Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 3.4e-169 598.2 294 100.0
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 6.2e-94 348.2 273 66.7
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 4.6e-73 278.9 271 56.5
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.0e-68 263.5 264 51.9
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.9e-67 259.6 260 55.0
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 3.5e-65 252.7 286 50.0
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 3.9e-64 249.2 285 50.2
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.5e-63 247.3 287 48.4
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 5.6e-63 245.4 285 49.5
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 6.2e-62 241.9 247 54.7
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 5.8e-60 235.3 288 48.3
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 7.6e-60 235.0 281 47.7
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.7e-59 233.8 268 49.6
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 6.4e-59 231.9 290 48.3
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 8.4e-59 231.5 252 50.4
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.4e-58 230.7 233 58.4
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.4e-58 230.7 273 46.5
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.5e-57 226.1 262 49.2
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 3.5e-57 226.1 267 49.1
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.8e-56 223.8 225 56.0
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.1e-55 221.1 243 49.4
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 9.6e-55 218.0 263 45.6
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.1e-53 214.5 245 48.6
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.8e-53 213.8 255 45.9
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.5e-52 210.7 271 47.6
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 7.6e-52 208.4 250 46.4
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 7.1e-50 201.8 267 44.6
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.6e-49 200.7 192 53.6
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 6.0e-49 198.7 216 50.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.3e-48 197.6 174 53.4
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.8e-48 197.2 163 57.1
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.5e-47 194.1 217 46.5
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 4.3e-47 192.6 279 40.5
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.1e-46 190.3 287 39.4
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.1e-45 188.0 249 45.8
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.1e-45 188.0 247 44.9
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 3.1e-45 186.4 282 40.4
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.2e-44 184.5 244 44.7
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.2e-44 184.5 264 41.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.6e-44 183.3 243 45.3
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 1.3e-43 181.0 244 45.1
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 6.5e-43 178.7 212 45.8
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 6.5e-43 178.7 277 39.7
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 8.4e-43 178.3 242 45.0
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 8.4e-43 178.3 242 45.0
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.6e-41 174.1 259 42.9
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.6e-41 174.1 259 42.9
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 5.7e-39 165.6 268 38.8
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.6e-38 164.1 263 40.3
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 6.9e-37 158.7 268 40.7
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 9.0e-37 158.3 249 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 3.4e-36 156.4 324 34.3
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 6.1e-33 145.6 194 46.4
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.3e-32 144.4 190 47.9
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.7e-30 136.3 201 41.3
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 4.1e-29 132.9 203 40.4
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.4e-24 117.9 178 39.3
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 3.0e-24 116.7 115 50.4
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.1e-23 114.8 282 33.7
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 4.8e-22 109.4 157 37.6
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 2.4e-21 107.1 180 38.9
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 5.3e-21 105.9 150 37.3
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 9.1e-21 105.1 166 37.3
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.0e-20 104.0 155 36.1
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.6e-20 103.6 254 27.6
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.7e-20 102.1 167 36.5
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.2e-19 100.5 167 34.1
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.0e-19 99.4 175 33.7
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.9e-18 97.4 78 57.7
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.9e-18 97.4 78 57.7
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 3.2e-18 96.7 153 33.3
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 3.2e-18 96.7 159 32.7
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.2e-18 96.7 157 38.2
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 5.5e-18 95.9 153 33.3
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.2e-17 94.7 153 33.3
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.2e-17 94.7 166 34.3
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.6e-17 94.4 153 33.3
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.6e-17 93.2 148 33.1
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 6.1e-17 92.4 157 33.1
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 7.9e-17 92.0 153 34.6
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 1.0e-16 91.7 188 31.9
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 5.2e-16 89.4 153 34.6
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 5.2e-16 89.4 153 34.6
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 5.2e-16 89.4 199 32.7
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 8.8e-16 88.6 150 34.7
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 1.5e-15 87.8 153 34.0
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 2.6e-15 87.0 191 32.5
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 4.4e-15 86.3 167 34.1
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 5.7e-15 85.9 136 34.6
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 7.4e-15 85.5 151 33.8
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 9.7e-15 85.1 169 36.1
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.7e-14 84.3 155 31.6
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.2e-14 84.0 215 30.2
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.8e-14 83.6 151 33.8
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 2.8e-14 83.6 153 33.3
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 6.3e-14 82.4 150 33.3
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 1.8e-13 80.9 159 30.8
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.4e-13 80.5 147 31.3
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.2e-12 78.2 93 37.6
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 1.2e-12 78.2 158 32.9
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.6e-12 77.8 158 32.9
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 2.0e-12 77.4 154 33.8
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 3.5e-12 76.6 138 34.1
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 4.5e-12 76.3 169 28.4
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 4.5e-12 76.3 161 35.4
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 1.7e-11 74.3 156 30.1
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 5.0e-11 72.8 189 28.6
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 6.5e-11 72.4 158 29.7
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 1.9e-10 70.9 58 50.0
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 4.2e-10 69.7 114 39.5
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 5.5e-10 69.3 190 28.4
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 9.4e-10 68.6 207 26.6
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.2e-09 68.2 157 30.6
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 1.6e-09 67.8 167 30.5
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 3.6e-09 66.6 153 34.0
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 4.7e-09 66.2 155 29.0
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 4.7e-09 66.2 155 28.4
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 4.7e-09 66.2 200 29.5
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 4.7e-09 66.2 111 38.7
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.8e-08 64.3 185 25.4
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 3.0e-08 63.5 148 29.7
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 5.2e-08 62.8 107 40.2
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 6.7e-08 62.4 133 29.3
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 8.8e-08 62.0 107 35.5
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.5e-07 61.2 51 52.9
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 2.0e-07 60.8 185 28.6
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.0e-07 60.8 152 25.0
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 2.0e-07 60.8 124 36.3
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 2.0e-07 60.8 89 34.8
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 2.6e-07 60.5 124 36.3
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 3.3e-07 60.1 124 36.3
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 3.3e-07 60.1 92 39.1
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.3e-07 60.1 152 25.0
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 3.3e-07 60.1 112 37.5
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.4e-07 59.7 49 53.1
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 4.4e-07 59.7 121 37.2
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 5.7e-07 59.3 124 37.1
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 5.7e-07 59.3 49 46.9
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 9.7e-07 58.5 48 50.0
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.3e-06 58.2 109 36.7
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 1.7e-06 57.8 131 37.4
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 2.2e-06 57.4 123 34.1
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 2.2e-06 57.4 124 34.7
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 2.2e-06 57.4 57 47.4
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 2.2e-06 57.4 57 47.4
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 2.8e-06 57.0 129 35.7
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 2.8e-06 57.0 108 35.2
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 3.7e-06 56.6 129 35.7
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 3.7e-06 56.6 138 34.1
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 4.8e-06 56.2 129 34.1
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 6.3e-06 55.8 129 34.1
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.3e-06 55.8 58 41.4
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 6.3e-06 55.8 124 33.9
VMungo0331G0323 Vigna mungo HOM05D008573 ORTHO05D009911 6.3e-06 55.8 44 56.8
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 8.2e-06 55.5 102 34.3
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 8.2e-06 55.5 160 23.8
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 8.2e-06 55.5 131 32.1
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 8.2e-06 55.5 115 35.7
MBI07_g43314_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 8.2e-06 55.5 102 36.3
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 8.2e-06 55.5 122 37.7


User provided reference genes

Program Settings