangea macrophylla HOM05D001534 ORTHO05D003503 1.1e-25 120.2 118 57.6
Thecc.07G026100 Theobroma cacao HOM05D001534 ORTHO05D003503 1.1e-25 120.2 117 58.1
Gohir.A04G011400 Gossypium hirsutum HOM05D001534 ORTHO05D003503 1.8e-25 119.4 117 56.4
Gohir.D05G375500 Gossypium hirsutum HOM05D001534 ORTHO05D003503 1.8e-25 119.4 117 56.4
Gorai.009G444100 Gossypium raimondii HOM05D001534 ORTHO05D003503 1.8e-25 119.4 117 56.4
TWI39G0531 Tripterygium wilfordii HOM05D001534 ORTHO05D003503 3.1e-25 118.6 117 55.6
Haze_09753 Corylus avellana HOM05D001534 ORTHO05D003503 5.9e-24 114.4 115 53.0
Sabra16G0237100 Salix brachista HOM05D001534 ORTHO05D003503 3.8e-23 111.7 117 52.1
Cfa020269 Carpinus fangiana HOM05D001534 ORTHO05D003503 1.1e-22 110.2 117 52.1
AUR62020321 Chenopodium quinoa HOM05D001534 ORTHO05D003503 1.5e-22 109.8 117 52.1
Atru.chr2.3540 Acer truncatum HOM05D001534 ORTHO05D003503 1.9e-22 109.4 117 50.4
Cpa.g.sc12.241 Carica papaya HOM05D001534 ORTHO05D003503 9.4e-22 107.1 117 49.6
Prupe.4G224900 Prunus persica HOM05D001534 ORTHO05D003503 1.2e-21 106.7 117 51.3
Actinidia00114 Actinidia chinensis HOM05D001534 ORTHO05D003503 1.6e-21 106.3 118 55.1
Dinv08700 Davidia involucrata HOM05D001534 ORTHO05D003503 2.7e-21 105.5 115 53.9
Rhsim06G0224300 Rhododendron simsii HOM05D001534 ORTHO05D003503 3.6e-21 105.1 118 52.5
AUR62015901 Chenopodium quinoa HOM05D001534 ORTHO05D003503 4.7e-21 104.8 117 50.4
Nitab4.5_0001393g0010 Nicotiana tabacum HOM05D001534 ORTHO05D003503 4.7e-21 104.8 118 52.5
Atru.chr2.3560 Acer truncatum HOM05D001534 ORTHO05D003503 6.1e-21 104.4 125 48.8
CAN.G492.25 Capsicum annuum HOM05D001534 ORTHO05D003503 8.0e-21 104.0 119 51.3
Oeu007991.1 Olea europaea HOM05D001534 ORTHO05D003503 8.0e-21 104.0 117 49.6
Ciclev10007970m.g Citrus clementina HOM05D001534 ORTHO05D003503 1.4e-20 103.2 116 50.9
Dinv40801 Davidia involucrata HOM05D001534 ORTHO05D003503 2.3e-20 102.4 118 52.5
CSS0020811 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D003503 3.0e-20 102.1 121 52.1
MD03G1192300 Malus domestica HOM05D001534 ORTHO05D003503 3.0e-20 102.1 116 48.3
Gorai.009G444300 Gossypium raimondii HOM05D001534 ORTHO05D003503 5.2e-20 101.3 118 50.8
CsaV3_7G003000 Cucumis sativus L. HOM05D001534 ORTHO05D003503 6.8e-20 100.9 116 50.9
Hund01948 Selenicereus undatus HOM05D001534 ORTHO05D003503 1.2e-19 100.1 118 49.2
Aqoxy1G04095 Aquilegia oxysepala HOM05D001534 ORTHO05D003503 1.5e-19 99.8 116 50.0
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 2.0e-19 99.4 100 56.0
FvH4_3g23640 Fragaria vesca HOM05D001534 ORTHO05D003503 2.0e-19 99.4 117 49.6
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 2.0e-19 99.4 117 49.6
MELO3C018875.2 Cucumis melo HOM05D001534 ORTHO05D003503 2.6e-19 99.0 116 50.0
Lj6g0018007 Lotus japonicus HOM05D001534 ORTHO05D003503 2.6e-19 99.0 116 50.0
Manes.03G135700 Manihot esculenta HOM05D001534 ORTHO05D003503 2.6e-19 99.0 131 44.3
PSO210G6494 Papaver somniferum HOM05D001534 ORTHO05D003503 5.7e-19 97.8 115 49.6
GSVIVG01030390001 Vitis vinifera HOM05D001534 ORTHO05D003503 7.5e-19 97.4 116 50.9
CANSAT11G2616 Cannabis sativa HOM05D001534 ORTHO05D003503 9.7e-19 97.1 118 52.5
Lalb_Chr20g0116141 Lupinus albus HOM05D001534 ORTHO05D017148 1.3e-18 96.7 117 47.9
arahy.Tifrunner.gnm1.ann1.FLZ4J4 Arachis hypogaea HOM05D001534 ORTHO05D003503 1.7e-18 96.3 117 47.9
vmacro22994 Vaccinium macrocarpon HOM05D001534 ORTHO05D003503 1.7e-18 96.3 118 50.8
RcHm_v2.0_Chr2g0157381 Rosa chinensis HOM05D001534 ORTHO05D003503 2.2e-18 95.9 118 49.2
MD17G1109200 Malus domestica HOM05D001534 ORTHO05D003503 2.8e-18 95.5 119 49.6
Manes.13G064400 Manihot esculenta HOM05D001534 ORTHO05D003503 2.8e-18 95.5 116 49.1
Nitab4.5_0004445g0040 Nicotiana tabacum HOM05D001534 ORTHO05D003503 2.8e-18 95.5 118 49.2
QL08p029804 Quercus lobata HOM05D001534 ORTHO05D003503 2.8e-18 95.5 114 50.0
PSO302G0157 Papaver somniferum HOM05D001534 ORTHO05D003503 3.7e-18 95.1 119 47.9
FAN16G3611 Fragaria x ananassa HOM05D001534 ORTHO05D003503 4.8e-18 94.7 116 48.3
TWI75G1639 Tripterygium wilfordii HOM05D001534 ORTHO05D003503 4.8e-18 94.7 118 50.0
arahy.Tifrunner.gnm1.ann1.C8Z9ST Arachis hypogaea HOM05D001534 ORTHO05D003503 6.3e-18 94.4 117 47.0
Eucgr.F00646 Eucalyptus grandis HOM05D001534 ORTHO05D003503 6.3e-18 94.4 116 50.9
Lj8C131G11 Lonicera japonica HOM05D001534 ORTHO05D003503 6.3e-18 94.4 118 50.0
PGSC0003DMG400014413 Solanum tuberosum HOM05D001534 ORTHO05D003503 6.3e-18 94.4 119 47.1
HPP92_020513 Vanilla planifolia HOM05D001534 ORTHO05D003503 8.3e-18 94.0 116 51.7
FAN25G2799 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.1e-17 93.6 116 47.4
Rhsim04G0046200 Rhododendron simsii HOM05D001534 ORTHO05D003503 1.1e-17 93.6 115 52.2
ClCG00G004150 Citrullus lanatus HOM05D001534 ORTHO05D003503 1.4e-17 93.2 115 50.4
ClCG02G002420 Citrullus lanatus HOM05D001534 ORTHO05D003503 1.4e-17 93.2 115 50.4
MELO3C014155.2 Cucumis melo HOM05D001534 ORTHO05D003503 1.4e-17 93.2 115 47.0
vmacro09377 Vaccinium macrocarpon HOM05D001534 ORTHO05D003503 1.8e-17 92.8 117 49.6
CANSAT56G4167 Cannabis sativa HOM05D001534 ORTHO05D003503 2.4e-17 92.4 117 50.4
RcHm_v2.0_Chr5g0041701 Rosa chinensis HOM05D001534 ORTHO05D003503 2.4e-17 92.4 117 47.0
Solyc10g006100.3 Solanum lycopersicum HOM05D001534 ORTHO05D003503 3.1e-17 92.0 119 47.1
FAN21G3843 Fragaria x ananassa HOM05D001534 ORTHO05D003503 4.1e-17 91.7 116 46.6
Hma1.2p1_0133F.1_g060880 Hydrangea macrophylla HOM05D001534 ORTHO05D003503 4.1e-17 91.7 114 53.5
Zm00001eb398430 Zea mays HOM05D001534 ORTHO05D003503 4.1e-17 91.7 114 46.5
Actinidia10787 Actinidia chinensis HOM05D001534 ORTHO05D017148 7.0e-17 90.9 117 47.9
MSTRG.6966 Avicennia marina HOM05D001534 ORTHO05D003503 9.1e-17 90.5 117 45.3
Cpa.g.sc132.59 Carica papaya HOM05D001534 ORTHO05D003503 1.2e-16 90.1 117 47.0
CsaV3_3G004570 Cucumis sativus L. HOM05D001534 ORTHO05D003503 1.2e-16 90.1 119 44.5
Sopen10g002050 Solanum pennellii HOM05D001534 ORTHO05D003503 1.2e-16 90.1 119 46.2
Cc05_g14400 Coffea canephora HOM05D001534 ORTHO05D003503 1.6e-16 89.7 120 45.8
Cfa014286 Carpinus fangiana HOM05D001534 ORTHO05D003503 3.5e-16 88.6 117 48.7
Sed0003822 Sechium edule HOM05D001534 ORTHO05D003503 4.5e-16 88.2 116 46.6
Gohir.D05G375350 Gossypium hirsutum HOM05D001534 ORTHO05D003503 1.0e-15 87.0 103 49.5
Sed0024846 Sechium edule HOM05D001534 ORTHO05D003503 1.3e-15 86.7 117 47.9
EL10Ac4g07675 Beta vulgaris HOM05D001534 ORTHO05D003503 1.7e-15 86.3 118 49.2
Ciclev10014827m.g Citrus clementina HOM05D001534 ORTHO05D003503 1.7e-15 86.3 116 46.6
MD09G1117900 Malus domestica HOM05D001534 ORTHO05D003503 1.7e-15 86.3 121 45.5
FvH4_6g41670 Fragaria vesca HOM05D001534 ORTHO05D003503 2.2e-15 85.9 117 44.4
Atru.chr6.3306 Acer truncatum HOM05D001534 ORTHO05D017148 2.9e-15 85.5 116 46.6
ClCG10G004920 Citrullus lanatus HOM05D001534 ORTHO05D003503 2.9e-15 85.5 115 45.2
COL.COLO4_31994 Corchorus olitorius HOM05D001534 ORTHO05D003503 3.8e-15 85.1 113 43.4
CsaV3_6G037540 Cucumis sativus L. HOM05D001534 ORTHO05D003503 6.5e-15 84.3 114 44.7
Phvul.006G049000 Phaseolus vulgaris HOM05D001534 ORTHO05D003503 6.5e-15 84.3 116 40.5
PGR083G1700 Punica granatum HOM05D001534 ORTHO05D003503 6.5e-15 84.3 121 43.8
Sabra14G0122800 Salix brachista HOM05D001534 ORTHO05D003503 6.5e-15 84.3 117 47.0
Glyma.18G089500 Glycine max HOM05D001534 ORTHO05D003503 8.5e-15 84.0 114 41.2
VMungo0540G2440 Vigna mungo HOM05D001534 ORTHO05D003503 1.5e-14 83.2 116 41.4
Lj8A174G68 Lonicera japonica HOM05D001534 ORTHO05D003503 1.9e-14 82.8 119 45.4
Os01g0510800 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D003503 1.9e-14 82.8 113 43.4
Ah.04g166260 Amaranthus hybridus HOM05D001534 ORTHO05D003503 3.2e-14 82.0 118 44.9
Potri.014G161100 Populus trichocarpa HOM05D001534 ORTHO05D003503 3.2e-14 82.0 117 44.4
Gohir.D05G375600 Gossypium hirsutum HOM05D001534 ORTHO05D003503 4.2e-14 81.6 118 46.6
Duzib133G0537 Durio zibethinus HOM05D001534 ORTHO05D003503 5.5e-14 81.3 113 43.4
SalBow8G3768 Salvia bowleyana HOM05D001534 ORTHO05D003503 7.2e-14 80.9 117 43.6
VMungo1383G1595 Vigna mungo HOM05D001534 ORTHO05D003503 9.4e-14 80.5 117 43.6
CiPaw.03G275100 Carya illinoinensis HOM05D001534 ORTHO05D003503 2.1e-13 79.3 116 44.0
CDE04G2962 Ceratophyllum demersum HOM05D001534 ORTHO05D003503 2.7e-13 79.0 114 43.0
DCAR_016645 Daucus carota HOM05D001534 ORTHO05D003503 4.7e-13 78.2 118 42.4
CDE06G1567 Ceratophyllum demersum HOM05D001534 ORTHO05D003503 8.0e-13 77.4 114 42.1
Ca_07287_v3 Cicer arietinum L. HOM05D001534 ORTHO05D003503 1.0e-12 77.0 118 44.1
DCAR_019732 Daucus carota HOM05D001534 ORTHO05D003503 1.0e-12 77.0 117 41.0
Glyma.08G322700 Glycine max HOM05D001534 ORTHO05D003503 1.0e-12 77.0 115 40.9
Cc05_g02930 Coffea canephora HOM05D001534 ORTHO05D003503 1.8e-12 76.3 115 43.5
GSVIVG01037737001 Vitis vinifera HOM05D001534 ORTHO05D003503 1.8e-12 76.3 119 46.2
ATR1101G058 Amborella trichopoda HOM05D001534 ORTHO05D003503 3.0e-12 75.5 125 45.6
PGSC0003DMG400022296 Solanum tuberosum HOM05D001534 ORTHO05D003503 3.0e-12 75.5 122 41.8
Thecc.01G187000 Theobroma cacao HOM05D001534 ORTHO05D003503 3.0e-12 75.5 113 42.5
AUR62017561 Chenopodium quinoa HOM05D001534 ORTHO05D003503 5.2e-12 74.7 115 41.7
VMungo1215G0288 Vigna mungo HOM05D001534 ORTHO05D017148 6.8e-12 74.3 112 38.4
Nitab4.5_0001160g0050 Nicotiana tabacum HOM05D001534 ORTHO05D003503 8.8e-12 73.9 120 38.3
AUR62015100 Chenopodium quinoa HOM05D001534 ORTHO05D003503 1.5e-11 73.2 115 39.1
arahy.Tifrunner.gnm1.ann1.9Y4IVD Arachis hypogaea HOM05D001534 ORTHO05D003503 3.4e-11 72.0 111 42.3
arahy.Tifrunner.gnm1.ann1.E4KFI0 Arachis hypogaea HOM05D001534 ORTHO05D003503 3.4e-11 72.0 111 42.3
Ca_14770_v3 Cicer arietinum L. HOM05D001534 ORTHO05D003503 7.5e-11 70.9 122 41.0
EL10Ac9g22782 Beta vulgaris HOM05D001534 ORTHO05D003503 9.8e-11 70.5 115 35.7
Psat3g179000 Pisum sativum HOM05D001534 ORTHO05D003503 9.8e-11 70.5 119 41.2
CAN.G337.48 Capsicum annuum HOM05D001534 ORTHO05D003503 1.7e-10 69.7 122 38.5
unitig_8.g3633 Utricularia gibba HOM05D001534 ORTHO05D003503 1.7e-10 69.7 122 43.4
Gohir.A07G085500 Gossypium hirsutum HOM05D001534 ORTHO05D003503 2.2e-10 69.3 117 42.7
Gohir.D07G090900 Gossypium hirsutum HOM05D001534 ORTHO05D003503 2.2e-10 69.3 117 42.7
Gorai.001G097400 Gossypium raimondii HOM05D001534 ORTHO05D003503 2.2e-10 69.3 117 42.7
Glyma.02G092400 Glycine max HOM05D001534 ORTHO05D003503 2.8e-10 68.9 117 43.6
Medtr3g055240 Medicago truncatula HOM05D001534 ORTHO05D003503 2.8e-10 68.9 109 44.0
FAN14G2718 Fragaria x ananassa HOM05D001534 ORTHO05D003503 3.7e-10 68.6 117 38.5
Lalb_Chr10g0091691 Lupinus albus HOM05D001534 ORTHO05D003503 3.7e-10 68.6 114 39.5
TPR.G18311 Trifolium pratense HOM05D026048 ORTHO05D026205 6.3e-10 67.8 119 42.0
FAN02G0816 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.1e-09 67.0 119 40.3
FAN05G0005 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.1e-09 67.0 119 40.3
Lj1g0005996 Lotus japonicus HOM05D001534 ORTHO05D003503 1.4e-09 66.6 115 38.3
MELO3C014358.2 Cucumis melo HOM05D001534 ORTHO05D003503 3.1e-09 65.5 98 44.9
Nitab4.5_0005874g0010 Nicotiana tabacum HOM05D001534 ORTHO05D003503 4.1e-09 65.1 114 37.7
Haze_12731 Corylus avellana HOM05D001534 ORTHO05D003503 5.4e-09 64.7 118 38.1
Psat5g175760 Pisum sativum HOM05D001534 ORTHO05D003503 7.0e-09 64.3 109 40.4
TPR.G32247 Trifolium pratense HOM05D001534 ORTHO05D003503 7.0e-09 64.3 109 42.2
ECA236G2991 Erigeron canadensis HOM05D001534 ORTHO05D003503 1.2e-08 63.5 112 35.7
TPR.G16185 Trifolium pratense HOM05D001534 ORTHO05D003503 1.2e-08 63.5 118 40.7
Ah.14g082990 Amaranthus hybridus HOM05D001534 ORTHO05D003503 7.7e-08 60.8 114 35.1
Migut.M01701 Erythranthe guttata HOM05D001534 ORTHO05D003503 1.3e-07 60.1 119 41.2
FAN09G2342 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.3e-07 60.1 117 36.8
Eucgr.K00716 Eucalyptus grandis HOM05D001534 ORTHO05D003503 1.7e-07 59.7 116 34.5
Sopen07g033250 Solanum pennellii HOM05D001534 ORTHO05D003503 1.7e-07 59.7 134 32.1
Solyc07g065040.3 Solanum lycopersicum HOM05D001534 ORTHO05D003503 2.9e-07 58.9 134 31.3
SGA_v2.0_scaffold171G38904 Striga asiatica HOM05D001534 ORTHO05D003503 8.6e-07 57.4 116 38.8
Medtr7g024860 Medicago truncatula HOM05D001534 ORTHO05D003503 1.5e-06 56.6 133 33.1
Medtr7g024867 Medicago truncatula HOM05D001534 ORTHO05D003503 1.5e-06 56.6 133 33.1
Sp1g03800 Schrenkiella parvula HOM05D001534 ORTHO05D003503 1.5e-06 56.6 121 36.4
HanXRQChr10g0306291 Helianthus annuus HOM05D001534 ORTHO05D003503 2.5e-06 55.8 120 34.2
A10p03380 Brassica napus HOM05D001534 ORTHO05D003503 3.3e-06 55.5 118 37.3
BraA10t42614Z Brassica rapa HOM05D001534 ORTHO05D003503 3.3e-06 55.5 118 37.3
CARHR004360 Cardamine hirsuta HOM05D001534 ORTHO05D003503 3.3e-06 55.5 65 47.7
ECA234G4726 Erigeron canadensis HOM05D001534 ORTHO05D003503 4.2e-06 55.1 73 41.1
HanXRQChr15g0492651 Helianthus annuus HOM05D001534 ORTHO05D003503 7.2e-06 54.3 113 37.2
SEGI_08294 Sequoiadendron giganteum HOM05D001534 ORTHO05D003503 7.2e-06 54.3 115 34.8


User provided reference genes

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