Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24689 Nelumbo nucifera HOM05D001156 ORTHO05D001006 3.8e-60 234.6 113 100.0
Nn4g22755 Nelumbo nucifera HOM05D001156 ORTHO05D001006 1.5e-48 196.1 108 88.0
TAR622G0652 Trochodendron aralioides HOM05D001156 ORTHO05D001006 1.5e-43 179.5 112 78.6
MD06G1173500 Malus domestica HOM05D001156 ORTHO05D001006 7.2e-43 177.2 109 76.1
Dinv20649 Davidia involucrata HOM05D001156 ORTHO05D001006 2.7e-42 175.3 109 78.0
Hma1.2p1_0701F.1_g205880 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 3.6e-42 174.9 109 76.1
Hma1.2p1_2409F.1_g321500 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 3.6e-42 174.9 109 76.1
Lju470C11T7 Lonicera japonica HOM05D001156 ORTHO05D001006 8.0e-42 173.7 107 74.8
Dinv02539 Davidia involucrata HOM05D002723 ORTHO05D003240 1.4e-41 172.9 109 78.9
QL10p015865 Quercus lobata HOM05D001156 ORTHO05D001006 2.3e-41 172.2 109 76.1
MD14G1180000 Malus domestica HOM05D001156 ORTHO05D001006 8.8e-41 170.2 109 72.5
CSS0016934 Camellia sinensis var. sinensis HOM05D001156 ORTHO05D001006 2.0e-40 169.1 109 73.4
TWI14G1176 Tripterygium wilfordii HOM05D001156 ORTHO05D001006 2.0e-40 169.1 109 75.2
Manes.06G105200 Manihot esculenta HOM05D001156 ORTHO05D001006 3.4e-40 168.3 108 73.1
Haze_07504 Corylus avellana HOM05D001156 ORTHO05D001006 5.7e-40 167.5 109 72.5
Prupe.5G173000 Prunus persica HOM05D001156 ORTHO05D001006 5.7e-40 167.5 109 74.3
Duzib205G0148 Durio zibethinus HOM05D001156 ORTHO05D001006 9.8e-40 166.8 109 73.4
Cpa.g.sc286.9 Carica papaya HOM05D001156 ORTHO05D001006 1.3e-39 166.4 109 69.7
Hma1.2p1_0176F.1_g077370 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 2.2e-39 165.6 108 71.3
Rhsim08G0172800 Rhododendron simsii HOM05D001156 ORTHO05D001006 2.2e-39 165.6 109 73.4
TAR371G0150 Trochodendron aralioides HOM05D001156 ORTHO05D001006 4.8e-39 164.5 109 75.2
Actinidia19323 Actinidia chinensis HOM05D001156 ORTHO05D000024 7.0e-38 160.6 109 72.5
TWI39G0852 Tripterygium wilfordii HOM05D001156 ORTHO05D001006 7.0e-38 160.6 109 73.4
Thecc.03G013100 Theobroma cacao HOM05D001156 ORTHO05D001006 2.0e-37 159.1 109 69.7
Atru.chr9.2482 Acer truncatum HOM05D001156 ORTHO05D001006 3.5e-37 158.3 108 69.4
Potri.015G077200 Populus trichocarpa HOM05D001156 ORTHO05D001006 7.7e-37 157.1 111 69.4
Cfa019137 Carpinus fangiana HOM05D001156 ORTHO05D001006 1.0e-36 156.8 109 68.8
Cc00_g05000 Coffea canephora HOM05D001156 ORTHO05D001006 1.0e-36 156.8 109 68.8
Eucgr.D02092 Eucalyptus grandis HOM05D001156 ORTHO05D001006 1.3e-36 156.4 109 72.5
Gohir.D12G275000 Gossypium hirsutum HOM05D001156 ORTHO05D001006 1.3e-36 156.4 109 69.7
HanXRQChr05g0156251 Helianthus annuus HOM05D001156 ORTHO05D001006 1.3e-36 156.4 109 70.6
CiPaw.11G025700 Carya illinoinensis HOM05D001156 ORTHO05D001006 1.7e-36 156.0 109 67.0
Gohir.A12G274300 Gossypium hirsutum HOM05D001156 ORTHO05D001006 1.7e-36 156.0 109 69.7
Gorai.008G295500 Gossypium raimondii HOM05D001156 ORTHO05D001006 1.7e-36 156.0 109 69.7
Sabra15G0101900 Salix brachista HOM05D001156 ORTHO05D001006 2.9e-36 155.2 111 69.4
Nitab4.5_0001875g0090 Nicotiana tabacum HOM05D001156 ORTHO05D001006 6.5e-36 154.1 108 69.4
Cc00_g05020 Coffea canephora HOM05D001156 ORTHO05D001006 8.5e-36 153.7 108 66.7
ECA246G0236 Erigeron canadensis HOM05D001156 ORTHO05D001006 1.1e-35 153.3 109 69.7
Lsat_1_v5_gn_5_14700 Lactuca sativa HOM05D001156 ORTHO05D001006 1.1e-35 153.3 108 69.4
Peaxi162Scf00047g02451 Petunia axillaris HOM05D003092 ORTHO05D003977 1.1e-35 153.3 107 69.2
Ciclev10012849m.g Citrus clementina HOM05D001156 ORTHO05D001006 1.5e-35 152.9 109 68.8
vmacro19392 Vaccinium macrocarpon HOM05D001156 ORTHO05D001006 1.5e-35 152.9 109 70.6
Cc11_g12810 Coffea canephora HOM05D001156 ORTHO05D001006 1.9e-35 152.5 109 67.0
Peaxi162Scf00047g02423 Petunia axillaris HOM05D001156 ORTHO05D001006 3.2e-35 151.8 107 69.2
THA.LOC104822304 Tarenaya hassleriana HOM05D001156 ORTHO05D001006 5.5e-35 151.0 111 64.9
FvH4_5g05340 Fragaria vesca HOM05D001156 ORTHO05D001006 2.1e-34 149.1 109 67.9
DCAR_026138 Daucus carota HOM05D001156 ORTHO05D001006 2.8e-34 148.7 109 66.1
PGR102G0269 Punica granatum HOM05D001156 ORTHO05D001006 2.8e-34 148.7 109 67.0
MELO3C003920.2 Cucumis melo HOM05D001156 ORTHO05D001006 3.6e-34 148.3 108 65.7
ClCG06G015740 Citrullus lanatus HOM05D001156 ORTHO05D001006 4.7e-34 147.9 107 65.4
RcHm_v2.0_Chr7g0193501 Rosa chinensis HOM05D001156 ORTHO05D001006 4.7e-34 147.9 109 66.1
Aqoxy6G01858 Aquilegia oxysepala HOM05D001156 ORTHO05D001006 8.0e-34 147.1 108 68.5
FAN13G2117 Fragaria x ananassa HOM05D001156 ORTHO05D001006 8.0e-34 147.1 109 67.9
Solyc09g010030.3 Solanum lycopersicum HOM05D001156 ORTHO05D001006 8.0e-34 147.1 108 66.7
FAN04G1980 Fragaria x ananassa HOM05D001156 ORTHO05D001006 1.0e-33 146.7 109 67.0
Aqoxy2G02136 Aquilegia oxysepala HOM05D001156 ORTHO05D001006 1.4e-33 146.4 109 68.8
FAN08G0627 Fragaria x ananassa HOM05D001156 ORTHO05D001006 1.8e-33 146.0 109 67.0
FAN18G2375 Fragaria x ananassa HOM05D001156 ORTHO05D001006 1.8e-33 146.0 109 67.0
Sopen09g004770 Solanum pennellii HOM05D001156 ORTHO05D001006 1.8e-33 146.0 108 65.7
Nitab4.5_0005023g0040 Nicotiana tabacum HOM05D001156 ORTHO05D001006 2.3e-33 145.6 108 64.8
PGSC0003DMG400008867 Solanum tuberosum HOM05D001156 ORTHO05D001006 2.3e-33 145.6 108 65.7
MSTRG.17770 Avicennia marina HOM05D001156 ORTHO05D001006 3.0e-33 145.2 105 65.7
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 3.0e-33 145.2 110 66.4
Nitab4.5_0002015g0010 Nicotiana tabacum HOM05D001156 ORTHO05D001006 3.0e-33 145.2 108 65.7
Sed0004231 Sechium edule HOM05D001156 ORTHO05D001006 1.5e-32 142.9 108 63.0
COL.COLO4_30043 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.6e-32 142.1 96 68.8
CsaV3_3G028630 Cucumis sativus L. HOM05D001156 ORTHO05D001006 3.4e-32 141.7 108 62.0
HanXRQChr07g0196421 Helianthus annuus HOM05D001156 ORTHO05D001006 3.4e-32 141.7 110 66.4
MBI10_g06740_MAGBIO Magnolia biondii HOM05D001156 ORTHO05D001006 5.7e-32 141.0 112 66.1
CANSAT80G0830 Cannabis sativa HOM05D001156 ORTHO05D001006 9.8e-32 140.2 109 63.3
Cc00_g05010 Coffea canephora HOM05D001156 ORTHO05D001006 2.2e-31 139.0 109 62.4
Oeu018233.1 Olea europaea HOM05D001156 ORTHO05D001006 4.9e-31 137.9 105 62.9
SalBow6G0603 Salvia bowleyana HOM05D001156 ORTHO05D001006 1.1e-30 136.7 105 62.9
Migut.N01934 Erythranthe guttata HOM05D001156 ORTHO05D001006 1.2e-29 133.3 108 61.1
CAN.G397.75 Capsicum annuum HOM05D001156 ORTHO05D001006 1.6e-29 132.9 100 64.0
PSO675G7370 Papaver somniferum HOM05D001156 ORTHO05D001006 3.5e-29 131.7 109 63.3
COL.COLO4_30231 Corchorus olitorius HOM05D001156 ORTHO05D001006 5.9e-29 131.0 96 67.7
PSO339G3237 Papaver somniferum HOM05D001156 ORTHO05D001006 7.8e-29 130.6 109 63.3
PSO384G4181 Papaver somniferum HOM05D001156 ORTHO05D001006 1.0e-28 130.2 109 63.3
Lj5E124G2 Lonicera japonica HOM05D001156 ORTHO05D001006 1.7e-28 129.4 83 72.3
THA.LOC104802756 Tarenaya hassleriana HOM05D001156 ORTHO05D001006 1.7e-28 129.4 105 61.0
PSO541G0845 Papaver somniferum HOM05D001156 ORTHO05D001006 2.3e-28 129.0 109 62.4
Rhsim08G0172700 Rhododendron simsii HOM05D001156 ORTHO05D000024 2.3e-28 129.0 96 67.7
Manes.14G065500 Manihot esculenta HOM05D001156 ORTHO05D001006 1.1e-27 126.7 78 75.6
SGA_v2.0_scaffold62G21596 Striga asiatica HOM05D001156 ORTHO05D001006 1.1e-27 126.7 105 58.1
Aa31LG5G16530 Aethionema arabicum HOM05D001156 ORTHO05D001006 1.5e-27 126.3 105 58.1
Lalb_Chr18g0058261 Lupinus albus HOM05D001156 ORTHO05D001006 1.5e-27 126.3 105 61.0
unitig_26.g10136 Utricularia gibba HOM05D001156 ORTHO05D001006 4.3e-27 124.8 82 68.3
MELO3C034168.2 Cucumis melo HOM05D001156 ORTHO05D001006 9.5e-27 123.6 93 66.7
GSVIVG01007737001 Vitis vinifera HOM05D001156 ORTHO05D001006 8.0e-26 120.6 82 69.5
HPP92_008592 Vanilla planifolia HOM05D001156 ORTHO05D001006 1.4e-25 119.8 107 56.1
Sp3g04990 Schrenkiella parvula HOM05D001156 ORTHO05D001006 1.8e-25 119.4 105 57.1
ECA247G0150 Erigeron canadensis HOM05D001156 ORTHO05D001006 3.0e-25 118.6 100 63.0
Thhalv10021590m.g Eutrema salsugineum HOM05D001156 ORTHO05D001006 6.8e-25 117.5 105 56.2
Glyma.09G029000 Glycine max HOM05D001156 ORTHO05D001006 6.8e-25 117.5 108 54.6
Sc12g0005310 Simmondsia chinensis HOM05D001156 ORTHO05D001006 1.5e-24 116.3 112 54.5
TPR.G8034 Trifolium pratense HOM05D001156 ORTHO05D001006 4.4e-24 114.8 105 57.1
C05p61210 Brassica napus HOM05D001156 ORTHO05D001006 5.7e-24 114.4 101 57.4
BolC5t34781H Brassica oleracea HOM05D001156 ORTHO05D001006 5.7e-24 114.4 101 57.4
BraA05t22918Z Brassica rapa HOM05D001156 ORTHO05D001006 5.7e-24 114.4 104 55.8
Carub.0003s0547 Capsella rubella HOM05D001156 ORTHO05D001006 5.7e-24 114.4 105 55.2
Phvul.006G124100 Phaseolus vulgaris HOM05D001156 ORTHO05D001006 5.7e-24 114.4 90 61.1
BcaC05g30063 Brassica carinata HOM05D001156 ORTHO05D001006 7.5e-24 114.0 101 56.4
Glyma.15G134800 Glycine max HOM05D001156 ORTHO05D001006 7.5e-24 114.0 88 61.4
Ca_00920_v3 Cicer arietinum L. HOM05D001156 ORTHO05D001006 9.8e-24 113.6 108 55.6
Psat1g164640 Pisum sativum HOM05D001156 ORTHO05D001006 9.8e-24 113.6 108 54.6
VMungo0540G0215 Vigna mungo HOM05D001156 ORTHO05D001006 9.8e-24 113.6 90 60.0
A05p41960 Brassica napus HOM05D001156 ORTHO05D001006 1.3e-23 113.2 104 54.8
Medtr2g031760 Medicago truncatula HOM05D001156 ORTHO05D001006 6.4e-23 110.9 105 57.1
AT3G06040 Arabidopsis thaliana HOM05D001156 ORTHO05D001006 1.8e-22 109.4 106 52.8
Lj6g0014938 Lotus japonicus HOM05D001156 ORTHO05D001006 2.4e-22 109.0 92 60.9
AL3G16880 Arabidopsis lyrata HOM05D001156 ORTHO05D001006 1.2e-21 106.7 106 51.9
arahy.Tifrunner.gnm1.ann1.7WX4FN Arachis hypogaea HOM05D001156 ORTHO05D001006 4.6e-21 104.8 85 62.4
CARHR080540 Cardamine hirsuta HOM05D001156 ORTHO05D001006 2.5e-19 99.0 105 50.5
Cpa.g.sc153.25 Carica papaya HOM05D001156 ORTHO05D001006 4.3e-19 98.2 60 70.0
Gorai.011G186400 Gossypium raimondii HOM05D001156 ORTHO05D001006 2.8e-18 95.5 71 62.0
Gohir.D10G167100 Gossypium hirsutum HOM05D001156 ORTHO05D001006 3.6e-18 95.1 71 62.0
ATR0068G065 Amborella trichopoda HOM05D001156 ORTHO05D001006 6.2e-18 94.4 65 61.5
EL10Ac5g10741 Beta vulgaris HOM05D001156 ORTHO05D001006 6.2e-18 94.4 105 45.7
AUR62030957 Chenopodium quinoa HOM05D001156 ORTHO05D001006 6.2e-18 94.4 105 47.6
Ah.02g110810 Amaranthus hybridus HOM05D001156 ORTHO05D001006 2.3e-17 92.4 104 46.2
SHI16975 Sapria himalayana HOM05D001156 ORTHO05D001006 1.5e-16 89.7 87 51.7
ATR0752G124 Amborella trichopoda HOM05D001156 ORTHO05D001006 2.0e-16 89.4 65 58.5
AUR62008204 Chenopodium quinoa HOM05D001156 ORTHO05D001006 2.6e-16 89.0 67 58.2
BolC3t16477H Brassica oleracea HOM05D001156 ORTHO05D043196 1.9e-14 82.8 99 47.5
Zm00001eb205850 Zea mays HOM05D001156 ORTHO05D001006 1.9e-14 82.8 64 56.2
Os02g0198900 Oryza sativa ssp. japonica HOM05D001156 ORTHO05D001006 4.1e-14 81.6 68 57.4
Zm00001eb235930 Zea mays HOM05D001156 ORTHO05D001006 4.6e-13 78.2 68 55.9
SEGI_23469 Sequoiadendron giganteum HOM05D001156 ORTHO05D001006 4.3e-11 71.6 59 52.5
A03p34480 Brassica napus HOM05D001156 ORTHO05D001006 1.2e-10 70.1 80 50.0
CDE05G0428 Ceratophyllum demersum HOM05D001156 ORTHO05D001006 1.5e-08 63.2 37 78.4
BraA03t12625Z Brassica rapa HOM05D001156 ORTHO05D043196 2.9e-07 58.9 66 48.5
Nitab4.5_0000073g0570 Nicotiana tabacum HOM05D001156 ORTHO05D001006 1.1e-06 57.0 52 57.7


User provided reference genes

Program Settings