Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.9e-53 212.2 105 100.0
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 5.9e-39 164.1 86 94.2
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 7.7e-39 163.7 86 93.0
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 3.8e-38 161.4 86 93.0
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 3.8e-38 161.4 86 91.9
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 5.0e-38 161.0 86 91.9
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 6.5e-38 160.6 86 91.9
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.1e-37 159.8 86 90.7
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.4e-37 159.5 86 90.7
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.4e-37 159.5 86 90.7
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.4e-37 159.5 86 89.5
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.4e-37 159.5 86 90.7
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.9e-37 159.1 86 88.4
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 2.5e-37 158.7 86 90.7
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 3.2e-37 158.3 86 89.5
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 5.5e-37 157.5 86 87.2
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 7.2e-37 157.1 86 88.4
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 7.2e-37 157.1 85 88.2
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 9.4e-37 156.8 86 89.5
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 9.4e-37 156.8 86 88.4
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.2e-36 156.4 87 87.4
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.2e-36 156.4 86 87.2
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 1.2e-36 156.4 86 87.2
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.6e-36 156.0 85 89.4
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 2.1e-36 155.6 86 88.4
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.1e-36 155.6 85 87.1
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.1e-36 155.6 85 87.1
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 2.1e-36 155.6 86 86.0
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.7e-36 155.2 86 88.4
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 6.1e-36 154.1 86 87.2
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 6.1e-36 154.1 90 84.4
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 7.9e-36 153.7 86 86.0
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 7.9e-36 153.7 84 88.1
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.0e-35 153.3 85 87.1
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 1.0e-35 153.3 86 84.9
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.8e-35 152.5 86 86.0
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.8e-35 152.5 87 87.4
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 2.3e-35 152.1 86 84.9
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 2.3e-35 152.1 86 84.9
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.3e-35 152.1 90 83.3
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 3.0e-35 151.8 85 84.7
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 3.0e-35 151.8 86 84.9
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 3.9e-35 151.4 85 89.4
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.9e-35 151.4 84 86.9
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 8.8e-35 150.2 78 92.3
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 8.8e-35 150.2 78 92.3
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.1e-34 149.8 90 82.2
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.1e-34 149.8 86 84.9
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.1e-34 149.8 90 82.2
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 1.5e-34 149.4 85 85.9
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.6e-34 148.7 86 83.7
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 2.6e-34 148.7 85 83.5
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 2.6e-34 148.7 80 90.0
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 3.3e-34 148.3 78 91.0
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 3.3e-34 148.3 86 83.7
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 4.4e-34 147.9 85 83.5
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 4.4e-34 147.9 80 88.8
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 7.4e-34 147.1 84 85.7
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 9.7e-34 146.7 86 80.2
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.7e-33 146.0 86 82.6
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 2.2e-33 145.6 75 93.3
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.8e-33 145.2 86 83.7
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 3.7e-33 144.8 86 80.2
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 6.3e-33 144.1 86 81.4
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 6.3e-33 144.1 86 81.4
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 6.3e-33 144.1 85 82.4
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 6.3e-33 144.1 75 92.0
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 1.1e-32 143.3 85 81.2
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.1e-32 143.3 79 92.4
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 1.4e-32 142.9 84 81.0
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.4e-32 142.9 77 89.6
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.4e-32 142.9 77 89.6
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 2.4e-32 142.1 86 79.1
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 2.4e-32 142.1 77 88.3
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 7.0e-32 140.6 96 76.0
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.2e-31 139.8 84 81.0
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.6e-31 139.4 75 90.7
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.6e-31 139.4 77 85.7
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.6e-31 138.7 112 66.1
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 2.6e-31 138.7 86 75.6
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 3.5e-31 138.3 88 79.5
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 3.5e-31 138.3 88 79.5
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 4.5e-31 137.9 79 86.1
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 4.5e-31 137.9 79 86.1
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 4.5e-31 137.9 80 83.8
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 4.5e-31 137.9 79 86.1
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 5.9e-31 137.5 75 89.3
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 5.9e-31 137.5 77 83.1
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 7.7e-31 137.1 98 71.4
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 3.8e-30 134.8 86 75.6
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.8e-30 134.8 84 82.1
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 5.0e-30 134.4 75 86.7
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 6.5e-30 134.0 74 87.8
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 1.9e-29 132.5 75 86.7
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.9e-29 132.5 85 74.1
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 2.5e-29 132.1 85 75.3
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 2.5e-29 132.1 85 75.3
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 3.2e-29 131.7 75 81.3
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 3.2e-29 131.7 85 75.3
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.6e-28 129.4 82 74.4
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.7e-28 128.6 75 82.7
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 4.7e-28 127.9 87 74.7
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 4.7e-28 127.9 69 89.9
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 4.7e-28 127.9 77 74.0
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.3e-27 125.6 77 76.6
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 1.1e-26 123.2 85 71.8
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 2.6e-26 122.1 67 82.1
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 5.7e-26 120.9 66 87.9
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 4.8e-25 117.9 75 74.7
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 1.8e-24 115.9 72 75.0
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 2.4e-24 115.5 74 75.7
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 7.7e-23 110.5 56 92.9
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 8.5e-22 107.1 62 80.6
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 8.5e-22 107.1 75 73.3
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.6e-20 101.7 89 62.9
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 8.8e-19 97.1 54 88.9
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.0e-18 95.9 80 63.8
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.0e-18 95.9 80 63.8
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 7.5e-18 94.0 86 59.3
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 3.7e-17 91.7 56 78.6
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 5.4e-16 87.8 56 71.4
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 2.0e-15 85.9 73 53.4
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 3.5e-15 85.1 78 53.8
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 2.9e-14 82.0 43 88.4
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 3.8e-14 81.6 81 55.6
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 4.2e-13 78.2 79 57.0
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.6e-10 68.9 36 86.1
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 3.4e-10 68.6 76 44.7
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.1e-08 62.0 37 78.4
CAN.G1080.4 Capsicum annuum HOM05D000052 ORTHO05D000963 5.0e-06 54.7 51 58.8


User provided reference genes

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