Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.5e-263 911.8 531 100.0
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 4.0e-253 877.9 531 96.8
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 1.0e-203 713.8 524 80.5
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 3.0e-184 649.0 529 68.1
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 2.9e-182 642.5 526 63.3
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 4.4e-175 618.6 524 61.5
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.1e-173 614.0 538 62.1
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.6e-172 610.1 538 62.1
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 4.6e-172 608.6 530 69.1
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 3.9e-171 605.5 530 60.0
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 6.6e-171 604.7 529 61.8
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 2.5e-170 602.8 551 66.8
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 4.3e-170 602.1 530 60.4
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 1.6e-169 600.1 524 61.6
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.7e-169 598.6 538 61.5
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.3e-168 596.3 526 61.0
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 3.1e-168 595.9 528 59.1
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 3.4e-167 592.4 532 67.9
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 4.4e-167 592.0 533 66.6
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 5.8e-167 591.7 532 68.6
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 7.5e-167 591.3 522 66.9
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 7.5e-167 591.3 525 59.0
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.7e-166 589.0 526 58.4
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 1.1e-165 587.4 550 59.1
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 2.4e-165 586.3 534 58.1
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 5.4e-165 585.1 495 70.3
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.6e-164 583.6 521 66.4
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 3.5e-164 582.4 532 57.5
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 6.0e-164 581.6 532 57.3
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 7.8e-164 581.3 524 66.6
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 3.0e-163 579.3 525 66.7
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 3.9e-163 578.9 525 66.7
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 3.9e-163 578.9 528 61.0
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 5.1e-163 578.6 526 60.8
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 6.6e-163 578.2 550 57.8
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 8.6e-163 577.8 526 65.8
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.9e-162 576.6 529 56.5
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 2.5e-162 576.2 526 65.6
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 2.5e-162 576.2 526 65.6
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 3.3e-162 575.9 521 65.8
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 3.3e-162 575.9 530 67.9
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 4.3e-162 575.5 527 65.7
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 5.6e-162 575.1 530 67.7
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.2e-161 573.9 533 66.0
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.2e-161 573.9 521 66.0
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 1.2e-161 573.9 545 65.1
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.6e-161 573.5 533 66.4
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 3.6e-161 572.4 526 58.6
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 4.7e-161 572.0 529 57.1
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 6.2e-161 571.6 530 56.6
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 8.1e-161 571.2 532 57.0
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 3.1e-160 569.3 545 56.7
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 6.8e-160 568.2 527 65.1
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.5e-159 567.0 536 66.0
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 4.4e-159 565.5 532 64.1
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 4.4e-159 565.5 532 64.1
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 1.3e-158 563.9 532 65.2
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 8.4e-158 561.2 547 64.0
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 1.9e-157 560.1 547 63.6
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 7.1e-157 558.1 533 63.8
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.2e-156 557.4 547 63.4
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.5e-156 555.8 520 56.2
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 3.5e-156 555.8 520 56.2
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 4.6e-156 555.4 529 55.4
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.9e-155 552.4 520 55.6
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 3.9e-155 552.4 532 62.8
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.9e-154 550.1 547 63.8
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.9e-154 550.1 485 58.6
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 2.5e-154 549.7 524 55.2
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 2.5e-154 549.7 524 55.2
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 6.2e-153 545.0 532 56.2
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 8.1e-153 544.7 531 55.4
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 1.4e-152 543.9 528 55.3
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.8e-152 543.5 525 65.1
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 8.9e-152 541.2 532 53.6
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 9.9e-151 537.7 527 54.8
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.4e-149 533.9 535 54.2
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 7.1e-149 531.6 538 53.7
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 2.1e-148 530.0 538 53.7
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.5e-146 523.9 528 52.8
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 4.3e-146 522.3 521 61.6
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.6e-143 513.1 538 52.8
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 7.6e-143 511.5 525 56.4
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 5.4e-141 505.4 530 50.8
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.6e-140 503.8 533 50.7
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 8.7e-139 498.0 535 49.3
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 7.4e-138 495.0 529 49.9
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 4.0e-136 489.2 527 62.2
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 7.6e-135 485.0 531 52.4
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 1.7e-134 483.8 531 49.2
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.2e-134 483.4 533 49.9
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 4.9e-134 482.3 529 49.7
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 3.2e-133 479.6 506 58.7
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 3.5e-132 476.1 526 58.9
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 1.5e-130 470.7 531 48.6
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 1.6e-129 467.2 522 50.4
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 6.2e-129 465.3 531 48.0
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 1.1e-128 464.5 541 49.4
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.8e-128 463.8 530 48.1
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 2.0e-127 460.3 531 48.8
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 3.4e-127 459.5 532 48.7
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 1.0e-126 458.0 521 50.3
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 7.9e-124 448.4 548 55.8
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 9.0e-120 434.9 329 65.3
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 1.4e-107 394.4 542 43.2
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.4e-107 394.4 546 43.8
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 3.9e-107 392.9 527 44.0
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.5e-103 380.9 388 66.5
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 1.6e-95 354.4 520 49.4
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 1.7e-89 334.3 527 47.8
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 9.1e-80 302.0 523 39.8
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 1.7e-78 297.7 525 47.8
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.1e-76 290.8 278 52.9
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 4.5e-71 273.1 510 35.3
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 3.8e-70 270.0 257 52.5
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 7.5e-66 255.8 328 46.0
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.3e-62 244.2 311 45.7
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 2.0e-58 231.1 522 29.7
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 4.4e-50 203.4 423 32.4
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 6.4e-41 172.9 226 46.0
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.5e-37 161.0 311 33.8
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 2.0e-34 151.4 97 69.1
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.1e-31 141.4 222 41.9
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.8e-27 128.3 102 64.7
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 1.2e-26 125.6 178 41.6
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 1.7e-25 121.7 106 59.4
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 5.4e-24 116.7 119 54.6
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.1e-23 114.8 508 25.8
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 1.2e-18 99.0 157 43.3
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 9.9e-18 95.9 136 39.7
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 1.4e-16 92.0 157 40.8
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.4e-16 91.3 50 90.0
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 2.7e-15 87.8 70 65.7
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 1.8e-11 75.1 102 39.2
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 9.0e-11 72.8 101 39.6
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 3.4e-10 70.9 85 42.4
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 1.7e-09 68.6 71 47.9
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.1e-08 65.9 70 48.6
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 1.4e-08 65.5 83 47.0


User provided reference genes

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