Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001156', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '534', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p34480' => 'bna', 'A03p64230' => 'bna', 'A03p65440' => 'bna', 'A05p41960' => 'bna', 'A07p31190' => 'bna', 'A08p22720' => 'bna', 'Aa31LG4G10710' => 'aar', 'Aa31LG5G16530' => 'aar', 'Aa31LG6G13220' => 'aar', 'Aa31LG6G14560' => 'aar', 'Actinidia19220' => 'ach', 'Actinidia19323' => 'ach', 'Actinidia22420' => 'ach', 'Ah.02g110810' => 'amhyb', 'Ah.05g178980' => 'amhyb', 'Ah.15g094680' => 'amhyb', 'AL2G29480' => 'aly', 'AL3G16880' => 'aly', 'AL4G22630' => 'aly', 'AL5G12780' => 'aly', 'AL7G13110' => 'aly', 'AL7G14670' => 'aly', 'Aqoxy2G02136' => 'aox', 'Aqoxy3G04261' => 'aox', 'Aqoxy5G00599' => 'aox', 'Aqoxy6G01200' => 'aox', 'Aqoxy6G01412' => 'aox', 'Aqoxy6G01858' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5TMB2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F3RDV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U7G1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WX4FN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0ANZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVE24N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE3SS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQ0X0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF3IUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YYYQ5L' => 'arhy', 'AT1G70190' => 'ath', 'AT2G03130' => 'ath', 'AT3G06040' => 'ath', 'AT4G36420' => 'ath', 'AT4G37660' => 'ath', 'ATR0068G065' => 'atr', 'ATR0564G309' => 'atr', 'ATR0629G117' => 'atr', 'ATR0665G652' => 'atr', 'ATR0705G215' => 'atr', 'ATR0739G108' => 'atr', 'ATR0739G148' => 'atr', 'ATR0749G086' => 'atr', 'ATR0752G124' => 'atr', 'Atru.chr10.430' => 'acertr', 'Atru.chr3.1019' => 'acertr', 'Atru.chr3.2886' => 'acertr', 'Atru.chr3.729' => 'acertr', 'Atru.chr9.2482' => 'acertr', 'AUR62001367' => 'cqu', 'AUR62004556' => 'cqu', 'AUR62008204' => 'cqu', 'AUR62015145' => 'cqu', 'AUR62017607' => 'cqu', 'AUR62022672' => 'cqu', 'AUR62025583' => 'cqu', 'AUR62030957' => 'cqu', 'AUR62033575' => 'cqu', 'BcaB03g12335' => 'bca', 'BcaB03g15533' => 'bca', 'BcaB04g19220' => 'bca', 'BcaC01g00394' => 'bca', 'BcaC01g04321' => 'bca', 'BcaC05g30063' => 'bca', 'BcaC05g30064' => 'bca', 'BcaC08g45837' => 'bca', 'BcaNung02072' => 'bca', 'BcaNung02075' => 'bca', 'BcaNung02077' => 'bca', 'BolC1t00148H' => 'bol', 'BolC3t16477H' => 'bol', 'BolC3t20167H' => 'bol', 'BolC5t34781H' => 'bol', 'BolC6t38745H' => 'bol', 'BolC7t46594H' => 'bol', 'BolC7t46669H' => 'bol', 'BraA03t12625Z' => 'bra', 'BraA03t15494Z' => 'bra', 'BraA03t15596Z' => 'bra', 'BraA05t22918Z' => 'bra', 'BraA07t30752Z' => 'bra', 'BraA08t34241Z' => 'bra', 'C01p01510' => 'bna', 'C03p41940' => 'bna', 'C05p61210' => 'bna', 'C06p36240' => 'bna', 'C07p61690' => 'bna', 'C07p62540' => 'bna', 'CAN.G1075.42' => 'can', 'CAN.G1492.7' => 'can', 'CAN.G206.220' => 'can', 'CAN.G397.75' => 'can', 'CAN.G439.33' => 'can', 'CAN.G678.14' => 'can', 'CANSAT01G1841' => 'cansat', 'CANSAT01G3018' => 'cansat', 'CANSAT80G0830' => 'cansat', 'CANSAT80G1509' => 'cansat', 'CARHR063310' => 'chi', 'CARHR080540' => 'chi', 'CARHR244750' => 'chi', 'CARHR246050' => 'chi', 'Carub.0002s1688' => 'cru', 'Carub.0003s0547' => 'cru', 'Carub.0005s0196' => 'cru', 'Carub.0007s0261' => 'cru', 'Carub.0007s0389' => 'cru', 'Ca_00920_v3' => 'car', 'Ca_00925_v3' => 'car', 'Ca_03176_v3' => 'car', 'Ca_07501_v3' => 'car', 'Ca_11268_v3' => 'car', 'CBR_g2871' => 'cbr', 'Cc00_g05000' => 'ccan', 'Cc00_g05010' => 'ccan', 'Cc00_g05020' => 'ccan', 'Cc07_g10100' => 'ccan', 'Cc09_g05760' => 'ccan', 'Cc11_g12810' => 'ccan', 'CDE02G1704' => 'cde', 'CDE05G0428' => 'cde', 'Cfa000678' => 'cfa', 'Cfa004136' => 'cfa', 'Cfa019137' => 'cfa', 'Ciclev10012849m.g' => 'ccl', 'Ciclev10016633m.g' => 'ccl', 'Ciclev10026576m.g' => 'ccl', 'Ciclev10026634m.g' => 'ccl', 'CiPaw.01G004300' => 'cil', 'CiPaw.07G053000' => 'cil', 'CiPaw.09G074700' => 'cil', 'CiPaw.10G062700' => 'cil', 'CiPaw.11G025700' => 'cil', 'ClCG01G017620' => 'cla', 'ClCG01G019960' => 'cla', 'ClCG03G004220' => 'cla', 'ClCG06G015740' => 'cla', 'ClCG07G016250' => 'cla', 'COL.COLO4_11582' => 'col', 'COL.COLO4_17636' => 'col', 'COL.COLO4_22000' => 'col', 'COL.COLO4_30043' => 'col', 'COL.COLO4_30227' => 'col', 'COL.COLO4_30231' => 'col', 'Cpa.g.c45949' => 'cpa', 'Cpa.g.sc153.25' => 'cpa', 'Cpa.g.sc286.9' => 'cpa', 'Cpa.g.sc33.37' => 'cpa', 'Cpa.g.sc6.11' => 'cpa', 'Cpa.g.sc6.182' => 'cpa', 'Cre06.g293700' => 'cre', 'CsaV3_1G010160' => 'csa', 'CsaV3_3G028630' => 'csa', 'CsaV3_6G044160' => 'csa', 'CsaV3_6G046720' => 'csa', 'CSS0002792' => 'camsi', 'CSS0013566' => 'camsi', 'CSS0016934' => 'camsi', 'CSS0023118' => 'camsi', 'CSS0047861' => 'camsi', 'DCAR_000070' => 'dca', 'DCAR_001292' => 'dca', 'DCAR_004338' => 'dca', 'DCAR_024217' => 'dca', 'DCAR_025801' => 'dca', 'DCAR_025975' => 'dca', 'DCAR_026138' => 'dca', 'DCAR_030083' => 'dca', 'Dinv04043' => 'din', 'Dinv13838' => 'din', 'Dinv17478' => 'din', 'Dinv20649' => 'din', 'Dinv26936' => 'din', 'Dinv40032' => 'din', 'Duzib132G0565' => 'dzi', 'Duzib147G0140' => 'dzi', 'Duzib147G0485' => 'dzi', 'Duzib187G1810' => 'dzi', 'Duzib205G0148' => 'dzi', 'Duzib248G0830' => 'dzi', 'Duzib264G0887' => 'dzi', 'Duzib264G0950' => 'dzi', 'ECA232G2449' => 'eca', 'ECA234G3166' => 'eca', 'ECA238G1178' => 'eca', 'ECA246G0236' => 'eca', 'ECA247G0150' => 'eca', 'EL10Ac1g00191' => 'bvu', 'EL10Ac3g06332' => 'bvu', 'EL10Ac5g10741' => 'bvu', 'EL10Ac9g22855' => 'bvu', 'Eucgr.D02092' => 'egr', 'Eucgr.E04306' => 'egr', 'Eucgr.H02311' => 'egr', 'FAN04G0454' => 'fan', 'FAN04G1980' => 'fan', 'FAN08G0627' => 'fan', 'FAN08G3317' => 'fan', 'FAN11G3550' => 'fan', 'FAN13G2117' => 'fan', 'FAN13G3194' => 'fan', 'FAN15G1597' => 'fan', 'FAN16G2237' => 'fan', 'FAN18G0573' => 'fan', 'FAN18G0963' => 'fan', 'FAN18G2375' => 'fan', 'FAN19G0589' => 'fan', 'FAN19G1670' => 'fan', 'FAN20G0933' => 'fan', 'FAN21G1329' => 'fan', 'FAN23G1548' => 'fan', 'FAN24G2926' => 'fan', 'FAN24G2997' => 'fan', 'FAN25G1424' => 'fan', 'FAN26G1210' => 'fan', 'FAN28G0357' => 'fan', 'FAN28G1657' => 'fan', 'FAN28G2681' => 'fan', 'FvH4_1g12480' => 'fve', 'FvH4_2g11030' => 'fve', 'FvH4_3g12640' => 'fve', 'FvH4_5g04711' => 'fve', 'FvH4_5g05340' => 'fve', 'FvH4_5g26350' => 'fve', 'Glyma.02G052600' => 'gma', 'Glyma.08G164000' => 'gma', 'Glyma.09G029000' => 'gma', 'Glyma.13G077100' => 'gma', 'Glyma.15G134800' => 'gma', 'Glyma.15G263200' => 'gma', 'Glyma.20G052800' => 'gma', 'Gohir.A03G217800' => 'ghi', 'Gohir.A10G089600' => 'ghi', 'Gohir.A11G181200' => 'ghi', 'Gohir.A12G274300' => 'ghi', 'Gohir.D02G239800' => 'ghi', 'Gohir.D10G098500' => 'ghi', 'Gohir.D10G167100' => 'ghi', 'Gohir.D11G187700' => 'ghi', 'Gohir.D12G275000' => 'ghi', 'Gorai.005G268200' => 'gra', 'Gorai.007G199600' => 'gra', 'Gorai.008G295500' => 'gra', 'Gorai.011G108200' => 'gra', 'Gorai.011G186400' => 'gra', 'GSVIVG01007737001' => 'vvi', 'GSVIVG01012121001' => 'vvi', 'HanXRQChr05g0156251' => 'han', 'HanXRQChr07g0190371' => 'han', 'HanXRQChr07g0196421' => 'han', 'HanXRQChr08g0231921' => 'han', 'HanXRQChr12g0355891' => 'han', 'HanXRQChr14g0445281' => 'han', 'HanXRQChr16g0522361' => 'han', 'Haze_03841' => 'cav', 'Haze_06140' => 'cav', 'Haze_07504' => 'cav', 'Haze_15278' => 'cav', 'Haze_26791' => 'cav', 'Hma1.2p1_0176F.1_g077370' => 'hma', 'Hma1.2p1_0327F.1_g126500' => 'hma', 'Hma1.2p1_0701F.1_g205880' => 'hma', 'Hma1.2p1_0852F.1_g228590' => 'hma', 'Hma1.2p1_0913F.1_g235980' => 'hma', 'Hma1.2p1_2409F.1_g321500' => 'hma', 'HPP92_008592' => 'vpl', 'HPP92_021567' => 'vpl', 'HPP92_027134' => 'vpl', 'HPP92_027258' => 'vpl', 'Hund08877' => 'sun', 'Lalb_Chr01g0015551' => 'lal', 'Lalb_Chr09g0333401' => 'lal', 'Lalb_Chr16g0391001' => 'lal', 'Lalb_Chr18g0058261' => 'lal', 'Lalb_Chr18g0058311' => 'lal', 'Lalb_Chr25g0284381' => 'lal', 'Lj1P1147T19' => 'lonja', 'Lj3g0004919' => 'lja', 'Lj4g0026319' => 'lja', 'Lj4P210T17' => 'lonja', 'Lj5E124G2' => 'lonja', 'Lj5P124T52' => 'lonja', 'Lj6g0004694' => 'lja', 'Lj6g0014938' => 'lja', 'Lj7P99T29' => 'lonja', 'Lju470C11T7' => 'lonja', 'Lsat_1_v5_gn_2_78060' => 'lsa', 'Lsat_1_v5_gn_4_161541' => 'lsa', 'Lsat_1_v5_gn_5_14700' => 'lsa', 'Lsat_1_v5_gn_5_99221' => 'lsa', 'Lsat_1_v5_gn_8_95040' => 'lsa', 'Manes.01G140300' => 'mes', 'Manes.02G098500' => 'mes', 'Manes.03G074200' => 'mes', 'Manes.06G105200' => 'mes', 'Manes.13G111200' => 'mes', 'Manes.14G065500' => 'mes', 'Mapoly0065s0065' => 'mpo', 'MBI02_g37836_MAGBIO' => 'mbi', 'MBI05_g28544_MAGBIO' => 'mbi', 'MBI10_g06740_MAGBIO' => 'mbi', 'MBI11_g32385_MAGBIO' => 'mbi', 'MBI13_g20251_MAGBIO' => 'mbi', 'MCO03G603' => 'mco', 'MCO16G455' => 'mco', 'MD02G1138800' => 'mdo', 'MD02G1139200' => 'mdo', 'MD04G1041700' => 'mdo', 'MD05G1040200' => 'mdo', 'MD05G1249000' => 'mdo', 'MD06G1173500' => 'mdo', 'MD10G1046200' => 'mdo', 'MD10G1229600' => 'mdo', 'MD14G1180000' => 'mdo', 'MD15G1252100' => 'mdo', 'Medtr2g031760' => 'mtr', 'Medtr2g031960' => 'mtr', 'Medtr2g064300' => 'mtr', 'Medtr7g053520' => 'mtr', 'Medtr8g076780' => 'mtr', 'MELO3C002405.2' => 'cme', 'MELO3C003920.2' => 'cme', 'MELO3C007639.2' => 'cme', 'MELO3C007869.2' => 'cme', 'MELO3C011871.2' => 'cme', 'MELO3C034168.2' => 'cme', 'Migut.D01470' => 'egut', 'Migut.H00300' => 'egut', 'Migut.H02508' => 'egut', 'Migut.N00989' => 'egut', 'Migut.N00990' => 'egut', 'Migut.N01934' => 'egut', 'MSTRG.17770' => 'ama', 'MSTRG.23261' => 'ama', 'MSTRG.7600' => 'ama', 'Nitab4.5_0000073g0570' => 'nta', 'Nitab4.5_0000138g0090' => 'nta', 'Nitab4.5_0000142g0110' => 'nta', 'Nitab4.5_0000723g0100' => 'nta', 'Nitab4.5_0001875g0090' => 'nta', 'Nitab4.5_0002015g0010' => 'nta', 'Nitab4.5_0004025g0030' => 'nta', 'Nitab4.5_0004708g0040' => 'nta', 'Nitab4.5_0005023g0040' => 'nta', 'Nitab4.5_0008618g0010' => 'nta', 'Nn4g22755' => 'nnu', 'Nn4g24689' => 'nnu', 'Nn5g29714' => 'nnu', 'Nn5g30607' => 'nnu', 'Oeu002030.1' => 'oeu', 'Oeu011985.1' => 'oeu', 'Oeu018077.1' => 'oeu', 'Oeu018233.1' => 'oeu', 'Oeu032424.1' => 'oeu', 'Oeu056050.1' => 'oeu', 'Oeu058940.1' => 'oeu', 'Os02g0198900' => 'osa', 'Os03g0734400' => 'osa', 'Os05g0554100' => 'osa', 'Os07g0626100' => 'osa', 'Peaxi162Scf00047g02423' => 'pax', 'Peaxi162Scf00198g00103' => 'pax', 'Peaxi162Scf00241g10022' => 'pax', 'Peaxi162Scf00548g00057' => 'pax', 'Peaxi162Scf00556g00055' => 'pax', 'PGR042G0243' => 'pgr', 'PGR102G0269' => 'pgr', 'PGR102G1158' => 'pgr', 'PGR119G0889' => 'pgr', 'PGR119G1972' => 'pgr', 'PGSC0003DMG400001451' => 'stu', 'PGSC0003DMG400008867' => 'stu', 'PGSC0003DMG400014931' => 'stu', 'PGSC0003DMG400018715' => 'stu', 'PGSC0003DMG400021441' => 'stu', 'Phvul.002G273000' => 'pvu', 'Phvul.003G257500' => 'pvu', 'Phvul.005G074800' => 'pvu', 'Phvul.006G021600' => 'pvu', 'Phvul.006G124100' => 'pvu', 'Phvul.007G244500' => 'pvu', 'Potri.003G074800' => 'ptr', 'Potri.004G224300' => 'ptr', 'Potri.007G019100' => 'ptr', 'Potri.015G077200' => 'ptr', 'Pp3c12_17640' => 'ppa', 'Pp3c19_21200' => 'ppa', 'Pp3c21_6760' => 'ppa', 'Pp3c3_26860' => 'ppa', 'PRCOL_00003541' => 'pco', 'Prupe.1G195400' => 'ppe', 'Prupe.4G115200' => 'ppe', 'Prupe.5G173000' => 'ppe', 'Prupe.7G162000' => 'ppe', 'Prupe.8G053900' => 'ppe', 'Prupe.8G072700' => 'ppe', 'Psat1g015120' => 'psa', 'Psat1g164400' => 'psa', 'Psat1g164640' => 'psa', 'Psat3g150240' => 'psa', 'Psat4g096320' => 'psa', 'PSO063G4759' => 'pso', 'PSO339G1229' => 'pso', 'PSO339G3237' => 'pso', 'PSO384G4181' => 'pso', 'PSO384G4824' => 'pso', 'PSO541G0283' => 'pso', 'PSO541G0845' => 'pso', 'PSO675G0077' => 'pso', 'PSO675G7370' => 'pso', 'PSO832G3715' => 'pso', 'QL06p039532' => 'qlo', 'QL07p045230' => 'qlo', 'QL08p056981' => 'qlo', 'QL10p007541' => 'qlo', 'QL10p015865' => 'qlo', 'QL11p013638' => 'qlo', 'RcHm_v2.0_Chr2g0100351' => 'rch', 'RcHm_v2.0_Chr5g0020611' => 'rch', 'RcHm_v2.0_Chr6g0269241' => 'rch', 'RcHm_v2.0_Chr7g0193501' => 'rch', 'RcHm_v2.0_Chr7g0217101' => 'rch', 'RcHm_v2.0_Chr7g0217161' => 'rch', 'Rhsim03G0068400' => 'rsi', 'Rhsim06G0063500' => 'rsi', 'Rhsim08G0093100' => 'rsi', 'Rhsim08G0172700' => 'rsi', 'Rhsim08G0172800' => 'rsi', 'Sabra01G0170400' => 'sbr', 'Sabra03G0045500' => 'sbr', 'Sabra07G0016400' => 'sbr', 'Sabra12G0058200' => 'sbr', 'Sabra15G0101900' => 'sbr', 'SalBow3G1888' => 'sbo', 'SalBow3G2897' => 'sbo', 'SalBow4G2558' => 'sbo', 'SalBow6G0603' => 'sbo', 'SalBow6G4805' => 'sbo', 'SalBow6G5516' => 'sbo', 'SalBow8G3047' => 'sbo', 'SalBow8G3377' => 'sbo', 'SalBow8G4176' => 'sbo', 'Sc01g0002240' => 'sci', 'Sc03g0003230' => 'sci', 'Sc05g0004740' => 'sci', 'Sc12g0005310' => 'sci', 'Sed0004231' => 'sed', 'Sed0005290' => 'sed', 'Sed0005933' => 'sed', 'Sed0013334' => 'sed', 'Sed0013751' => 'sed', 'Sed0024267' => 'sed', 'SEGI_08694' => 'sgi', 'SEGI_09069' => 'sgi', 'SEGI_12175' => 'sgi', 'SEGI_23469' => 'sgi', 'SEGI_36105' => 'sgi', 'SGA_v2.0_scaffold51G18801' => 'sas', 'SGA_v2.0_scaffold62G21596' => 'sas', 'SGA_v2.0_scaffold72G24071' => 'sas', 'SHI08615' => 'shi', 'SHI16975' => 'shi', 'SMO270G0043' => 'smo', 'Solyc02g031970.1' => 'sly', 'Solyc02g088760.2' => 'sly', 'Solyc02g092300.1' => 'sly', 'Solyc09g010030.3' => 'sly', 'Solyc11g071530.1' => 'sly', 'Sopen02g010230' => 'spe', 'Sopen02g033470' => 'spe', 'Sopen02g036870' => 'spe', 'Sopen09g004770' => 'spe', 'Sopen11g029220' => 'spe', 'Sp3g04990' => 'spa', 'Sp5g25310' => 'spa', 'Sp6g12180' => 'spa', 'Sp7g34080' => 'spa', 'Sp7g35310' => 'spa', 'TAR371G0150' => 'tar', 'TAR376G0630' => 'tar', 'TAR381G0864' => 'tar', 'TAR622G0652' => 'tar', 'TAR626G0967' => 'tar', 'TAR627G0190' => 'tar', 'TAR627G0865' => 'tar', 'THA.LOC104802756' => 'tha', 'THA.LOC104807473' => 'tha', 'THA.LOC104811737' => 'tha', 'THA.LOC104822304' => 'tha', 'Thecc.01G027100' => 'tca', 'Thecc.01G073200' => 'tca', 'Thecc.02G006100' => 'tca', 'Thecc.03G013100' => 'tca', 'Thhalv10019124m.g' => 'esa', 'Thhalv10021590m.g' => 'esa', 'Thhalv10026420m.g' => 'esa', 'Thhalv10026763m.g' => 'esa', 'Thhalv10027419m.g' => 'esa', 'TPR.G21534' => 'tpr', 'TPR.G28435' => 'tpr', 'TPR.G29154' => 'tpr', 'TPR.G8028' => 'tpr', 'TPR.G8034' => 'tpr', 'TWI14G1176' => 'twi', 'TWI15G0681' => 'twi', 'TWI38G0313' => 'twi', 'TWI39G0852' => 'twi', 'TWI59G0342' => 'twi', 'TWI73G1286' => 'twi', 'unitig_26.g10136' => 'ugi', 'unitig_32.g10997' => 'ugi', 'unitig_37.g12051' => 'ugi', 'unitig_899.g14636' => 'ugi', 'unitig_92.g28191' => 'ugi', 'vmacro19392' => 'vma', 'vmacro22282' => 'vma', 'VMungo0251G0891' => 'vmu', 'VMungo0540G0215' => 'vmu', 'VMungo0647G0911' => 'vmu', 'VMungo1080G1379' => 'vmu', 'Zm00001eb205850' => 'zma', 'Zm00001eb215450' => 'zma', 'Zm00001eb235930' => 'zma', 'Zm00001eb295090' => 'zma', 'Zm00001eb327950' => 'zma', 'Zm00001eb343100' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001156', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001156' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001156', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '534', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001156' ) ), 'genes' => array( 'A03p34480' => 'bna', 'A03p64230' => 'bna', 'A03p65440' => 'bna', 'A05p41960' => 'bna', 'A07p31190' => 'bna', 'A08p22720' => 'bna', 'Aa31LG4G10710' => 'aar', 'Aa31LG5G16530' => 'aar', 'Aa31LG6G13220' => 'aar', 'Aa31LG6G14560' => 'aar', 'Actinidia19220' => 'ach', 'Actinidia19323' => 'ach', 'Actinidia22420' => 'ach', 'Ah.02g110810' => 'amhyb', 'Ah.05g178980' => 'amhyb', 'Ah.15g094680' => 'amhyb', 'AL2G29480' => 'aly', 'AL3G16880' => 'aly', 'AL4G22630' => 'aly', 'AL5G12780' => 'aly', 'AL7G13110' => 'aly', 'AL7G14670' => 'aly', 'Aqoxy2G02136' => 'aox', 'Aqoxy3G04261' => 'aox', 'Aqoxy5G00599' => 'aox', 'Aqoxy6G01200' => 'aox', 'Aqoxy6G01412' => 'aox', 'Aqoxy6G01858' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5TMB2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F3RDV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U7G1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WX4FN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0ANZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVE24N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE3SS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQ0X0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF3IUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YYYQ5L' => 'arhy', 'AT1G70190' => 'ath', 'AT2G03130' => 'ath', 'AT3G06040' => 'ath', 'AT4G36420' => 'ath', 'AT4G37660' => 'ath', 'ATR0068G065' => 'atr', 'ATR0564G309' => 'atr', 'ATR0629G117' => 'atr', 'ATR0665G652' => 'atr', 'ATR0705G215' => 'atr', 'ATR0739G108' => 'atr', 'ATR0739G148' => 'atr', 'ATR0749G086' => 'atr', 'ATR0752G124' => 'atr', 'Atru.chr10.430' => 'acertr', 'Atru.chr3.1019' => 'acertr', 'Atru.chr3.2886' => 'acertr', 'Atru.chr3.729' => 'acertr', 'Atru.chr9.2482' => 'acertr', 'AUR62001367' => 'cqu', 'AUR62004556' => 'cqu', 'AUR62008204' => 'cqu', 'AUR62015145' => 'cqu', 'AUR62017607' => 'cqu', 'AUR62022672' => 'cqu', 'AUR62025583' => 'cqu', 'AUR62030957' => 'cqu', 'AUR62033575' => 'cqu', 'BcaB03g12335' => 'bca', 'BcaB03g15533' => 'bca', 'BcaB04g19220' => 'bca', 'BcaC01g00394' => 'bca', 'BcaC01g04321' => 'bca', 'BcaC05g30063' => 'bca', 'BcaC05g30064' => 'bca', 'BcaC08g45837' => 'bca', 'BcaNung02072' => 'bca', 'BcaNung02075' => 'bca', 'BcaNung02077' => 'bca', 'BolC1t00148H' => 'bol', 'BolC3t16477H' => 'bol', 'BolC3t20167H' => 'bol', 'BolC5t34781H' => 'bol', 'BolC6t38745H' => 'bol', 'BolC7t46594H' => 'bol', 'BolC7t46669H' => 'bol', 'BraA03t12625Z' => 'bra', 'BraA03t15494Z' => 'bra', 'BraA03t15596Z' => 'bra', 'BraA05t22918Z' => 'bra', 'BraA07t30752Z' => 'bra', 'BraA08t34241Z' => 'bra', 'C01p01510' => 'bna', 'C03p41940' => 'bna', 'C05p61210' => 'bna', 'C06p36240' => 'bna', 'C07p61690' => 'bna', 'C07p62540' => 'bna', 'CAN.G1075.42' => 'can', 'CAN.G1492.7' => 'can', 'CAN.G206.220' => 'can', 'CAN.G397.75' => 'can', 'CAN.G439.33' => 'can', 'CAN.G678.14' => 'can', 'CANSAT01G1841' => 'cansat', 'CANSAT01G3018' => 'cansat', 'CANSAT80G0830' => 'cansat', 'CANSAT80G1509' => 'cansat', 'CARHR063310' => 'chi', 'CARHR080540' => 'chi', 'CARHR244750' => 'chi', 'CARHR246050' => 'chi', 'Carub.0002s1688' => 'cru', 'Carub.0003s0547' => 'cru', 'Carub.0005s0196' => 'cru', 'Carub.0007s0261' => 'cru', 'Carub.0007s0389' => 'cru', 'Ca_00920_v3' => 'car', 'Ca_00925_v3' => 'car', 'Ca_03176_v3' => 'car', 'Ca_07501_v3' => 'car', 'Ca_11268_v3' => 'car', 'CBR_g2871' => 'cbr', 'Cc00_g05000' => 'ccan', 'Cc00_g05010' => 'ccan', 'Cc00_g05020' => 'ccan', 'Cc07_g10100' => 'ccan', 'Cc09_g05760' => 'ccan', 'Cc11_g12810' => 'ccan', 'CDE02G1704' => 'cde', 'CDE05G0428' => 'cde', 'Cfa000678' => 'cfa', 'Cfa004136' => 'cfa', 'Cfa019137' => 'cfa', 'Ciclev10012849m.g' => 'ccl', 'Ciclev10016633m.g' => 'ccl', 'Ciclev10026576m.g' => 'ccl', 'Ciclev10026634m.g' => 'ccl', 'CiPaw.01G004300' => 'cil', 'CiPaw.07G053000' => 'cil', 'CiPaw.09G074700' => 'cil', 'CiPaw.10G062700' => 'cil', 'CiPaw.11G025700' => 'cil', 'ClCG01G017620' => 'cla', 'ClCG01G019960' => 'cla', 'ClCG03G004220' => 'cla', 'ClCG06G015740' => 'cla', 'ClCG07G016250' => 'cla', 'COL.COLO4_11582' => 'col', 'COL.COLO4_17636' => 'col', 'COL.COLO4_22000' => 'col', 'COL.COLO4_30043' => 'col', 'COL.COLO4_30227' => 'col', 'COL.COLO4_30231' => 'col', 'Cpa.g.c45949' => 'cpa', 'Cpa.g.sc153.25' => 'cpa', 'Cpa.g.sc286.9' => 'cpa', 'Cpa.g.sc33.37' => 'cpa', 'Cpa.g.sc6.11' => 'cpa', 'Cpa.g.sc6.182' => 'cpa', 'Cre06.g293700' => 'cre', 'CsaV3_1G010160' => 'csa', 'CsaV3_3G028630' => 'csa', 'CsaV3_6G044160' => 'csa', 'CsaV3_6G046720' => 'csa', 'CSS0002792' => 'camsi', 'CSS0013566' => 'camsi', 'CSS0016934' => 'camsi', 'CSS0023118' => 'camsi', 'CSS0047861' => 'camsi', 'DCAR_000070' => 'dca', 'DCAR_001292' => 'dca', 'DCAR_004338' => 'dca', 'DCAR_024217' => 'dca', 'DCAR_025801' => 'dca', 'DCAR_025975' => 'dca', 'DCAR_026138' => 'dca', 'DCAR_030083' => 'dca', 'Dinv04043' => 'din', 'Dinv13838' => 'din', 'Dinv17478' => 'din', 'Dinv20649' => 'din', 'Dinv26936' => 'din', 'Dinv40032' => 'din', 'Duzib132G0565' => 'dzi', 'Duzib147G0140' => 'dzi', 'Duzib147G0485' => 'dzi', 'Duzib187G1810' => 'dzi', 'Duzib205G0148' => 'dzi', 'Duzib248G0830' => 'dzi', 'Duzib264G0887' => 'dzi', 'Duzib264G0950' => 'dzi', 'ECA232G2449' => 'eca', 'ECA234G3166' => 'eca', 'ECA238G1178' => 'eca', 'ECA246G0236' => 'eca', 'ECA247G0150' => 'eca', 'EL10Ac1g00191' => 'bvu', 'EL10Ac3g06332' => 'bvu', 'EL10Ac5g10741' => 'bvu', 'EL10Ac9g22855' => 'bvu', 'Eucgr.D02092' => 'egr', 'Eucgr.E04306' => 'egr', 'Eucgr.H02311' => 'egr', 'FAN04G0454' => 'fan', 'FAN04G1980' => 'fan', 'FAN08G0627' => 'fan', 'FAN08G3317' => 'fan', 'FAN11G3550' => 'fan', 'FAN13G2117' => 'fan', 'FAN13G3194' => 'fan', 'FAN15G1597' => 'fan', 'FAN16G2237' => 'fan', 'FAN18G0573' => 'fan', 'FAN18G0963' => 'fan', 'FAN18G2375' => 'fan', 'FAN19G0589' => 'fan', 'FAN19G1670' => 'fan', 'FAN20G0933' => 'fan', 'FAN21G1329' => 'fan', 'FAN23G1548' => 'fan', 'FAN24G2926' => 'fan', 'FAN24G2997' => 'fan', 'FAN25G1424' => 'fan', 'FAN26G1210' => 'fan', 'FAN28G0357' => 'fan', 'FAN28G1657' => 'fan', 'FAN28G2681' => 'fan', 'FvH4_1g12480' => 'fve', 'FvH4_2g11030' => 'fve', 'FvH4_3g12640' => 'fve', 'FvH4_5g04711' => 'fve', 'FvH4_5g05340' => 'fve', 'FvH4_5g26350' => 'fve', 'Glyma.02G052600' => 'gma', 'Glyma.08G164000' => 'gma', 'Glyma.09G029000' => 'gma', 'Glyma.13G077100' => 'gma', 'Glyma.15G134800' => 'gma', 'Glyma.15G263200' => 'gma', 'Glyma.20G052800' => 'gma', 'Gohir.A03G217800' => 'ghi', 'Gohir.A10G089600' => 'ghi', 'Gohir.A11G181200' => 'ghi', 'Gohir.A12G274300' => 'ghi', 'Gohir.D02G239800' => 'ghi', 'Gohir.D10G098500' => 'ghi', 'Gohir.D10G167100' => 'ghi', 'Gohir.D11G187700' => 'ghi', 'Gohir.D12G275000' => 'ghi', 'Gorai.005G268200' => 'gra', 'Gorai.007G199600' => 'gra', 'Gorai.008G295500' => 'gra', 'Gorai.011G108200' => 'gra', 'Gorai.011G186400' => 'gra', 'GSVIVG01007737001' => 'vvi', 'GSVIVG01012121001' => 'vvi', 'HanXRQChr05g0156251' => 'han', 'HanXRQChr07g0190371' => 'han', 'HanXRQChr07g0196421' => 'han', 'HanXRQChr08g0231921' => 'han', 'HanXRQChr12g0355891' => 'han', 'HanXRQChr14g0445281' => 'han', 'HanXRQChr16g0522361' => 'han', 'Haze_03841' => 'cav', 'Haze_06140' => 'cav', 'Haze_07504' => 'cav', 'Haze_15278' => 'cav', 'Haze_26791' => 'cav', 'Hma1.2p1_0176F.1_g077370' => 'hma', 'Hma1.2p1_0327F.1_g126500' => 'hma', 'Hma1.2p1_0701F.1_g205880' => 'hma', 'Hma1.2p1_0852F.1_g228590' => 'hma', 'Hma1.2p1_0913F.1_g235980' => 'hma', 'Hma1.2p1_2409F.1_g321500' => 'hma', 'HPP92_008592' => 'vpl', 'HPP92_021567' => 'vpl', 'HPP92_027134' => 'vpl', 'HPP92_027258' => 'vpl', 'Hund08877' => 'sun', 'Lalb_Chr01g0015551' => 'lal', 'Lalb_Chr09g0333401' => 'lal', 'Lalb_Chr16g0391001' => 'lal', 'Lalb_Chr18g0058261' => 'lal', 'Lalb_Chr18g0058311' => 'lal', 'Lalb_Chr25g0284381' => 'lal', 'Lj1P1147T19' => 'lonja', 'Lj3g0004919' => 'lja', 'Lj4g0026319' => 'lja', 'Lj4P210T17' => 'lonja', 'Lj5E124G2' => 'lonja', 'Lj5P124T52' => 'lonja', 'Lj6g0004694' => 'lja', 'Lj6g0014938' => 'lja', 'Lj7P99T29' => 'lonja', 'Lju470C11T7' => 'lonja', 'Lsat_1_v5_gn_2_78060' => 'lsa', 'Lsat_1_v5_gn_4_161541' => 'lsa', 'Lsat_1_v5_gn_5_14700' => 'lsa', 'Lsat_1_v5_gn_5_99221' => 'lsa', 'Lsat_1_v5_gn_8_95040' => 'lsa', 'Manes.01G140300' => 'mes', 'Manes.02G098500' => 'mes', 'Manes.03G074200' => 'mes', 'Manes.06G105200' => 'mes', 'Manes.13G111200' => 'mes', 'Manes.14G065500' => 'mes', 'Mapoly0065s0065' => 'mpo', 'MBI02_g37836_MAGBIO' => 'mbi', 'MBI05_g28544_MAGBIO' => 'mbi', 'MBI10_g06740_MAGBIO' => 'mbi', 'MBI11_g32385_MAGBIO' => 'mbi', 'MBI13_g20251_MAGBIO' => 'mbi', 'MCO03G603' => 'mco', 'MCO16G455' => 'mco', 'MD02G1138800' => 'mdo', 'MD02G1139200' => 'mdo', 'MD04G1041700' => 'mdo', 'MD05G1040200' => 'mdo', 'MD05G1249000' => 'mdo', 'MD06G1173500' => 'mdo', 'MD10G1046200' => 'mdo', 'MD10G1229600' => 'mdo', 'MD14G1180000' => 'mdo', 'MD15G1252100' => 'mdo', 'Medtr2g031760' => 'mtr', 'Medtr2g031960' => 'mtr', 'Medtr2g064300' => 'mtr', 'Medtr7g053520' => 'mtr', 'Medtr8g076780' => 'mtr', 'MELO3C002405.2' => 'cme', 'MELO3C003920.2' => 'cme', 'MELO3C007639.2' => 'cme', 'MELO3C007869.2' => 'cme', 'MELO3C011871.2' => 'cme', 'MELO3C034168.2' => 'cme', 'Migut.D01470' => 'egut', 'Migut.H00300' => 'egut', 'Migut.H02508' => 'egut', 'Migut.N00989' => 'egut', 'Migut.N00990' => 'egut', 'Migut.N01934' => 'egut', 'MSTRG.17770' => 'ama', 'MSTRG.23261' => 'ama', 'MSTRG.7600' => 'ama', 'Nitab4.5_0000073g0570' => 'nta', 'Nitab4.5_0000138g0090' => 'nta', 'Nitab4.5_0000142g0110' => 'nta', 'Nitab4.5_0000723g0100' => 'nta', 'Nitab4.5_0001875g0090' => 'nta', 'Nitab4.5_0002015g0010' => 'nta', 'Nitab4.5_0004025g0030' => 'nta', 'Nitab4.5_0004708g0040' => 'nta', 'Nitab4.5_0005023g0040' => 'nta', 'Nitab4.5_0008618g0010' => 'nta', 'Nn4g22755' => 'nnu', 'Nn4g24689' => 'nnu', 'Nn5g29714' => 'nnu', 'Nn5g30607' => 'nnu', 'Oeu002030.1' => 'oeu', 'Oeu011985.1' => 'oeu', 'Oeu018077.1' => 'oeu', 'Oeu018233.1' => 'oeu', 'Oeu032424.1' => 'oeu', 'Oeu056050.1' => 'oeu', 'Oeu058940.1' => 'oeu', 'Os02g0198900' => 'osa', 'Os03g0734400' => 'osa', 'Os05g0554100' => 'osa', 'Os07g0626100' => 'osa', 'Peaxi162Scf00047g02423' => 'pax', 'Peaxi162Scf00198g00103' => 'pax', 'Peaxi162Scf00241g10022' => 'pax', 'Peaxi162Scf00548g00057' => 'pax', 'Peaxi162Scf00556g00055' => 'pax', 'PGR042G0243' => 'pgr', 'PGR102G0269' => 'pgr', 'PGR102G1158' => 'pgr', 'PGR119G0889' => 'pgr', 'PGR119G1972' => 'pgr', 'PGSC0003DMG400001451' => 'stu', 'PGSC0003DMG400008867' => 'stu', 'PGSC0003DMG400014931' => 'stu', 'PGSC0003DMG400018715' => 'stu', 'PGSC0003DMG400021441' => 'stu', 'Phvul.002G273000' => 'pvu', 'Phvul.003G257500' => 'pvu', 'Phvul.005G074800' => 'pvu', 'Phvul.006G021600' => 'pvu', 'Phvul.006G124100' => 'pvu', 'Phvul.007G244500' => 'pvu', 'Potri.003G074800' => 'ptr', 'Potri.004G224300' => 'ptr', 'Potri.007G019100' => 'ptr', 'Potri.015G077200' => 'ptr', 'Pp3c12_17640' => 'ppa', 'Pp3c19_21200' => 'ppa', 'Pp3c21_6760' => 'ppa', 'Pp3c3_26860' => 'ppa', 'PRCOL_00003541' => 'pco', 'Prupe.1G195400' => 'ppe', 'Prupe.4G115200' => 'ppe', 'Prupe.5G173000' => 'ppe', 'Prupe.7G162000' => 'ppe', 'Prupe.8G053900' => 'ppe', 'Prupe.8G072700' => 'ppe', 'Psat1g015120' => 'psa', 'Psat1g164400' => 'psa', 'Psat1g164640' => 'psa', 'Psat3g150240' => 'psa', 'Psat4g096320' => 'psa', 'PSO063G4759' => 'pso', 'PSO339G1229' => 'pso', 'PSO339G3237' => 'pso', 'PSO384G4181' => 'pso', 'PSO384G4824' => 'pso', 'PSO541G0283' => 'pso', 'PSO541G0845' => 'pso', 'PSO675G0077' => 'pso', 'PSO675G7370' => 'pso', 'PSO832G3715' => 'pso', 'QL06p039532' => 'qlo', 'QL07p045230' => 'qlo', 'QL08p056981' => 'qlo', 'QL10p007541' => 'qlo', 'QL10p015865' => 'qlo', 'QL11p013638' => 'qlo', 'RcHm_v2.0_Chr2g0100351' => 'rch', 'RcHm_v2.0_Chr5g0020611' => 'rch', 'RcHm_v2.0_Chr6g0269241' => 'rch', 'RcHm_v2.0_Chr7g0193501' => 'rch', 'RcHm_v2.0_Chr7g0217101' => 'rch', 'RcHm_v2.0_Chr7g0217161' => 'rch', 'Rhsim03G0068400' => 'rsi', 'Rhsim06G0063500' => 'rsi', 'Rhsim08G0093100' => 'rsi', 'Rhsim08G0172700' => 'rsi', 'Rhsim08G0172800' => 'rsi', 'Sabra01G0170400' => 'sbr', 'Sabra03G0045500' => 'sbr', 'Sabra07G0016400' => 'sbr', 'Sabra12G0058200' => 'sbr', 'Sabra15G0101900' => 'sbr', 'SalBow3G1888' => 'sbo', 'SalBow3G2897' => 'sbo', 'SalBow4G2558' => 'sbo', 'SalBow6G0603' => 'sbo', 'SalBow6G4805' => 'sbo', 'SalBow6G5516' => 'sbo', 'SalBow8G3047' => 'sbo', 'SalBow8G3377' => 'sbo', 'SalBow8G4176' => 'sbo', 'Sc01g0002240' => 'sci', 'Sc03g0003230' => 'sci', 'Sc05g0004740' => 'sci', 'Sc12g0005310' => 'sci', 'Sed0004231' => 'sed', 'Sed0005290' => 'sed', 'Sed0005933' => 'sed', 'Sed0013334' => 'sed', 'Sed0013751' => 'sed', 'Sed0024267' => 'sed', 'SEGI_08694' => 'sgi', 'SEGI_09069' => 'sgi', 'SEGI_12175' => 'sgi', 'SEGI_23469' => 'sgi', 'SEGI_36105' => 'sgi', 'SGA_v2.0_scaffold51G18801' => 'sas', 'SGA_v2.0_scaffold62G21596' => 'sas', 'SGA_v2.0_scaffold72G24071' => 'sas', 'SHI08615' => 'shi', 'SHI16975' => 'shi', 'SMO270G0043' => 'smo', 'Solyc02g031970.1' => 'sly', 'Solyc02g088760.2' => 'sly', 'Solyc02g092300.1' => 'sly', 'Solyc09g010030.3' => 'sly', 'Solyc11g071530.1' => 'sly', 'Sopen02g010230' => 'spe', 'Sopen02g033470' => 'spe', 'Sopen02g036870' => 'spe', 'Sopen09g004770' => 'spe', 'Sopen11g029220' => 'spe', 'Sp3g04990' => 'spa', 'Sp5g25310' => 'spa', 'Sp6g12180' => 'spa', 'Sp7g34080' => 'spa', 'Sp7g35310' => 'spa', 'TAR371G0150' => 'tar', 'TAR376G0630' => 'tar', 'TAR381G0864' => 'tar', 'TAR622G0652' => 'tar', 'TAR626G0967' => 'tar', 'TAR627G0190' => 'tar', 'TAR627G0865' => 'tar', 'THA.LOC104802756' => 'tha', 'THA.LOC104807473' => 'tha', 'THA.LOC104811737' => 'tha', 'THA.LOC104822304' => 'tha', 'Thecc.01G027100' => 'tca', 'Thecc.01G073200' => 'tca', 'Thecc.02G006100' => 'tca', 'Thecc.03G013100' => 'tca', 'Thhalv10019124m.g' => 'esa', 'Thhalv10021590m.g' => 'esa', 'Thhalv10026420m.g' => 'esa', 'Thhalv10026763m.g' => 'esa', 'Thhalv10027419m.g' => 'esa', 'TPR.G21534' => 'tpr', 'TPR.G28435' => 'tpr', 'TPR.G29154' => 'tpr', 'TPR.G8028' => 'tpr', 'TPR.G8034' => 'tpr', 'TWI14G1176' => 'twi', 'TWI15G0681' => 'twi', 'TWI38G0313' => 'twi', 'TWI39G0852' => 'twi', 'TWI59G0342' => 'twi', 'TWI73G1286' => 'twi', 'unitig_26.g10136' => 'ugi', 'unitig_32.g10997' => 'ugi', 'unitig_37.g12051' => 'ugi', 'unitig_899.g14636' => 'ugi', 'unitig_92.g28191' => 'ugi', 'vmacro19392' => 'vma', 'vmacro22282' => 'vma', 'VMungo0251G0891' => 'vmu', 'VMungo0540G0215' => 'vmu', 'VMungo0647G0911' => 'vmu', 'VMungo1080G1379' => 'vmu', 'Zm00001eb205850' => 'zma', 'Zm00001eb215450' => 'zma', 'Zm00001eb235930' => 'zma', 'Zm00001eb295090' => 'zma', 'Zm00001eb327950' => 'zma', 'Zm00001eb343100' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001156' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001156' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001156' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001156' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001156', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '534', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p34480' => 'bna', 'A03p64230' => 'bna', 'A03p65440' => 'bna', 'A05p41960' => 'bna', 'A07p31190' => 'bna', 'A08p22720' => 'bna', 'Aa31LG4G10710' => 'aar', 'Aa31LG5G16530' => 'aar', 'Aa31LG6G13220' => 'aar', 'Aa31LG6G14560' => 'aar', 'Actinidia19220' => 'ach', 'Actinidia19323' => 'ach', 'Actinidia22420' => 'ach', 'Ah.02g110810' => 'amhyb', 'Ah.05g178980' => 'amhyb', 'Ah.15g094680' => 'amhyb', 'AL2G29480' => 'aly', 'AL3G16880' => 'aly', 'AL4G22630' => 'aly', 'AL5G12780' => 'aly', 'AL7G13110' => 'aly', 'AL7G14670' => 'aly', 'Aqoxy2G02136' => 'aox', 'Aqoxy3G04261' => 'aox', 'Aqoxy5G00599' => 'aox', 'Aqoxy6G01200' => 'aox', 'Aqoxy6G01412' => 'aox', 'Aqoxy6G01858' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5TMB2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F3RDV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U7G1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WX4FN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0ANZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVE24N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE3SS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQ0X0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF3IUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YYYQ5L' => 'arhy', 'AT1G70190' => 'ath', 'AT2G03130' => 'ath', 'AT3G06040' => 'ath', 'AT4G36420' => 'ath', 'AT4G37660' => 'ath', 'ATR0068G065' => 'atr', 'ATR0564G309' => 'atr', 'ATR0629G117' => 'atr', 'ATR0665G652' => 'atr', 'ATR0705G215' => 'atr', 'ATR0739G108' => 'atr', 'ATR0739G148' => 'atr', 'ATR0749G086' => 'atr', 'ATR0752G124' => 'atr', 'Atru.chr10.430' => 'acertr', 'Atru.chr3.1019' => 'acertr', 'Atru.chr3.2886' => 'acertr', 'Atru.chr3.729' => 'acertr', 'Atru.chr9.2482' => 'acertr', 'AUR62001367' => 'cqu', 'AUR62004556' => 'cqu', 'AUR62008204' => 'cqu', 'AUR62015145' => 'cqu', 'AUR62017607' => 'cqu', 'AUR62022672' => 'cqu', 'AUR62025583' => 'cqu', 'AUR62030957' => 'cqu', 'AUR62033575' => 'cqu', 'BcaB03g12335' => 'bca', 'BcaB03g15533' => 'bca', 'BcaB04g19220' => 'bca', 'BcaC01g00394' => 'bca', 'BcaC01g04321' => 'bca', 'BcaC05g30063' => 'bca', 'BcaC05g30064' => 'bca', 'BcaC08g45837' => 'bca', 'BcaNung02072' => 'bca', 'BcaNung02075' => 'bca', 'BcaNung02077' => 'bca', 'BolC1t00148H' => 'bol', 'BolC3t16477H' => 'bol', 'BolC3t20167H' => 'bol', 'BolC5t34781H' => 'bol', 'BolC6t38745H' => 'bol', 'BolC7t46594H' => 'bol', 'BolC7t46669H' => 'bol', 'BraA03t12625Z' => 'bra', 'BraA03t15494Z' => 'bra', 'BraA03t15596Z' => 'bra', 'BraA05t22918Z' => 'bra', 'BraA07t30752Z' => 'bra', 'BraA08t34241Z' => 'bra', 'C01p01510' => 'bna', 'C03p41940' => 'bna', 'C05p61210' => 'bna', 'C06p36240' => 'bna', 'C07p61690' => 'bna', 'C07p62540' => 'bna', 'CAN.G1075.42' => 'can', 'CAN.G1492.7' => 'can', 'CAN.G206.220' => 'can', 'CAN.G397.75' => 'can', 'CAN.G439.33' => 'can', 'CAN.G678.14' => 'can', 'CANSAT01G1841' => 'cansat', 'CANSAT01G3018' => 'cansat', 'CANSAT80G0830' => 'cansat', 'CANSAT80G1509' => 'cansat', 'CARHR063310' => 'chi', 'CARHR080540' => 'chi', 'CARHR244750' => 'chi', 'CARHR246050' => 'chi', 'Carub.0002s1688' => 'cru', 'Carub.0003s0547' => 'cru', 'Carub.0005s0196' => 'cru', 'Carub.0007s0261' => 'cru', 'Carub.0007s0389' => 'cru', 'Ca_00920_v3' => 'car', 'Ca_00925_v3' => 'car', 'Ca_03176_v3' => 'car', 'Ca_07501_v3' => 'car', 'Ca_11268_v3' => 'car', 'CBR_g2871' => 'cbr', 'Cc00_g05000' => 'ccan', 'Cc00_g05010' => 'ccan', 'Cc00_g05020' => 'ccan', 'Cc07_g10100' => 'ccan', 'Cc09_g05760' => 'ccan', 'Cc11_g12810' => 'ccan', 'CDE02G1704' => 'cde', 'CDE05G0428' => 'cde', 'Cfa000678' => 'cfa', 'Cfa004136' => 'cfa', 'Cfa019137' => 'cfa', 'Ciclev10012849m.g' => 'ccl', 'Ciclev10016633m.g' => 'ccl', 'Ciclev10026576m.g' => 'ccl', 'Ciclev10026634m.g' => 'ccl', 'CiPaw.01G004300' => 'cil', 'CiPaw.07G053000' => 'cil', 'CiPaw.09G074700' => 'cil', 'CiPaw.10G062700' => 'cil', 'CiPaw.11G025700' => 'cil', 'ClCG01G017620' => 'cla', 'ClCG01G019960' => 'cla', 'ClCG03G004220' => 'cla', 'ClCG06G015740' => 'cla', 'ClCG07G016250' => 'cla', 'COL.COLO4_11582' => 'col', 'COL.COLO4_17636' => 'col', 'COL.COLO4_22000' => 'col', 'COL.COLO4_30043' => 'col', 'COL.COLO4_30227' => 'col', 'COL.COLO4_30231' => 'col', 'Cpa.g.c45949' => 'cpa', 'Cpa.g.sc153.25' => 'cpa', 'Cpa.g.sc286.9' => 'cpa', 'Cpa.g.sc33.37' => 'cpa', 'Cpa.g.sc6.11' => 'cpa', 'Cpa.g.sc6.182' => 'cpa', 'Cre06.g293700' => 'cre', 'CsaV3_1G010160' => 'csa', 'CsaV3_3G028630' => 'csa', 'CsaV3_6G044160' => 'csa', 'CsaV3_6G046720' => 'csa', 'CSS0002792' => 'camsi', 'CSS0013566' => 'camsi', 'CSS0016934' => 'camsi', 'CSS0023118' => 'camsi', 'CSS0047861' => 'camsi', 'DCAR_000070' => 'dca', 'DCAR_001292' => 'dca', 'DCAR_004338' => 'dca', 'DCAR_024217' => 'dca', 'DCAR_025801' => 'dca', 'DCAR_025975' => 'dca', 'DCAR_026138' => 'dca', 'DCAR_030083' => 'dca', 'Dinv04043' => 'din', 'Dinv13838' => 'din', 'Dinv17478' => 'din', 'Dinv20649' => 'din', 'Dinv26936' => 'din', 'Dinv40032' => 'din', 'Duzib132G0565' => 'dzi', 'Duzib147G0140' => 'dzi', 'Duzib147G0485' => 'dzi', 'Duzib187G1810' => 'dzi', 'Duzib205G0148' => 'dzi', 'Duzib248G0830' => 'dzi', 'Duzib264G0887' => 'dzi', 'Duzib264G0950' => 'dzi', 'ECA232G2449' => 'eca', 'ECA234G3166' => 'eca', 'ECA238G1178' => 'eca', 'ECA246G0236' => 'eca', 'ECA247G0150' => 'eca', 'EL10Ac1g00191' => 'bvu', 'EL10Ac3g06332' => 'bvu', 'EL10Ac5g10741' => 'bvu', 'EL10Ac9g22855' => 'bvu', 'Eucgr.D02092' => 'egr', 'Eucgr.E04306' => 'egr', 'Eucgr.H02311' => 'egr', 'FAN04G0454' => 'fan', 'FAN04G1980' => 'fan', 'FAN08G0627' => 'fan', 'FAN08G3317' => 'fan', 'FAN11G3550' => 'fan', 'FAN13G2117' => 'fan', 'FAN13G3194' => 'fan', 'FAN15G1597' => 'fan', 'FAN16G2237' => 'fan', 'FAN18G0573' => 'fan', 'FAN18G0963' => 'fan', 'FAN18G2375' => 'fan', 'FAN19G0589' => 'fan', 'FAN19G1670' => 'fan', 'FAN20G0933' => 'fan', 'FAN21G1329' => 'fan', 'FAN23G1548' => 'fan', 'FAN24G2926' => 'fan', 'FAN24G2997' => 'fan', 'FAN25G1424' => 'fan', 'FAN26G1210' => 'fan', 'FAN28G0357' => 'fan', 'FAN28G1657' => 'fan', 'FAN28G2681' => 'fan', 'FvH4_1g12480' => 'fve', 'FvH4_2g11030' => 'fve', 'FvH4_3g12640' => 'fve', 'FvH4_5g04711' => 'fve', 'FvH4_5g05340' => 'fve', 'FvH4_5g26350' => 'fve', 'Glyma.02G052600' => 'gma', 'Glyma.08G164000' => 'gma', 'Glyma.09G029000' => 'gma', 'Glyma.13G077100' => 'gma', 'Glyma.15G134800' => 'gma', 'Glyma.15G263200' => 'gma', 'Glyma.20G052800' => 'gma', 'Gohir.A03G217800' => 'ghi', 'Gohir.A10G089600' => 'ghi', 'Gohir.A11G181200' => 'ghi', 'Gohir.A12G274300' => 'ghi', 'Gohir.D02G239800' => 'ghi', 'Gohir.D10G098500' => 'ghi', 'Gohir.D10G167100' => 'ghi', 'Gohir.D11G187700' => 'ghi', 'Gohir.D12G275000' => 'ghi', 'Gorai.005G268200' => 'gra', 'Gorai.007G199600' => 'gra', 'Gorai.008G295500' => 'gra', 'Gorai.011G108200' => 'gra', 'Gorai.011G186400' => 'gra', 'GSVIVG01007737001' => 'vvi', 'GSVIVG01012121001' => 'vvi', 'HanXRQChr05g0156251' => 'han', 'HanXRQChr07g0190371' => 'han', 'HanXRQChr07g0196421' => 'han', 'HanXRQChr08g0231921' => 'han', 'HanXRQChr12g0355891' => 'han', 'HanXRQChr14g0445281' => 'han', 'HanXRQChr16g0522361' => 'han', 'Haze_03841' => 'cav', 'Haze_06140' => 'cav', 'Haze_07504' => 'cav', 'Haze_15278' => 'cav', 'Haze_26791' => 'cav', 'Hma1.2p1_0176F.1_g077370' => 'hma', 'Hma1.2p1_0327F.1_g126500' => 'hma', 'Hma1.2p1_0701F.1_g205880' => 'hma', 'Hma1.2p1_0852F.1_g228590' => 'hma', 'Hma1.2p1_0913F.1_g235980' => 'hma', 'Hma1.2p1_2409F.1_g321500' => 'hma', 'HPP92_008592' => 'vpl', 'HPP92_021567' => 'vpl', 'HPP92_027134' => 'vpl', 'HPP92_027258' => 'vpl', 'Hund08877' => 'sun', 'Lalb_Chr01g0015551' => 'lal', 'Lalb_Chr09g0333401' => 'lal', 'Lalb_Chr16g0391001' => 'lal', 'Lalb_Chr18g0058261' => 'lal', 'Lalb_Chr18g0058311' => 'lal', 'Lalb_Chr25g0284381' => 'lal', 'Lj1P1147T19' => 'lonja', 'Lj3g0004919' => 'lja', 'Lj4g0026319' => 'lja', 'Lj4P210T17' => 'lonja', 'Lj5E124G2' => 'lonja', 'Lj5P124T52' => 'lonja', 'Lj6g0004694' => 'lja', 'Lj6g0014938' => 'lja', 'Lj7P99T29' => 'lonja', 'Lju470C11T7' => 'lonja', 'Lsat_1_v5_gn_2_78060' => 'lsa', 'Lsat_1_v5_gn_4_161541' => 'lsa', 'Lsat_1_v5_gn_5_14700' => 'lsa', 'Lsat_1_v5_gn_5_99221' => 'lsa', 'Lsat_1_v5_gn_8_95040' => 'lsa', 'Manes.01G140300' => 'mes', 'Manes.02G098500' => 'mes', 'Manes.03G074200' => 'mes', 'Manes.06G105200' => 'mes', 'Manes.13G111200' => 'mes', 'Manes.14G065500' => 'mes', 'Mapoly0065s0065' => 'mpo', 'MBI02_g37836_MAGBIO' => 'mbi', 'MBI05_g28544_MAGBIO' => 'mbi', 'MBI10_g06740_MAGBIO' => 'mbi', 'MBI11_g32385_MAGBIO' => 'mbi', 'MBI13_g20251_MAGBIO' => 'mbi', 'MCO03G603' => 'mco', 'MCO16G455' => 'mco', 'MD02G1138800' => 'mdo', 'MD02G1139200' => 'mdo', 'MD04G1041700' => 'mdo', 'MD05G1040200' => 'mdo', 'MD05G1249000' => 'mdo', 'MD06G1173500' => 'mdo', 'MD10G1046200' => 'mdo', 'MD10G1229600' => 'mdo', 'MD14G1180000' => 'mdo', 'MD15G1252100' => 'mdo', 'Medtr2g031760' => 'mtr', 'Medtr2g031960' => 'mtr', 'Medtr2g064300' => 'mtr', 'Medtr7g053520' => 'mtr', 'Medtr8g076780' => 'mtr', 'MELO3C002405.2' => 'cme', 'MELO3C003920.2' => 'cme', 'MELO3C007639.2' => 'cme', 'MELO3C007869.2' => 'cme', 'MELO3C011871.2' => 'cme', 'MELO3C034168.2' => 'cme', 'Migut.D01470' => 'egut', 'Migut.H00300' => 'egut', 'Migut.H02508' => 'egut', 'Migut.N00989' => 'egut', 'Migut.N00990' => 'egut', 'Migut.N01934' => 'egut', 'MSTRG.17770' => 'ama', 'MSTRG.23261' => 'ama', 'MSTRG.7600' => 'ama', 'Nitab4.5_0000073g0570' => 'nta', 'Nitab4.5_0000138g0090' => 'nta', 'Nitab4.5_0000142g0110' => 'nta', 'Nitab4.5_0000723g0100' => 'nta', 'Nitab4.5_0001875g0090' => 'nta', 'Nitab4.5_0002015g0010' => 'nta', 'Nitab4.5_0004025g0030' => 'nta', 'Nitab4.5_0004708g0040' => 'nta', 'Nitab4.5_0005023g0040' => 'nta', 'Nitab4.5_0008618g0010' => 'nta', 'Nn4g22755' => 'nnu', 'Nn4g24689' => 'nnu', 'Nn5g29714' => 'nnu', 'Nn5g30607' => 'nnu', 'Oeu002030.1' => 'oeu', 'Oeu011985.1' => 'oeu', 'Oeu018077.1' => 'oeu', 'Oeu018233.1' => 'oeu', 'Oeu032424.1' => 'oeu', 'Oeu056050.1' => 'oeu', 'Oeu058940.1' => 'oeu', 'Os02g0198900' => 'osa', 'Os03g0734400' => 'osa', 'Os05g0554100' => 'osa', 'Os07g0626100' => 'osa', 'Peaxi162Scf00047g02423' => 'pax', 'Peaxi162Scf00198g00103' => 'pax', 'Peaxi162Scf00241g10022' => 'pax', 'Peaxi162Scf00548g00057' => 'pax', 'Peaxi162Scf00556g00055' => 'pax', 'PGR042G0243' => 'pgr', 'PGR102G0269' => 'pgr', 'PGR102G1158' => 'pgr', 'PGR119G0889' => 'pgr', 'PGR119G1972' => 'pgr', 'PGSC0003DMG400001451' => 'stu', 'PGSC0003DMG400008867' => 'stu', 'PGSC0003DMG400014931' => 'stu', 'PGSC0003DMG400018715' => 'stu', 'PGSC0003DMG400021441' => 'stu', 'Phvul.002G273000' => 'pvu', 'Phvul.003G257500' => 'pvu', 'Phvul.005G074800' => 'pvu', 'Phvul.006G021600' => 'pvu', 'Phvul.006G124100' => 'pvu', 'Phvul.007G244500' => 'pvu', 'Potri.003G074800' => 'ptr', 'Potri.004G224300' => 'ptr', 'Potri.007G019100' => 'ptr', 'Potri.015G077200' => 'ptr', 'Pp3c12_17640' => 'ppa', 'Pp3c19_21200' => 'ppa', 'Pp3c21_6760' => 'ppa', 'Pp3c3_26860' => 'ppa', 'PRCOL_00003541' => 'pco', 'Prupe.1G195400' => 'ppe', 'Prupe.4G115200' => 'ppe', 'Prupe.5G173000' => 'ppe', 'Prupe.7G162000' => 'ppe', 'Prupe.8G053900' => 'ppe', 'Prupe.8G072700' => 'ppe', 'Psat1g015120' => 'psa', 'Psat1g164400' => 'psa', 'Psat1g164640' => 'psa', 'Psat3g150240' => 'psa', 'Psat4g096320' => 'psa', 'PSO063G4759' => 'pso', 'PSO339G1229' => 'pso', 'PSO339G3237' => 'pso', 'PSO384G4181' => 'pso', 'PSO384G4824' => 'pso', 'PSO541G0283' => 'pso', 'PSO541G0845' => 'pso', 'PSO675G0077' => 'pso', 'PSO675G7370' => 'pso', 'PSO832G3715' => 'pso', 'QL06p039532' => 'qlo', 'QL07p045230' => 'qlo', 'QL08p056981' => 'qlo', 'QL10p007541' => 'qlo', 'QL10p015865' => 'qlo', 'QL11p013638' => 'qlo', 'RcHm_v2.0_Chr2g0100351' => 'rch', 'RcHm_v2.0_Chr5g0020611' => 'rch', 'RcHm_v2.0_Chr6g0269241' => 'rch', 'RcHm_v2.0_Chr7g0193501' => 'rch', 'RcHm_v2.0_Chr7g0217101' => 'rch', 'RcHm_v2.0_Chr7g0217161' => 'rch', 'Rhsim03G0068400' => 'rsi', 'Rhsim06G0063500' => 'rsi', 'Rhsim08G0093100' => 'rsi', 'Rhsim08G0172700' => 'rsi', 'Rhsim08G0172800' => 'rsi', 'Sabra01G0170400' => 'sbr', 'Sabra03G0045500' => 'sbr', 'Sabra07G0016400' => 'sbr', 'Sabra12G0058200' => 'sbr', 'Sabra15G0101900' => 'sbr', 'SalBow3G1888' => 'sbo', 'SalBow3G2897' => 'sbo', 'SalBow4G2558' => 'sbo', 'SalBow6G0603' => 'sbo', 'SalBow6G4805' => 'sbo', 'SalBow6G5516' => 'sbo', 'SalBow8G3047' => 'sbo', 'SalBow8G3377' => 'sbo', 'SalBow8G4176' => 'sbo', 'Sc01g0002240' => 'sci', 'Sc03g0003230' => 'sci', 'Sc05g0004740' => 'sci', 'Sc12g0005310' => 'sci', 'Sed0004231' => 'sed', 'Sed0005290' => 'sed', 'Sed0005933' => 'sed', 'Sed0013334' => 'sed', 'Sed0013751' => 'sed', 'Sed0024267' => 'sed', 'SEGI_08694' => 'sgi', 'SEGI_09069' => 'sgi', 'SEGI_12175' => 'sgi', 'SEGI_23469' => 'sgi', 'SEGI_36105' => 'sgi', 'SGA_v2.0_scaffold51G18801' => 'sas', 'SGA_v2.0_scaffold62G21596' => 'sas', 'SGA_v2.0_scaffold72G24071' => 'sas', 'SHI08615' => 'shi', 'SHI16975' => 'shi', 'SMO270G0043' => 'smo', 'Solyc02g031970.1' => 'sly', 'Solyc02g088760.2' => 'sly', 'Solyc02g092300.1' => 'sly', 'Solyc09g010030.3' => 'sly', 'Solyc11g071530.1' => 'sly', 'Sopen02g010230' => 'spe', 'Sopen02g033470' => 'spe', 'Sopen02g036870' => 'spe', 'Sopen09g004770' => 'spe', 'Sopen11g029220' => 'spe', 'Sp3g04990' => 'spa', 'Sp5g25310' => 'spa', 'Sp6g12180' => 'spa', 'Sp7g34080' => 'spa', 'Sp7g35310' => 'spa', 'TAR371G0150' => 'tar', 'TAR376G0630' => 'tar', 'TAR381G0864' => 'tar', 'TAR622G0652' => 'tar', 'TAR626G0967' => 'tar', 'TAR627G0190' => 'tar', 'TAR627G0865' => 'tar', 'THA.LOC104802756' => 'tha', 'THA.LOC104807473' => 'tha', 'THA.LOC104811737' => 'tha', 'THA.LOC104822304' => 'tha', 'Thecc.01G027100' => 'tca', 'Thecc.01G073200' => 'tca', 'Thecc.02G006100' => 'tca', 'Thecc.03G013100' => 'tca', 'Thhalv10019124m.g' => 'esa', 'Thhalv10021590m.g' => 'esa', 'Thhalv10026420m.g' => 'esa', 'Thhalv10026763m.g' => 'esa', 'Thhalv10027419m.g' => 'esa', 'TPR.G21534' => 'tpr', 'TPR.G28435' => 'tpr', 'TPR.G29154' => 'tpr', 'TPR.G8028' => 'tpr', 'TPR.G8034' => 'tpr', 'TWI14G1176' => 'twi', 'TWI15G0681' => 'twi', 'TWI38G0313' => 'twi', 'TWI39G0852' => 'twi', 'TWI59G0342' => 'twi', 'TWI73G1286' => 'twi', 'unitig_26.g10136' => 'ugi', 'unitig_32.g10997' => 'ugi', 'unitig_37.g12051' => 'ugi', 'unitig_899.g14636' => 'ugi', 'unitig_92.g28191' => 'ugi', 'vmacro19392' => 'vma', 'vmacro22282' => 'vma', 'VMungo0251G0891' => 'vmu', 'VMungo0540G0215' => 'vmu', 'VMungo0647G0911' => 'vmu', 'VMungo1080G1379' => 'vmu', 'Zm00001eb205850' => 'zma', 'Zm00001eb215450' => 'zma', 'Zm00001eb235930' => 'zma', 'Zm00001eb295090' => 'zma', 'Zm00001eb327950' => 'zma', 'Zm00001eb343100' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001156', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001156' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001156', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '534', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001156' ) ), 'genes' => array( 'A03p34480' => 'bna', 'A03p64230' => 'bna', 'A03p65440' => 'bna', 'A05p41960' => 'bna', 'A07p31190' => 'bna', 'A08p22720' => 'bna', 'Aa31LG4G10710' => 'aar', 'Aa31LG5G16530' => 'aar', 'Aa31LG6G13220' => 'aar', 'Aa31LG6G14560' => 'aar', 'Actinidia19220' => 'ach', 'Actinidia19323' => 'ach', 'Actinidia22420' => 'ach', 'Ah.02g110810' => 'amhyb', 'Ah.05g178980' => 'amhyb', 'Ah.15g094680' => 'amhyb', 'AL2G29480' => 'aly', 'AL3G16880' => 'aly', 'AL4G22630' => 'aly', 'AL5G12780' => 'aly', 'AL7G13110' => 'aly', 'AL7G14670' => 'aly', 'Aqoxy2G02136' => 'aox', 'Aqoxy3G04261' => 'aox', 'Aqoxy5G00599' => 'aox', 'Aqoxy6G01200' => 'aox', 'Aqoxy6G01412' => 'aox', 'Aqoxy6G01858' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5TMB2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F3RDV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U7G1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WX4FN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0ANZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVE24N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE3SS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQ0X0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF3IUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YYYQ5L' => 'arhy', 'AT1G70190' => 'ath', 'AT2G03130' => 'ath', 'AT3G06040' => 'ath', 'AT4G36420' => 'ath', 'AT4G37660' => 'ath', 'ATR0068G065' => 'atr', 'ATR0564G309' => 'atr', 'ATR0629G117' => 'atr', 'ATR0665G652' => 'atr', 'ATR0705G215' => 'atr', 'ATR0739G108' => 'atr', 'ATR0739G148' => 'atr', 'ATR0749G086' => 'atr', 'ATR0752G124' => 'atr', 'Atru.chr10.430' => 'acertr', 'Atru.chr3.1019' => 'acertr', 'Atru.chr3.2886' => 'acertr', 'Atru.chr3.729' => 'acertr', 'Atru.chr9.2482' => 'acertr', 'AUR62001367' => 'cqu', 'AUR62004556' => 'cqu', 'AUR62008204' => 'cqu', 'AUR62015145' => 'cqu', 'AUR62017607' => 'cqu', 'AUR62022672' => 'cqu', 'AUR62025583' => 'cqu', 'AUR62030957' => 'cqu', 'AUR62033575' => 'cqu', 'BcaB03g12335' => 'bca', 'BcaB03g15533' => 'bca', 'BcaB04g19220' => 'bca', 'BcaC01g00394' => 'bca', 'BcaC01g04321' => 'bca', 'BcaC05g30063' => 'bca', 'BcaC05g30064' => 'bca', 'BcaC08g45837' => 'bca', 'BcaNung02072' => 'bca', 'BcaNung02075' => 'bca', 'BcaNung02077' => 'bca', 'BolC1t00148H' => 'bol', 'BolC3t16477H' => 'bol', 'BolC3t20167H' => 'bol', 'BolC5t34781H' => 'bol', 'BolC6t38745H' => 'bol', 'BolC7t46594H' => 'bol', 'BolC7t46669H' => 'bol', 'BraA03t12625Z' => 'bra', 'BraA03t15494Z' => 'bra', 'BraA03t15596Z' => 'bra', 'BraA05t22918Z' => 'bra', 'BraA07t30752Z' => 'bra', 'BraA08t34241Z' => 'bra', 'C01p01510' => 'bna', 'C03p41940' => 'bna', 'C05p61210' => 'bna', 'C06p36240' => 'bna', 'C07p61690' => 'bna', 'C07p62540' => 'bna', 'CAN.G1075.42' => 'can', 'CAN.G1492.7' => 'can', 'CAN.G206.220' => 'can', 'CAN.G397.75' => 'can', 'CAN.G439.33' => 'can', 'CAN.G678.14' => 'can', 'CANSAT01G1841' => 'cansat', 'CANSAT01G3018' => 'cansat', 'CANSAT80G0830' => 'cansat', 'CANSAT80G1509' => 'cansat', 'CARHR063310' => 'chi', 'CARHR080540' => 'chi', 'CARHR244750' => 'chi', 'CARHR246050' => 'chi', 'Carub.0002s1688' => 'cru', 'Carub.0003s0547' => 'cru', 'Carub.0005s0196' => 'cru', 'Carub.0007s0261' => 'cru', 'Carub.0007s0389' => 'cru', 'Ca_00920_v3' => 'car', 'Ca_00925_v3' => 'car', 'Ca_03176_v3' => 'car', 'Ca_07501_v3' => 'car', 'Ca_11268_v3' => 'car', 'CBR_g2871' => 'cbr', 'Cc00_g05000' => 'ccan', 'Cc00_g05010' => 'ccan', 'Cc00_g05020' => 'ccan', 'Cc07_g10100' => 'ccan', 'Cc09_g05760' => 'ccan', 'Cc11_g12810' => 'ccan', 'CDE02G1704' => 'cde', 'CDE05G0428' => 'cde', 'Cfa000678' => 'cfa', 'Cfa004136' => 'cfa', 'Cfa019137' => 'cfa', 'Ciclev10012849m.g' => 'ccl', 'Ciclev10016633m.g' => 'ccl', 'Ciclev10026576m.g' => 'ccl', 'Ciclev10026634m.g' => 'ccl', 'CiPaw.01G004300' => 'cil', 'CiPaw.07G053000' => 'cil', 'CiPaw.09G074700' => 'cil', 'CiPaw.10G062700' => 'cil', 'CiPaw.11G025700' => 'cil', 'ClCG01G017620' => 'cla', 'ClCG01G019960' => 'cla', 'ClCG03G004220' => 'cla', 'ClCG06G015740' => 'cla', 'ClCG07G016250' => 'cla', 'COL.COLO4_11582' => 'col', 'COL.COLO4_17636' => 'col', 'COL.COLO4_22000' => 'col', 'COL.COLO4_30043' => 'col', 'COL.COLO4_30227' => 'col', 'COL.COLO4_30231' => 'col', 'Cpa.g.c45949' => 'cpa', 'Cpa.g.sc153.25' => 'cpa', 'Cpa.g.sc286.9' => 'cpa', 'Cpa.g.sc33.37' => 'cpa', 'Cpa.g.sc6.11' => 'cpa', 'Cpa.g.sc6.182' => 'cpa', 'Cre06.g293700' => 'cre', 'CsaV3_1G010160' => 'csa', 'CsaV3_3G028630' => 'csa', 'CsaV3_6G044160' => 'csa', 'CsaV3_6G046720' => 'csa', 'CSS0002792' => 'camsi', 'CSS0013566' => 'camsi', 'CSS0016934' => 'camsi', 'CSS0023118' => 'camsi', 'CSS0047861' => 'camsi', 'DCAR_000070' => 'dca', 'DCAR_001292' => 'dca', 'DCAR_004338' => 'dca', 'DCAR_024217' => 'dca', 'DCAR_025801' => 'dca', 'DCAR_025975' => 'dca', 'DCAR_026138' => 'dca', 'DCAR_030083' => 'dca', 'Dinv04043' => 'din', 'Dinv13838' => 'din', 'Dinv17478' => 'din', 'Dinv20649' => 'din', 'Dinv26936' => 'din', 'Dinv40032' => 'din', 'Duzib132G0565' => 'dzi', 'Duzib147G0140' => 'dzi', 'Duzib147G0485' => 'dzi', 'Duzib187G1810' => 'dzi', 'Duzib205G0148' => 'dzi', 'Duzib248G0830' => 'dzi', 'Duzib264G0887' => 'dzi', 'Duzib264G0950' => 'dzi', 'ECA232G2449' => 'eca', 'ECA234G3166' => 'eca', 'ECA238G1178' => 'eca', 'ECA246G0236' => 'eca', 'ECA247G0150' => 'eca', 'EL10Ac1g00191' => 'bvu', 'EL10Ac3g06332' => 'bvu', 'EL10Ac5g10741' => 'bvu', 'EL10Ac9g22855' => 'bvu', 'Eucgr.D02092' => 'egr', 'Eucgr.E04306' => 'egr', 'Eucgr.H02311' => 'egr', 'FAN04G0454' => 'fan', 'FAN04G1980' => 'fan', 'FAN08G0627' => 'fan', 'FAN08G3317' => 'fan', 'FAN11G3550' => 'fan', 'FAN13G2117' => 'fan', 'FAN13G3194' => 'fan', 'FAN15G1597' => 'fan', 'FAN16G2237' => 'fan', 'FAN18G0573' => 'fan', 'FAN18G0963' => 'fan', 'FAN18G2375' => 'fan', 'FAN19G0589' => 'fan', 'FAN19G1670' => 'fan', 'FAN20G0933' => 'fan', 'FAN21G1329' => 'fan', 'FAN23G1548' => 'fan', 'FAN24G2926' => 'fan', 'FAN24G2997' => 'fan', 'FAN25G1424' => 'fan', 'FAN26G1210' => 'fan', 'FAN28G0357' => 'fan', 'FAN28G1657' => 'fan', 'FAN28G2681' => 'fan', 'FvH4_1g12480' => 'fve', 'FvH4_2g11030' => 'fve', 'FvH4_3g12640' => 'fve', 'FvH4_5g04711' => 'fve', 'FvH4_5g05340' => 'fve', 'FvH4_5g26350' => 'fve', 'Glyma.02G052600' => 'gma', 'Glyma.08G164000' => 'gma', 'Glyma.09G029000' => 'gma', 'Glyma.13G077100' => 'gma', 'Glyma.15G134800' => 'gma', 'Glyma.15G263200' => 'gma', 'Glyma.20G052800' => 'gma', 'Gohir.A03G217800' => 'ghi', 'Gohir.A10G089600' => 'ghi', 'Gohir.A11G181200' => 'ghi', 'Gohir.A12G274300' => 'ghi', 'Gohir.D02G239800' => 'ghi', 'Gohir.D10G098500' => 'ghi', 'Gohir.D10G167100' => 'ghi', 'Gohir.D11G187700' => 'ghi', 'Gohir.D12G275000' => 'ghi', 'Gorai.005G268200' => 'gra', 'Gorai.007G199600' => 'gra', 'Gorai.008G295500' => 'gra', 'Gorai.011G108200' => 'gra', 'Gorai.011G186400' => 'gra', 'GSVIVG01007737001' => 'vvi', 'GSVIVG01012121001' => 'vvi', 'HanXRQChr05g0156251' => 'han', 'HanXRQChr07g0190371' => 'han', 'HanXRQChr07g0196421' => 'han', 'HanXRQChr08g0231921' => 'han', 'HanXRQChr12g0355891' => 'han', 'HanXRQChr14g0445281' => 'han', 'HanXRQChr16g0522361' => 'han', 'Haze_03841' => 'cav', 'Haze_06140' => 'cav', 'Haze_07504' => 'cav', 'Haze_15278' => 'cav', 'Haze_26791' => 'cav', 'Hma1.2p1_0176F.1_g077370' => 'hma', 'Hma1.2p1_0327F.1_g126500' => 'hma', 'Hma1.2p1_0701F.1_g205880' => 'hma', 'Hma1.2p1_0852F.1_g228590' => 'hma', 'Hma1.2p1_0913F.1_g235980' => 'hma', 'Hma1.2p1_2409F.1_g321500' => 'hma', 'HPP92_008592' => 'vpl', 'HPP92_021567' => 'vpl', 'HPP92_027134' => 'vpl', 'HPP92_027258' => 'vpl', 'Hund08877' => 'sun', 'Lalb_Chr01g0015551' => 'lal', 'Lalb_Chr09g0333401' => 'lal', 'Lalb_Chr16g0391001' => 'lal', 'Lalb_Chr18g0058261' => 'lal', 'Lalb_Chr18g0058311' => 'lal', 'Lalb_Chr25g0284381' => 'lal', 'Lj1P1147T19' => 'lonja', 'Lj3g0004919' => 'lja', 'Lj4g0026319' => 'lja', 'Lj4P210T17' => 'lonja', 'Lj5E124G2' => 'lonja', 'Lj5P124T52' => 'lonja', 'Lj6g0004694' => 'lja', 'Lj6g0014938' => 'lja', 'Lj7P99T29' => 'lonja', 'Lju470C11T7' => 'lonja', 'Lsat_1_v5_gn_2_78060' => 'lsa', 'Lsat_1_v5_gn_4_161541' => 'lsa', 'Lsat_1_v5_gn_5_14700' => 'lsa', 'Lsat_1_v5_gn_5_99221' => 'lsa', 'Lsat_1_v5_gn_8_95040' => 'lsa', 'Manes.01G140300' => 'mes', 'Manes.02G098500' => 'mes', 'Manes.03G074200' => 'mes', 'Manes.06G105200' => 'mes', 'Manes.13G111200' => 'mes', 'Manes.14G065500' => 'mes', 'Mapoly0065s0065' => 'mpo', 'MBI02_g37836_MAGBIO' => 'mbi', 'MBI05_g28544_MAGBIO' => 'mbi', 'MBI10_g06740_MAGBIO' => 'mbi', 'MBI11_g32385_MAGBIO' => 'mbi', 'MBI13_g20251_MAGBIO' => 'mbi', 'MCO03G603' => 'mco', 'MCO16G455' => 'mco', 'MD02G1138800' => 'mdo', 'MD02G1139200' => 'mdo', 'MD04G1041700' => 'mdo', 'MD05G1040200' => 'mdo', 'MD05G1249000' => 'mdo', 'MD06G1173500' => 'mdo', 'MD10G1046200' => 'mdo', 'MD10G1229600' => 'mdo', 'MD14G1180000' => 'mdo', 'MD15G1252100' => 'mdo', 'Medtr2g031760' => 'mtr', 'Medtr2g031960' => 'mtr', 'Medtr2g064300' => 'mtr', 'Medtr7g053520' => 'mtr', 'Medtr8g076780' => 'mtr', 'MELO3C002405.2' => 'cme', 'MELO3C003920.2' => 'cme', 'MELO3C007639.2' => 'cme', 'MELO3C007869.2' => 'cme', 'MELO3C011871.2' => 'cme', 'MELO3C034168.2' => 'cme', 'Migut.D01470' => 'egut', 'Migut.H00300' => 'egut', 'Migut.H02508' => 'egut', 'Migut.N00989' => 'egut', 'Migut.N00990' => 'egut', 'Migut.N01934' => 'egut', 'MSTRG.17770' => 'ama', 'MSTRG.23261' => 'ama', 'MSTRG.7600' => 'ama', 'Nitab4.5_0000073g0570' => 'nta', 'Nitab4.5_0000138g0090' => 'nta', 'Nitab4.5_0000142g0110' => 'nta', 'Nitab4.5_0000723g0100' => 'nta', 'Nitab4.5_0001875g0090' => 'nta', 'Nitab4.5_0002015g0010' => 'nta', 'Nitab4.5_0004025g0030' => 'nta', 'Nitab4.5_0004708g0040' => 'nta', 'Nitab4.5_0005023g0040' => 'nta', 'Nitab4.5_0008618g0010' => 'nta', 'Nn4g22755' => 'nnu', 'Nn4g24689' => 'nnu', 'Nn5g29714' => 'nnu', 'Nn5g30607' => 'nnu', 'Oeu002030.1' => 'oeu', 'Oeu011985.1' => 'oeu', 'Oeu018077.1' => 'oeu', 'Oeu018233.1' => 'oeu', 'Oeu032424.1' => 'oeu', 'Oeu056050.1' => 'oeu', 'Oeu058940.1' => 'oeu', 'Os02g0198900' => 'osa', 'Os03g0734400' => 'osa', 'Os05g0554100' => 'osa', 'Os07g0626100' => 'osa', 'Peaxi162Scf00047g02423' => 'pax', 'Peaxi162Scf00198g00103' => 'pax', 'Peaxi162Scf00241g10022' => 'pax', 'Peaxi162Scf00548g00057' => 'pax', 'Peaxi162Scf00556g00055' => 'pax', 'PGR042G0243' => 'pgr', 'PGR102G0269' => 'pgr', 'PGR102G1158' => 'pgr', 'PGR119G0889' => 'pgr', 'PGR119G1972' => 'pgr', 'PGSC0003DMG400001451' => 'stu', 'PGSC0003DMG400008867' => 'stu', 'PGSC0003DMG400014931' => 'stu', 'PGSC0003DMG400018715' => 'stu', 'PGSC0003DMG400021441' => 'stu', 'Phvul.002G273000' => 'pvu', 'Phvul.003G257500' => 'pvu', 'Phvul.005G074800' => 'pvu', 'Phvul.006G021600' => 'pvu', 'Phvul.006G124100' => 'pvu', 'Phvul.007G244500' => 'pvu', 'Potri.003G074800' => 'ptr', 'Potri.004G224300' => 'ptr', 'Potri.007G019100' => 'ptr', 'Potri.015G077200' => 'ptr', 'Pp3c12_17640' => 'ppa', 'Pp3c19_21200' => 'ppa', 'Pp3c21_6760' => 'ppa', 'Pp3c3_26860' => 'ppa', 'PRCOL_00003541' => 'pco', 'Prupe.1G195400' => 'ppe', 'Prupe.4G115200' => 'ppe', 'Prupe.5G173000' => 'ppe', 'Prupe.7G162000' => 'ppe', 'Prupe.8G053900' => 'ppe', 'Prupe.8G072700' => 'ppe', 'Psat1g015120' => 'psa', 'Psat1g164400' => 'psa', 'Psat1g164640' => 'psa', 'Psat3g150240' => 'psa', 'Psat4g096320' => 'psa', 'PSO063G4759' => 'pso', 'PSO339G1229' => 'pso', 'PSO339G3237' => 'pso', 'PSO384G4181' => 'pso', 'PSO384G4824' => 'pso', 'PSO541G0283' => 'pso', 'PSO541G0845' => 'pso', 'PSO675G0077' => 'pso', 'PSO675G7370' => 'pso', 'PSO832G3715' => 'pso', 'QL06p039532' => 'qlo', 'QL07p045230' => 'qlo', 'QL08p056981' => 'qlo', 'QL10p007541' => 'qlo', 'QL10p015865' => 'qlo', 'QL11p013638' => 'qlo', 'RcHm_v2.0_Chr2g0100351' => 'rch', 'RcHm_v2.0_Chr5g0020611' => 'rch', 'RcHm_v2.0_Chr6g0269241' => 'rch', 'RcHm_v2.0_Chr7g0193501' => 'rch', 'RcHm_v2.0_Chr7g0217101' => 'rch', 'RcHm_v2.0_Chr7g0217161' => 'rch', 'Rhsim03G0068400' => 'rsi', 'Rhsim06G0063500' => 'rsi', 'Rhsim08G0093100' => 'rsi', 'Rhsim08G0172700' => 'rsi', 'Rhsim08G0172800' => 'rsi', 'Sabra01G0170400' => 'sbr', 'Sabra03G0045500' => 'sbr', 'Sabra07G0016400' => 'sbr', 'Sabra12G0058200' => 'sbr', 'Sabra15G0101900' => 'sbr', 'SalBow3G1888' => 'sbo', 'SalBow3G2897' => 'sbo', 'SalBow4G2558' => 'sbo', 'SalBow6G0603' => 'sbo', 'SalBow6G4805' => 'sbo', 'SalBow6G5516' => 'sbo', 'SalBow8G3047' => 'sbo', 'SalBow8G3377' => 'sbo', 'SalBow8G4176' => 'sbo', 'Sc01g0002240' => 'sci', 'Sc03g0003230' => 'sci', 'Sc05g0004740' => 'sci', 'Sc12g0005310' => 'sci', 'Sed0004231' => 'sed', 'Sed0005290' => 'sed', 'Sed0005933' => 'sed', 'Sed0013334' => 'sed', 'Sed0013751' => 'sed', 'Sed0024267' => 'sed', 'SEGI_08694' => 'sgi', 'SEGI_09069' => 'sgi', 'SEGI_12175' => 'sgi', 'SEGI_23469' => 'sgi', 'SEGI_36105' => 'sgi', 'SGA_v2.0_scaffold51G18801' => 'sas', 'SGA_v2.0_scaffold62G21596' => 'sas', 'SGA_v2.0_scaffold72G24071' => 'sas', 'SHI08615' => 'shi', 'SHI16975' => 'shi', 'SMO270G0043' => 'smo', 'Solyc02g031970.1' => 'sly', 'Solyc02g088760.2' => 'sly', 'Solyc02g092300.1' => 'sly', 'Solyc09g010030.3' => 'sly', 'Solyc11g071530.1' => 'sly', 'Sopen02g010230' => 'spe', 'Sopen02g033470' => 'spe', 'Sopen02g036870' => 'spe', 'Sopen09g004770' => 'spe', 'Sopen11g029220' => 'spe', 'Sp3g04990' => 'spa', 'Sp5g25310' => 'spa', 'Sp6g12180' => 'spa', 'Sp7g34080' => 'spa', 'Sp7g35310' => 'spa', 'TAR371G0150' => 'tar', 'TAR376G0630' => 'tar', 'TAR381G0864' => 'tar', 'TAR622G0652' => 'tar', 'TAR626G0967' => 'tar', 'TAR627G0190' => 'tar', 'TAR627G0865' => 'tar', 'THA.LOC104802756' => 'tha', 'THA.LOC104807473' => 'tha', 'THA.LOC104811737' => 'tha', 'THA.LOC104822304' => 'tha', 'Thecc.01G027100' => 'tca', 'Thecc.01G073200' => 'tca', 'Thecc.02G006100' => 'tca', 'Thecc.03G013100' => 'tca', 'Thhalv10019124m.g' => 'esa', 'Thhalv10021590m.g' => 'esa', 'Thhalv10026420m.g' => 'esa', 'Thhalv10026763m.g' => 'esa', 'Thhalv10027419m.g' => 'esa', 'TPR.G21534' => 'tpr', 'TPR.G28435' => 'tpr', 'TPR.G29154' => 'tpr', 'TPR.G8028' => 'tpr', 'TPR.G8034' => 'tpr', 'TWI14G1176' => 'twi', 'TWI15G0681' => 'twi', 'TWI38G0313' => 'twi', 'TWI39G0852' => 'twi', 'TWI59G0342' => 'twi', 'TWI73G1286' => 'twi', 'unitig_26.g10136' => 'ugi', 'unitig_32.g10997' => 'ugi', 'unitig_37.g12051' => 'ugi', 'unitig_899.g14636' => 'ugi', 'unitig_92.g28191' => 'ugi', 'vmacro19392' => 'vma', 'vmacro22282' => 'vma', 'VMungo0251G0891' => 'vmu', 'VMungo0540G0215' => 'vmu', 'VMungo0647G0911' => 'vmu', 'VMungo1080G1379' => 'vmu', 'Zm00001eb205850' => 'zma', 'Zm00001eb215450' => 'zma', 'Zm00001eb235930' => 'zma', 'Zm00001eb295090' => 'zma', 'Zm00001eb327950' => 'zma', 'Zm00001eb343100' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001156' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001156' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001156' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001156' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001156', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '534', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p34480' => 'bna', 'A03p64230' => 'bna', 'A03p65440' => 'bna', 'A05p41960' => 'bna', 'A07p31190' => 'bna', 'A08p22720' => 'bna', 'Aa31LG4G10710' => 'aar', 'Aa31LG5G16530' => 'aar', 'Aa31LG6G13220' => 'aar', 'Aa31LG6G14560' => 'aar', 'Actinidia19220' => 'ach', 'Actinidia19323' => 'ach', 'Actinidia22420' => 'ach', 'Ah.02g110810' => 'amhyb', 'Ah.05g178980' => 'amhyb', 'Ah.15g094680' => 'amhyb', 'AL2G29480' => 'aly', 'AL3G16880' => 'aly', 'AL4G22630' => 'aly', 'AL5G12780' => 'aly', 'AL7G13110' => 'aly', 'AL7G14670' => 'aly', 'Aqoxy2G02136' => 'aox', 'Aqoxy3G04261' => 'aox', 'Aqoxy5G00599' => 'aox', 'Aqoxy6G01200' => 'aox', 'Aqoxy6G01412' => 'aox', 'Aqoxy6G01858' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5TMB2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F3RDV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U7G1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WX4FN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0ANZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVE24N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE3SS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQ0X0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF3IUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YYYQ5L' => 'arhy', 'AT1G70190' => 'ath', 'AT2G03130' => 'ath', 'AT3G06040' => 'ath', 'AT4G36420' => 'ath', 'AT4G37660' => 'ath', 'ATR0068G065' => 'atr', 'ATR0564G309' => 'atr', 'ATR0629G117' => 'atr', 'ATR0665G652' => 'atr', 'ATR0705G215' => 'atr', 'ATR0739G108' => 'atr', 'ATR0739G148' => 'atr', 'ATR0749G086' => 'atr', 'ATR0752G124' => 'atr', 'Atru.chr10.430' => 'acertr', 'Atru.chr3.1019' => 'acertr', 'Atru.chr3.2886' => 'acertr', 'Atru.chr3.729' => 'acertr', 'Atru.chr9.2482' => 'acertr', 'AUR62001367' => 'cqu', 'AUR62004556' => 'cqu', 'AUR62008204' => 'cqu', 'AUR62015145' => 'cqu', 'AUR62017607' => 'cqu', 'AUR62022672' => 'cqu', 'AUR62025583' => 'cqu', 'AUR62030957' => 'cqu', 'AUR62033575' => 'cqu', 'BcaB03g12335' => 'bca', 'BcaB03g15533' => 'bca', 'BcaB04g19220' => 'bca', 'BcaC01g00394' => 'bca', 'BcaC01g04321' => 'bca', 'BcaC05g30063' => 'bca', 'BcaC05g30064' => 'bca', 'BcaC08g45837' => 'bca', 'BcaNung02072' => 'bca', 'BcaNung02075' => 'bca', 'BcaNung02077' => 'bca', 'BolC1t00148H' => 'bol', 'BolC3t16477H' => 'bol', 'BolC3t20167H' => 'bol', 'BolC5t34781H' => 'bol', 'BolC6t38745H' => 'bol', 'BolC7t46594H' => 'bol', 'BolC7t46669H' => 'bol', 'BraA03t12625Z' => 'bra', 'BraA03t15494Z' => 'bra', 'BraA03t15596Z' => 'bra', 'BraA05t22918Z' => 'bra', 'BraA07t30752Z' => 'bra', 'BraA08t34241Z' => 'bra', 'C01p01510' => 'bna', 'C03p41940' => 'bna', 'C05p61210' => 'bna', 'C06p36240' => 'bna', 'C07p61690' => 'bna', 'C07p62540' => 'bna', 'CAN.G1075.42' => 'can', 'CAN.G1492.7' => 'can', 'CAN.G206.220' => 'can', 'CAN.G397.75' => 'can', 'CAN.G439.33' => 'can', 'CAN.G678.14' => 'can', 'CANSAT01G1841' => 'cansat', 'CANSAT01G3018' => 'cansat', 'CANSAT80G0830' => 'cansat', 'CANSAT80G1509' => 'cansat', 'CARHR063310' => 'chi', 'CARHR080540' => 'chi', 'CARHR244750' => 'chi', 'CARHR246050' => 'chi', 'Carub.0002s1688' => 'cru', 'Carub.0003s0547' => 'cru', 'Carub.0005s0196' => 'cru', 'Carub.0007s0261' => 'cru', 'Carub.0007s0389' => 'cru', 'Ca_00920_v3' => 'car', 'Ca_00925_v3' => 'car', 'Ca_03176_v3' => 'car', 'Ca_07501_v3' => 'car', 'Ca_11268_v3' => 'car', 'CBR_g2871' => 'cbr', 'Cc00_g05000' => 'ccan', 'Cc00_g05010' => 'ccan', 'Cc00_g05020' => 'ccan', 'Cc07_g10100' => 'ccan', 'Cc09_g05760' => 'ccan', 'Cc11_g12810' => 'ccan', 'CDE02G1704' => 'cde', 'CDE05G0428' => 'cde', 'Cfa000678' => 'cfa', 'Cfa004136' => 'cfa', 'Cfa019137' => 'cfa', 'Ciclev10012849m.g' => 'ccl', 'Ciclev10016633m.g' => 'ccl', 'Ciclev10026576m.g' => 'ccl', 'Ciclev10026634m.g' => 'ccl', 'CiPaw.01G004300' => 'cil', 'CiPaw.07G053000' => 'cil', 'CiPaw.09G074700' => 'cil', 'CiPaw.10G062700' => 'cil', 'CiPaw.11G025700' => 'cil', 'ClCG01G017620' => 'cla', 'ClCG01G019960' => 'cla', 'ClCG03G004220' => 'cla', 'ClCG06G015740' => 'cla', 'ClCG07G016250' => 'cla', 'COL.COLO4_11582' => 'col', 'COL.COLO4_17636' => 'col', 'COL.COLO4_22000' => 'col', 'COL.COLO4_30043' => 'col', 'COL.COLO4_30227' => 'col', 'COL.COLO4_30231' => 'col', 'Cpa.g.c45949' => 'cpa', 'Cpa.g.sc153.25' => 'cpa', 'Cpa.g.sc286.9' => 'cpa', 'Cpa.g.sc33.37' => 'cpa', 'Cpa.g.sc6.11' => 'cpa', 'Cpa.g.sc6.182' => 'cpa', 'Cre06.g293700' => 'cre', 'CsaV3_1G010160' => 'csa', 'CsaV3_3G028630' => 'csa', 'CsaV3_6G044160' => 'csa', 'CsaV3_6G046720' => 'csa', 'CSS0002792' => 'camsi', 'CSS0013566' => 'camsi', 'CSS0016934' => 'camsi', 'CSS0023118' => 'camsi', 'CSS0047861' => 'camsi', 'DCAR_000070' => 'dca', 'DCAR_001292' => 'dca', 'DCAR_004338' => 'dca', 'DCAR_024217' => 'dca', 'DCAR_025801' => 'dca', 'DCAR_025975' => 'dca', 'DCAR_026138' => 'dca', 'DCAR_030083' => 'dca', 'Dinv04043' => 'din', 'Dinv13838' => 'din', 'Dinv17478' => 'din', 'Dinv20649' => 'din', 'Dinv26936' => 'din', 'Dinv40032' => 'din', 'Duzib132G0565' => 'dzi', 'Duzib147G0140' => 'dzi', 'Duzib147G0485' => 'dzi', 'Duzib187G1810' => 'dzi', 'Duzib205G0148' => 'dzi', 'Duzib248G0830' => 'dzi', 'Duzib264G0887' => 'dzi', 'Duzib264G0950' => 'dzi', 'ECA232G2449' => 'eca', 'ECA234G3166' => 'eca', 'ECA238G1178' => 'eca', 'ECA246G0236' => 'eca', 'ECA247G0150' => 'eca', 'EL10Ac1g00191' => 'bvu', 'EL10Ac3g06332' => 'bvu', 'EL10Ac5g10741' => 'bvu', 'EL10Ac9g22855' => 'bvu', 'Eucgr.D02092' => 'egr', 'Eucgr.E04306' => 'egr', 'Eucgr.H02311' => 'egr', 'FAN04G0454' => 'fan', 'FAN04G1980' => 'fan', 'FAN08G0627' => 'fan', 'FAN08G3317' => 'fan', 'FAN11G3550' => 'fan', 'FAN13G2117' => 'fan', 'FAN13G3194' => 'fan', 'FAN15G1597' => 'fan', 'FAN16G2237' => 'fan', 'FAN18G0573' => 'fan', 'FAN18G0963' => 'fan', 'FAN18G2375' => 'fan', 'FAN19G0589' => 'fan', 'FAN19G1670' => 'fan', 'FAN20G0933' => 'fan', 'FAN21G1329' => 'fan', 'FAN23G1548' => 'fan', 'FAN24G2926' => 'fan', 'FAN24G2997' => 'fan', 'FAN25G1424' => 'fan', 'FAN26G1210' => 'fan', 'FAN28G0357' => 'fan', 'FAN28G1657' => 'fan', 'FAN28G2681' => 'fan', 'FvH4_1g12480' => 'fve', 'FvH4_2g11030' => 'fve', 'FvH4_3g12640' => 'fve', 'FvH4_5g04711' => 'fve', 'FvH4_5g05340' => 'fve', 'FvH4_5g26350' => 'fve', 'Glyma.02G052600' => 'gma', 'Glyma.08G164000' => 'gma', 'Glyma.09G029000' => 'gma', 'Glyma.13G077100' => 'gma', 'Glyma.15G134800' => 'gma', 'Glyma.15G263200' => 'gma', 'Glyma.20G052800' => 'gma', 'Gohir.A03G217800' => 'ghi', 'Gohir.A10G089600' => 'ghi', 'Gohir.A11G181200' => 'ghi', 'Gohir.A12G274300' => 'ghi', 'Gohir.D02G239800' => 'ghi', 'Gohir.D10G098500' => 'ghi', 'Gohir.D10G167100' => 'ghi', 'Gohir.D11G187700' => 'ghi', 'Gohir.D12G275000' => 'ghi', 'Gorai.005G268200' => 'gra', 'Gorai.007G199600' => 'gra', 'Gorai.008G295500' => 'gra', 'Gorai.011G108200' => 'gra', 'Gorai.011G186400' => 'gra', 'GSVIVG01007737001' => 'vvi', 'GSVIVG01012121001' => 'vvi', 'HanXRQChr05g0156251' => 'han', 'HanXRQChr07g0190371' => 'han', 'HanXRQChr07g0196421' => 'han', 'HanXRQChr08g0231921' => 'han', 'HanXRQChr12g0355891' => 'han', 'HanXRQChr14g0445281' => 'han', 'HanXRQChr16g0522361' => 'han', 'Haze_03841' => 'cav', 'Haze_06140' => 'cav', 'Haze_07504' => 'cav', 'Haze_15278' => 'cav', 'Haze_26791' => 'cav', 'Hma1.2p1_0176F.1_g077370' => 'hma', 'Hma1.2p1_0327F.1_g126500' => 'hma', 'Hma1.2p1_0701F.1_g205880' => 'hma', 'Hma1.2p1_0852F.1_g228590' => 'hma', 'Hma1.2p1_0913F.1_g235980' => 'hma', 'Hma1.2p1_2409F.1_g321500' => 'hma', 'HPP92_008592' => 'vpl', 'HPP92_021567' => 'vpl', 'HPP92_027134' => 'vpl', 'HPP92_027258' => 'vpl', 'Hund08877' => 'sun', 'Lalb_Chr01g0015551' => 'lal', 'Lalb_Chr09g0333401' => 'lal', 'Lalb_Chr16g0391001' => 'lal', 'Lalb_Chr18g0058261' => 'lal', 'Lalb_Chr18g0058311' => 'lal', 'Lalb_Chr25g0284381' => 'lal', 'Lj1P1147T19' => 'lonja', 'Lj3g0004919' => 'lja', 'Lj4g0026319' => 'lja', 'Lj4P210T17' => 'lonja', 'Lj5E124G2' => 'lonja', 'Lj5P124T52' => 'lonja', 'Lj6g0004694' => 'lja', 'Lj6g0014938' => 'lja', 'Lj7P99T29' => 'lonja', 'Lju470C11T7' => 'lonja', 'Lsat_1_v5_gn_2_78060' => 'lsa', 'Lsat_1_v5_gn_4_161541' => 'lsa', 'Lsat_1_v5_gn_5_14700' => 'lsa', 'Lsat_1_v5_gn_5_99221' => 'lsa', 'Lsat_1_v5_gn_8_95040' => 'lsa', 'Manes.01G140300' => 'mes', 'Manes.02G098500' => 'mes', 'Manes.03G074200' => 'mes', 'Manes.06G105200' => 'mes', 'Manes.13G111200' => 'mes', 'Manes.14G065500' => 'mes', 'Mapoly0065s0065' => 'mpo', 'MBI02_g37836_MAGBIO' => 'mbi', 'MBI05_g28544_MAGBIO' => 'mbi', 'MBI10_g06740_MAGBIO' => 'mbi', 'MBI11_g32385_MAGBIO' => 'mbi', 'MBI13_g20251_MAGBIO' => 'mbi', 'MCO03G603' => 'mco', 'MCO16G455' => 'mco', 'MD02G1138800' => 'mdo', 'MD02G1139200' => 'mdo', 'MD04G1041700' => 'mdo', 'MD05G1040200' => 'mdo', 'MD05G1249000' => 'mdo', 'MD06G1173500' => 'mdo', 'MD10G1046200' => 'mdo', 'MD10G1229600' => 'mdo', 'MD14G1180000' => 'mdo', 'MD15G1252100' => 'mdo', 'Medtr2g031760' => 'mtr', 'Medtr2g031960' => 'mtr', 'Medtr2g064300' => 'mtr', 'Medtr7g053520' => 'mtr', 'Medtr8g076780' => 'mtr', 'MELO3C002405.2' => 'cme', 'MELO3C003920.2' => 'cme', 'MELO3C007639.2' => 'cme', 'MELO3C007869.2' => 'cme', 'MELO3C011871.2' => 'cme', 'MELO3C034168.2' => 'cme', 'Migut.D01470' => 'egut', 'Migut.H00300' => 'egut', 'Migut.H02508' => 'egut', 'Migut.N00989' => 'egut', 'Migut.N00990' => 'egut', 'Migut.N01934' => 'egut', 'MSTRG.17770' => 'ama', 'MSTRG.23261' => 'ama', 'MSTRG.7600' => 'ama', 'Nitab4.5_0000073g0570' => 'nta', 'Nitab4.5_0000138g0090' => 'nta', 'Nitab4.5_0000142g0110' => 'nta', 'Nitab4.5_0000723g0100' => 'nta', 'Nitab4.5_0001875g0090' => 'nta', 'Nitab4.5_0002015g0010' => 'nta', 'Nitab4.5_0004025g0030' => 'nta', 'Nitab4.5_0004708g0040' => 'nta', 'Nitab4.5_0005023g0040' => 'nta', 'Nitab4.5_0008618g0010' => 'nta', 'Nn4g22755' => 'nnu', 'Nn4g24689' => 'nnu', 'Nn5g29714' => 'nnu', 'Nn5g30607' => 'nnu', 'Oeu002030.1' => 'oeu', 'Oeu011985.1' => 'oeu', 'Oeu018077.1' => 'oeu', 'Oeu018233.1' => 'oeu', 'Oeu032424.1' => 'oeu', 'Oeu056050.1' => 'oeu', 'Oeu058940.1' => 'oeu', 'Os02g0198900' => 'osa', 'Os03g0734400' => 'osa', 'Os05g0554100' => 'osa', 'Os07g0626100' => 'osa', 'Peaxi162Scf00047g02423' => 'pax', 'Peaxi162Scf00198g00103' => 'pax', 'Peaxi162Scf00241g10022' => 'pax', 'Peaxi162Scf00548g00057' => 'pax', 'Peaxi162Scf00556g00055' => 'pax', 'PGR042G0243' => 'pgr', 'PGR102G0269' => 'pgr', 'PGR102G1158' => 'pgr', 'PGR119G0889' => 'pgr', 'PGR119G1972' => 'pgr', 'PGSC0003DMG400001451' => 'stu', 'PGSC0003DMG400008867' => 'stu', 'PGSC0003DMG400014931' => 'stu', 'PGSC0003DMG400018715' => 'stu', 'PGSC0003DMG400021441' => 'stu', 'Phvul.002G273000' => 'pvu', 'Phvul.003G257500' => 'pvu', 'Phvul.005G074800' => 'pvu', 'Phvul.006G021600' => 'pvu', 'Phvul.006G124100' => 'pvu', 'Phvul.007G244500' => 'pvu', 'Potri.003G074800' => 'ptr', 'Potri.004G224300' => 'ptr', 'Potri.007G019100' => 'ptr', 'Potri.015G077200' => 'ptr', 'Pp3c12_17640' => 'ppa', 'Pp3c19_21200' => 'ppa', 'Pp3c21_6760' => 'ppa', 'Pp3c3_26860' => 'ppa', 'PRCOL_00003541' => 'pco', 'Prupe.1G195400' => 'ppe', 'Prupe.4G115200' => 'ppe', 'Prupe.5G173000' => 'ppe', 'Prupe.7G162000' => 'ppe', 'Prupe.8G053900' => 'ppe', 'Prupe.8G072700' => 'ppe', 'Psat1g015120' => 'psa', 'Psat1g164400' => 'psa', 'Psat1g164640' => 'psa', 'Psat3g150240' => 'psa', 'Psat4g096320' => 'psa', 'PSO063G4759' => 'pso', 'PSO339G1229' => 'pso', 'PSO339G3237' => 'pso', 'PSO384G4181' => 'pso', 'PSO384G4824' => 'pso', 'PSO541G0283' => 'pso', 'PSO541G0845' => 'pso', 'PSO675G0077' => 'pso', 'PSO675G7370' => 'pso', 'PSO832G3715' => 'pso', 'QL06p039532' => 'qlo', 'QL07p045230' => 'qlo', 'QL08p056981' => 'qlo', 'QL10p007541' => 'qlo', 'QL10p015865' => 'qlo', 'QL11p013638' => 'qlo', 'RcHm_v2.0_Chr2g0100351' => 'rch', 'RcHm_v2.0_Chr5g0020611' => 'rch', 'RcHm_v2.0_Chr6g0269241' => 'rch', 'RcHm_v2.0_Chr7g0193501' => 'rch', 'RcHm_v2.0_Chr7g0217101' => 'rch', 'RcHm_v2.0_Chr7g0217161' => 'rch', 'Rhsim03G0068400' => 'rsi', 'Rhsim06G0063500' => 'rsi', 'Rhsim08G0093100' => 'rsi', 'Rhsim08G0172700' => 'rsi', 'Rhsim08G0172800' => 'rsi', 'Sabra01G0170400' => 'sbr', 'Sabra03G0045500' => 'sbr', 'Sabra07G0016400' => 'sbr', 'Sabra12G0058200' => 'sbr', 'Sabra15G0101900' => 'sbr', 'SalBow3G1888' => 'sbo', 'SalBow3G2897' => 'sbo', 'SalBow4G2558' => 'sbo', 'SalBow6G0603' => 'sbo', 'SalBow6G4805' => 'sbo', 'SalBow6G5516' => 'sbo', 'SalBow8G3047' => 'sbo', 'SalBow8G3377' => 'sbo', 'SalBow8G4176' => 'sbo', 'Sc01g0002240' => 'sci', 'Sc03g0003230' => 'sci', 'Sc05g0004740' => 'sci', 'Sc12g0005310' => 'sci', 'Sed0004231' => 'sed', 'Sed0005290' => 'sed', 'Sed0005933' => 'sed', 'Sed0013334' => 'sed', 'Sed0013751' => 'sed', 'Sed0024267' => 'sed', 'SEGI_08694' => 'sgi', 'SEGI_09069' => 'sgi', 'SEGI_12175' => 'sgi', 'SEGI_23469' => 'sgi', 'SEGI_36105' => 'sgi', 'SGA_v2.0_scaffold51G18801' => 'sas', 'SGA_v2.0_scaffold62G21596' => 'sas', 'SGA_v2.0_scaffold72G24071' => 'sas', 'SHI08615' => 'shi', 'SHI16975' => 'shi', 'SMO270G0043' => 'smo', 'Solyc02g031970.1' => 'sly', 'Solyc02g088760.2' => 'sly', 'Solyc02g092300.1' => 'sly', 'Solyc09g010030.3' => 'sly', 'Solyc11g071530.1' => 'sly', 'Sopen02g010230' => 'spe', 'Sopen02g033470' => 'spe', 'Sopen02g036870' => 'spe', 'Sopen09g004770' => 'spe', 'Sopen11g029220' => 'spe', 'Sp3g04990' => 'spa', 'Sp5g25310' => 'spa', 'Sp6g12180' => 'spa', 'Sp7g34080' => 'spa', 'Sp7g35310' => 'spa', 'TAR371G0150' => 'tar', 'TAR376G0630' => 'tar', 'TAR381G0864' => 'tar', 'TAR622G0652' => 'tar', 'TAR626G0967' => 'tar', 'TAR627G0190' => 'tar', 'TAR627G0865' => 'tar', 'THA.LOC104802756' => 'tha', 'THA.LOC104807473' => 'tha', 'THA.LOC104811737' => 'tha', 'THA.LOC104822304' => 'tha', 'Thecc.01G027100' => 'tca', 'Thecc.01G073200' => 'tca', 'Thecc.02G006100' => 'tca', 'Thecc.03G013100' => 'tca', 'Thhalv10019124m.g' => 'esa', 'Thhalv10021590m.g' => 'esa', 'Thhalv10026420m.g' => 'esa', 'Thhalv10026763m.g' => 'esa', 'Thhalv10027419m.g' => 'esa', 'TPR.G21534' => 'tpr', 'TPR.G28435' => 'tpr', 'TPR.G29154' => 'tpr', 'TPR.G8028' => 'tpr', 'TPR.G8034' => 'tpr', 'TWI14G1176' => 'twi', 'TWI15G0681' => 'twi', 'TWI38G0313' => 'twi', 'TWI39G0852' => 'twi', 'TWI59G0342' => 'twi', 'TWI73G1286' => 'twi', 'unitig_26.g10136' => 'ugi', 'unitig_32.g10997' => 'ugi', 'unitig_37.g12051' => 'ugi', 'unitig_899.g14636' => 'ugi', 'unitig_92.g28191' => 'ugi', 'vmacro19392' => 'vma', 'vmacro22282' => 'vma', 'VMungo0251G0891' => 'vmu', 'VMungo0540G0215' => 'vmu', 'VMungo0647G0911' => 'vmu', 'VMungo1080G1379' => 'vmu', 'Zm00001eb205850' => 'zma', 'Zm00001eb215450' => 'zma', 'Zm00001eb235930' => 'zma', 'Zm00001eb295090' => 'zma', 'Zm00001eb327950' => 'zma', 'Zm00001eb343100' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001156', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001156' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001156', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '534', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001156' ) ), 'genes' => array( 'A03p34480' => 'bna', 'A03p64230' => 'bna', 'A03p65440' => 'bna', 'A05p41960' => 'bna', 'A07p31190' => 'bna', 'A08p22720' => 'bna', 'Aa31LG4G10710' => 'aar', 'Aa31LG5G16530' => 'aar', 'Aa31LG6G13220' => 'aar', 'Aa31LG6G14560' => 'aar', 'Actinidia19220' => 'ach', 'Actinidia19323' => 'ach', 'Actinidia22420' => 'ach', 'Ah.02g110810' => 'amhyb', 'Ah.05g178980' => 'amhyb', 'Ah.15g094680' => 'amhyb', 'AL2G29480' => 'aly', 'AL3G16880' => 'aly', 'AL4G22630' => 'aly', 'AL5G12780' => 'aly', 'AL7G13110' => 'aly', 'AL7G14670' => 'aly', 'Aqoxy2G02136' => 'aox', 'Aqoxy3G04261' => 'aox', 'Aqoxy5G00599' => 'aox', 'Aqoxy6G01200' => 'aox', 'Aqoxy6G01412' => 'aox', 'Aqoxy6G01858' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5TMB2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F3RDV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U7G1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WX4FN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0ANZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVE24N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE3SS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQ0X0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF3IUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YYYQ5L' => 'arhy', 'AT1G70190' => 'ath', 'AT2G03130' => 'ath', 'AT3G06040' => 'ath', 'AT4G36420' => 'ath', 'AT4G37660' => 'ath', 'ATR0068G065' => 'atr', 'ATR0564G309' => 'atr', 'ATR0629G117' => 'atr', 'ATR0665G652' => 'atr', 'ATR0705G215' => 'atr', 'ATR0739G108' => 'atr', 'ATR0739G148' => 'atr', 'ATR0749G086' => 'atr', 'ATR0752G124' => 'atr', 'Atru.chr10.430' => 'acertr', 'Atru.chr3.1019' => 'acertr', 'Atru.chr3.2886' => 'acertr', 'Atru.chr3.729' => 'acertr', 'Atru.chr9.2482' => 'acertr', 'AUR62001367' => 'cqu', 'AUR62004556' => 'cqu', 'AUR62008204' => 'cqu', 'AUR62015145' => 'cqu', 'AUR62017607' => 'cqu', 'AUR62022672' => 'cqu', 'AUR62025583' => 'cqu', 'AUR62030957' => 'cqu', 'AUR62033575' => 'cqu', 'BcaB03g12335' => 'bca', 'BcaB03g15533' => 'bca', 'BcaB04g19220' => 'bca', 'BcaC01g00394' => 'bca', 'BcaC01g04321' => 'bca', 'BcaC05g30063' => 'bca', 'BcaC05g30064' => 'bca', 'BcaC08g45837' => 'bca', 'BcaNung02072' => 'bca', 'BcaNung02075' => 'bca', 'BcaNung02077' => 'bca', 'BolC1t00148H' => 'bol', 'BolC3t16477H' => 'bol', 'BolC3t20167H' => 'bol', 'BolC5t34781H' => 'bol', 'BolC6t38745H' => 'bol', 'BolC7t46594H' => 'bol', 'BolC7t46669H' => 'bol', 'BraA03t12625Z' => 'bra', 'BraA03t15494Z' => 'bra', 'BraA03t15596Z' => 'bra', 'BraA05t22918Z' => 'bra', 'BraA07t30752Z' => 'bra', 'BraA08t34241Z' => 'bra', 'C01p01510' => 'bna', 'C03p41940' => 'bna', 'C05p61210' => 'bna', 'C06p36240' => 'bna', 'C07p61690' => 'bna', 'C07p62540' => 'bna', 'CAN.G1075.42' => 'can', 'CAN.G1492.7' => 'can', 'CAN.G206.220' => 'can', 'CAN.G397.75' => 'can', 'CAN.G439.33' => 'can', 'CAN.G678.14' => 'can', 'CANSAT01G1841' => 'cansat', 'CANSAT01G3018' => 'cansat', 'CANSAT80G0830' => 'cansat', 'CANSAT80G1509' => 'cansat', 'CARHR063310' => 'chi', 'CARHR080540' => 'chi', 'CARHR244750' => 'chi', 'CARHR246050' => 'chi', 'Carub.0002s1688' => 'cru', 'Carub.0003s0547' => 'cru', 'Carub.0005s0196' => 'cru', 'Carub.0007s0261' => 'cru', 'Carub.0007s0389' => 'cru', 'Ca_00920_v3' => 'car', 'Ca_00925_v3' => 'car', 'Ca_03176_v3' => 'car', 'Ca_07501_v3' => 'car', 'Ca_11268_v3' => 'car', 'CBR_g2871' => 'cbr', 'Cc00_g05000' => 'ccan', 'Cc00_g05010' => 'ccan', 'Cc00_g05020' => 'ccan', 'Cc07_g10100' => 'ccan', 'Cc09_g05760' => 'ccan', 'Cc11_g12810' => 'ccan', 'CDE02G1704' => 'cde', 'CDE05G0428' => 'cde', 'Cfa000678' => 'cfa', 'Cfa004136' => 'cfa', 'Cfa019137' => 'cfa', 'Ciclev10012849m.g' => 'ccl', 'Ciclev10016633m.g' => 'ccl', 'Ciclev10026576m.g' => 'ccl', 'Ciclev10026634m.g' => 'ccl', 'CiPaw.01G004300' => 'cil', 'CiPaw.07G053000' => 'cil', 'CiPaw.09G074700' => 'cil', 'CiPaw.10G062700' => 'cil', 'CiPaw.11G025700' => 'cil', 'ClCG01G017620' => 'cla', 'ClCG01G019960' => 'cla', 'ClCG03G004220' => 'cla', 'ClCG06G015740' => 'cla', 'ClCG07G016250' => 'cla', 'COL.COLO4_11582' => 'col', 'COL.COLO4_17636' => 'col', 'COL.COLO4_22000' => 'col', 'COL.COLO4_30043' => 'col', 'COL.COLO4_30227' => 'col', 'COL.COLO4_30231' => 'col', 'Cpa.g.c45949' => 'cpa', 'Cpa.g.sc153.25' => 'cpa', 'Cpa.g.sc286.9' => 'cpa', 'Cpa.g.sc33.37' => 'cpa', 'Cpa.g.sc6.11' => 'cpa', 'Cpa.g.sc6.182' => 'cpa', 'Cre06.g293700' => 'cre', 'CsaV3_1G010160' => 'csa', 'CsaV3_3G028630' => 'csa', 'CsaV3_6G044160' => 'csa', 'CsaV3_6G046720' => 'csa', 'CSS0002792' => 'camsi', 'CSS0013566' => 'camsi', 'CSS0016934' => 'camsi', 'CSS0023118' => 'camsi', 'CSS0047861' => 'camsi', 'DCAR_000070' => 'dca', 'DCAR_001292' => 'dca', 'DCAR_004338' => 'dca', 'DCAR_024217' => 'dca', 'DCAR_025801' => 'dca', 'DCAR_025975' => 'dca', 'DCAR_026138' => 'dca', 'DCAR_030083' => 'dca', 'Dinv04043' => 'din', 'Dinv13838' => 'din', 'Dinv17478' => 'din', 'Dinv20649' => 'din', 'Dinv26936' => 'din', 'Dinv40032' => 'din', 'Duzib132G0565' => 'dzi', 'Duzib147G0140' => 'dzi', 'Duzib147G0485' => 'dzi', 'Duzib187G1810' => 'dzi', 'Duzib205G0148' => 'dzi', 'Duzib248G0830' => 'dzi', 'Duzib264G0887' => 'dzi', 'Duzib264G0950' => 'dzi', 'ECA232G2449' => 'eca', 'ECA234G3166' => 'eca', 'ECA238G1178' => 'eca', 'ECA246G0236' => 'eca', 'ECA247G0150' => 'eca', 'EL10Ac1g00191' => 'bvu', 'EL10Ac3g06332' => 'bvu', 'EL10Ac5g10741' => 'bvu', 'EL10Ac9g22855' => 'bvu', 'Eucgr.D02092' => 'egr', 'Eucgr.E04306' => 'egr', 'Eucgr.H02311' => 'egr', 'FAN04G0454' => 'fan', 'FAN04G1980' => 'fan', 'FAN08G0627' => 'fan', 'FAN08G3317' => 'fan', 'FAN11G3550' => 'fan', 'FAN13G2117' => 'fan', 'FAN13G3194' => 'fan', 'FAN15G1597' => 'fan', 'FAN16G2237' => 'fan', 'FAN18G0573' => 'fan', 'FAN18G0963' => 'fan', 'FAN18G2375' => 'fan', 'FAN19G0589' => 'fan', 'FAN19G1670' => 'fan', 'FAN20G0933' => 'fan', 'FAN21G1329' => 'fan', 'FAN23G1548' => 'fan', 'FAN24G2926' => 'fan', 'FAN24G2997' => 'fan', 'FAN25G1424' => 'fan', 'FAN26G1210' => 'fan', 'FAN28G0357' => 'fan', 'FAN28G1657' => 'fan', 'FAN28G2681' => 'fan', 'FvH4_1g12480' => 'fve', 'FvH4_2g11030' => 'fve', 'FvH4_3g12640' => 'fve', 'FvH4_5g04711' => 'fve', 'FvH4_5g05340' => 'fve', 'FvH4_5g26350' => 'fve', 'Glyma.02G052600' => 'gma', 'Glyma.08G164000' => 'gma', 'Glyma.09G029000' => 'gma', 'Glyma.13G077100' => 'gma', 'Glyma.15G134800' => 'gma', 'Glyma.15G263200' => 'gma', 'Glyma.20G052800' => 'gma', 'Gohir.A03G217800' => 'ghi', 'Gohir.A10G089600' => 'ghi', 'Gohir.A11G181200' => 'ghi', 'Gohir.A12G274300' => 'ghi', 'Gohir.D02G239800' => 'ghi', 'Gohir.D10G098500' => 'ghi', 'Gohir.D10G167100' => 'ghi', 'Gohir.D11G187700' => 'ghi', 'Gohir.D12G275000' => 'ghi', 'Gorai.005G268200' => 'gra', 'Gorai.007G199600' => 'gra', 'Gorai.008G295500' => 'gra', 'Gorai.011G108200' => 'gra', 'Gorai.011G186400' => 'gra', 'GSVIVG01007737001' => 'vvi', 'GSVIVG01012121001' => 'vvi', 'HanXRQChr05g0156251' => 'han', 'HanXRQChr07g0190371' => 'han', 'HanXRQChr07g0196421' => 'han', 'HanXRQChr08g0231921' => 'han', 'HanXRQChr12g0355891' => 'han', 'HanXRQChr14g0445281' => 'han', 'HanXRQChr16g0522361' => 'han', 'Haze_03841' => 'cav', 'Haze_06140' => 'cav', 'Haze_07504' => 'cav', 'Haze_15278' => 'cav', 'Haze_26791' => 'cav', 'Hma1.2p1_0176F.1_g077370' => 'hma', 'Hma1.2p1_0327F.1_g126500' => 'hma', 'Hma1.2p1_0701F.1_g205880' => 'hma', 'Hma1.2p1_0852F.1_g228590' => 'hma', 'Hma1.2p1_0913F.1_g235980' => 'hma', 'Hma1.2p1_2409F.1_g321500' => 'hma', 'HPP92_008592' => 'vpl', 'HPP92_021567' => 'vpl', 'HPP92_027134' => 'vpl', 'HPP92_027258' => 'vpl', 'Hund08877' => 'sun', 'Lalb_Chr01g0015551' => 'lal', 'Lalb_Chr09g0333401' => 'lal', 'Lalb_Chr16g0391001' => 'lal', 'Lalb_Chr18g0058261' => 'lal', 'Lalb_Chr18g0058311' => 'lal', 'Lalb_Chr25g0284381' => 'lal', 'Lj1P1147T19' => 'lonja', 'Lj3g0004919' => 'lja', 'Lj4g0026319' => 'lja', 'Lj4P210T17' => 'lonja', 'Lj5E124G2' => 'lonja', 'Lj5P124T52' => 'lonja', 'Lj6g0004694' => 'lja', 'Lj6g0014938' => 'lja', 'Lj7P99T29' => 'lonja', 'Lju470C11T7' => 'lonja', 'Lsat_1_v5_gn_2_78060' => 'lsa', 'Lsat_1_v5_gn_4_161541' => 'lsa', 'Lsat_1_v5_gn_5_14700' => 'lsa', 'Lsat_1_v5_gn_5_99221' => 'lsa', 'Lsat_1_v5_gn_8_95040' => 'lsa', 'Manes.01G140300' => 'mes', 'Manes.02G098500' => 'mes', 'Manes.03G074200' => 'mes', 'Manes.06G105200' => 'mes', 'Manes.13G111200' => 'mes', 'Manes.14G065500' => 'mes', 'Mapoly0065s0065' => 'mpo', 'MBI02_g37836_MAGBIO' => 'mbi', 'MBI05_g28544_MAGBIO' => 'mbi', 'MBI10_g06740_MAGBIO' => 'mbi', 'MBI11_g32385_MAGBIO' => 'mbi', 'MBI13_g20251_MAGBIO' => 'mbi', 'MCO03G603' => 'mco', 'MCO16G455' => 'mco', 'MD02G1138800' => 'mdo', 'MD02G1139200' => 'mdo', 'MD04G1041700' => 'mdo', 'MD05G1040200' => 'mdo', 'MD05G1249000' => 'mdo', 'MD06G1173500' => 'mdo', 'MD10G1046200' => 'mdo', 'MD10G1229600' => 'mdo', 'MD14G1180000' => 'mdo', 'MD15G1252100' => 'mdo', 'Medtr2g031760' => 'mtr', 'Medtr2g031960' => 'mtr', 'Medtr2g064300' => 'mtr', 'Medtr7g053520' => 'mtr', 'Medtr8g076780' => 'mtr', 'MELO3C002405.2' => 'cme', 'MELO3C003920.2' => 'cme', 'MELO3C007639.2' => 'cme', 'MELO3C007869.2' => 'cme', 'MELO3C011871.2' => 'cme', 'MELO3C034168.2' => 'cme', 'Migut.D01470' => 'egut', 'Migut.H00300' => 'egut', 'Migut.H02508' => 'egut', 'Migut.N00989' => 'egut', 'Migut.N00990' => 'egut', 'Migut.N01934' => 'egut', 'MSTRG.17770' => 'ama', 'MSTRG.23261' => 'ama', 'MSTRG.7600' => 'ama', 'Nitab4.5_0000073g0570' => 'nta', 'Nitab4.5_0000138g0090' => 'nta', 'Nitab4.5_0000142g0110' => 'nta', 'Nitab4.5_0000723g0100' => 'nta', 'Nitab4.5_0001875g0090' => 'nta', 'Nitab4.5_0002015g0010' => 'nta', 'Nitab4.5_0004025g0030' => 'nta', 'Nitab4.5_0004708g0040' => 'nta', 'Nitab4.5_0005023g0040' => 'nta', 'Nitab4.5_0008618g0010' => 'nta', 'Nn4g22755' => 'nnu', 'Nn4g24689' => 'nnu', 'Nn5g29714' => 'nnu', 'Nn5g30607' => 'nnu', 'Oeu002030.1' => 'oeu', 'Oeu011985.1' => 'oeu', 'Oeu018077.1' => 'oeu', 'Oeu018233.1' => 'oeu', 'Oeu032424.1' => 'oeu', 'Oeu056050.1' => 'oeu', 'Oeu058940.1' => 'oeu', 'Os02g0198900' => 'osa', 'Os03g0734400' => 'osa', 'Os05g0554100' => 'osa', 'Os07g0626100' => 'osa', 'Peaxi162Scf00047g02423' => 'pax', 'Peaxi162Scf00198g00103' => 'pax', 'Peaxi162Scf00241g10022' => 'pax', 'Peaxi162Scf00548g00057' => 'pax', 'Peaxi162Scf00556g00055' => 'pax', 'PGR042G0243' => 'pgr', 'PGR102G0269' => 'pgr', 'PGR102G1158' => 'pgr', 'PGR119G0889' => 'pgr', 'PGR119G1972' => 'pgr', 'PGSC0003DMG400001451' => 'stu', 'PGSC0003DMG400008867' => 'stu', 'PGSC0003DMG400014931' => 'stu', 'PGSC0003DMG400018715' => 'stu', 'PGSC0003DMG400021441' => 'stu', 'Phvul.002G273000' => 'pvu', 'Phvul.003G257500' => 'pvu', 'Phvul.005G074800' => 'pvu', 'Phvul.006G021600' => 'pvu', 'Phvul.006G124100' => 'pvu', 'Phvul.007G244500' => 'pvu', 'Potri.003G074800' => 'ptr', 'Potri.004G224300' => 'ptr', 'Potri.007G019100' => 'ptr', 'Potri.015G077200' => 'ptr', 'Pp3c12_17640' => 'ppa', 'Pp3c19_21200' => 'ppa', 'Pp3c21_6760' => 'ppa', 'Pp3c3_26860' => 'ppa', 'PRCOL_00003541' => 'pco', 'Prupe.1G195400' => 'ppe', 'Prupe.4G115200' => 'ppe', 'Prupe.5G173000' => 'ppe', 'Prupe.7G162000' => 'ppe', 'Prupe.8G053900' => 'ppe', 'Prupe.8G072700' => 'ppe', 'Psat1g015120' => 'psa', 'Psat1g164400' => 'psa', 'Psat1g164640' => 'psa', 'Psat3g150240' => 'psa', 'Psat4g096320' => 'psa', 'PSO063G4759' => 'pso', 'PSO339G1229' => 'pso', 'PSO339G3237' => 'pso', 'PSO384G4181' => 'pso', 'PSO384G4824' => 'pso', 'PSO541G0283' => 'pso', 'PSO541G0845' => 'pso', 'PSO675G0077' => 'pso', 'PSO675G7370' => 'pso', 'PSO832G3715' => 'pso', 'QL06p039532' => 'qlo', 'QL07p045230' => 'qlo', 'QL08p056981' => 'qlo', 'QL10p007541' => 'qlo', 'QL10p015865' => 'qlo', 'QL11p013638' => 'qlo', 'RcHm_v2.0_Chr2g0100351' => 'rch', 'RcHm_v2.0_Chr5g0020611' => 'rch', 'RcHm_v2.0_Chr6g0269241' => 'rch', 'RcHm_v2.0_Chr7g0193501' => 'rch', 'RcHm_v2.0_Chr7g0217101' => 'rch', 'RcHm_v2.0_Chr7g0217161' => 'rch', 'Rhsim03G0068400' => 'rsi', 'Rhsim06G0063500' => 'rsi', 'Rhsim08G0093100' => 'rsi', 'Rhsim08G0172700' => 'rsi', 'Rhsim08G0172800' => 'rsi', 'Sabra01G0170400' => 'sbr', 'Sabra03G0045500' => 'sbr', 'Sabra07G0016400' => 'sbr', 'Sabra12G0058200' => 'sbr', 'Sabra15G0101900' => 'sbr', 'SalBow3G1888' => 'sbo', 'SalBow3G2897' => 'sbo', 'SalBow4G2558' => 'sbo', 'SalBow6G0603' => 'sbo', 'SalBow6G4805' => 'sbo', 'SalBow6G5516' => 'sbo', 'SalBow8G3047' => 'sbo', 'SalBow8G3377' => 'sbo', 'SalBow8G4176' => 'sbo', 'Sc01g0002240' => 'sci', 'Sc03g0003230' => 'sci', 'Sc05g0004740' => 'sci', 'Sc12g0005310' => 'sci', 'Sed0004231' => 'sed', 'Sed0005290' => 'sed', 'Sed0005933' => 'sed', 'Sed0013334' => 'sed', 'Sed0013751' => 'sed', 'Sed0024267' => 'sed', 'SEGI_08694' => 'sgi', 'SEGI_09069' => 'sgi', 'SEGI_12175' => 'sgi', 'SEGI_23469' => 'sgi', 'SEGI_36105' => 'sgi', 'SGA_v2.0_scaffold51G18801' => 'sas', 'SGA_v2.0_scaffold62G21596' => 'sas', 'SGA_v2.0_scaffold72G24071' => 'sas', 'SHI08615' => 'shi', 'SHI16975' => 'shi', 'SMO270G0043' => 'smo', 'Solyc02g031970.1' => 'sly', 'Solyc02g088760.2' => 'sly', 'Solyc02g092300.1' => 'sly', 'Solyc09g010030.3' => 'sly', 'Solyc11g071530.1' => 'sly', 'Sopen02g010230' => 'spe', 'Sopen02g033470' => 'spe', 'Sopen02g036870' => 'spe', 'Sopen09g004770' => 'spe', 'Sopen11g029220' => 'spe', 'Sp3g04990' => 'spa', 'Sp5g25310' => 'spa', 'Sp6g12180' => 'spa', 'Sp7g34080' => 'spa', 'Sp7g35310' => 'spa', 'TAR371G0150' => 'tar', 'TAR376G0630' => 'tar', 'TAR381G0864' => 'tar', 'TAR622G0652' => 'tar', 'TAR626G0967' => 'tar', 'TAR627G0190' => 'tar', 'TAR627G0865' => 'tar', 'THA.LOC104802756' => 'tha', 'THA.LOC104807473' => 'tha', 'THA.LOC104811737' => 'tha', 'THA.LOC104822304' => 'tha', 'Thecc.01G027100' => 'tca', 'Thecc.01G073200' => 'tca', 'Thecc.02G006100' => 'tca', 'Thecc.03G013100' => 'tca', 'Thhalv10019124m.g' => 'esa', 'Thhalv10021590m.g' => 'esa', 'Thhalv10026420m.g' => 'esa', 'Thhalv10026763m.g' => 'esa', 'Thhalv10027419m.g' => 'esa', 'TPR.G21534' => 'tpr', 'TPR.G28435' => 'tpr', 'TPR.G29154' => 'tpr', 'TPR.G8028' => 'tpr', 'TPR.G8034' => 'tpr', 'TWI14G1176' => 'twi', 'TWI15G0681' => 'twi', 'TWI38G0313' => 'twi', 'TWI39G0852' => 'twi', 'TWI59G0342' => 'twi', 'TWI73G1286' => 'twi', 'unitig_26.g10136' => 'ugi', 'unitig_32.g10997' => 'ugi', 'unitig_37.g12051' => 'ugi', 'unitig_899.g14636' => 'ugi', 'unitig_92.g28191' => 'ugi', 'vmacro19392' => 'vma', 'vmacro22282' => 'vma', 'VMungo0251G0891' => 'vmu', 'VMungo0540G0215' => 'vmu', 'VMungo0647G0911' => 'vmu', 'VMungo1080G1379' => 'vmu', 'Zm00001eb205850' => 'zma', 'Zm00001eb215450' => 'zma', 'Zm00001eb235930' => 'zma', 'Zm00001eb295090' => 'zma', 'Zm00001eb327950' => 'zma', 'Zm00001eb343100' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001156' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001156' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001156' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001156' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001156', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '534', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p34480' => 'bna', 'A03p64230' => 'bna', 'A03p65440' => 'bna', 'A05p41960' => 'bna', 'A07p31190' => 'bna', 'A08p22720' => 'bna', 'Aa31LG4G10710' => 'aar', 'Aa31LG5G16530' => 'aar', 'Aa31LG6G13220' => 'aar', 'Aa31LG6G14560' => 'aar', 'Actinidia19220' => 'ach', 'Actinidia19323' => 'ach', 'Actinidia22420' => 'ach', 'Ah.02g110810' => 'amhyb', 'Ah.05g178980' => 'amhyb', 'Ah.15g094680' => 'amhyb', 'AL2G29480' => 'aly', 'AL3G16880' => 'aly', 'AL4G22630' => 'aly', 'AL5G12780' => 'aly', 'AL7G13110' => 'aly', 'AL7G14670' => 'aly', 'Aqoxy2G02136' => 'aox', 'Aqoxy3G04261' => 'aox', 'Aqoxy5G00599' => 'aox', 'Aqoxy6G01200' => 'aox', 'Aqoxy6G01412' => 'aox', 'Aqoxy6G01858' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5TMB2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F3RDV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U7G1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WX4FN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0ANZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVE24N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE3SS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQ0X0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF3IUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YYYQ5L' => 'arhy', 'AT1G70190' => 'ath', 'AT2G03130' => 'ath', 'AT3G06040' => 'ath', 'AT4G36420' => 'ath', 'AT4G37660' => 'ath', 'ATR0068G065' => 'atr', 'ATR0564G309' => 'atr', 'ATR0629G117' => 'atr', 'ATR0665G652' => 'atr', 'ATR0705G215' => 'atr', 'ATR0739G108' => 'atr', 'ATR0739G148' => 'atr', 'ATR0749G086' => 'atr', 'ATR0752G124' => 'atr', 'Atru.chr10.430' => 'acertr', 'Atru.chr3.1019' => 'acertr', 'Atru.chr3.2886' => 'acertr', 'Atru.chr3.729' => 'acertr', 'Atru.chr9.2482' => 'acertr', 'AUR62001367' => 'cqu', 'AUR62004556' => 'cqu', 'AUR62008204' => 'cqu', 'AUR62015145' => 'cqu', 'AUR62017607' => 'cqu', 'AUR62022672' => 'cqu', 'AUR62025583' => 'cqu', 'AUR62030957' => 'cqu', 'AUR62033575' => 'cqu', 'BcaB03g12335' => 'bca', 'BcaB03g15533' => 'bca', 'BcaB04g19220' => 'bca', 'BcaC01g00394' => 'bca', 'BcaC01g04321' => 'bca', 'BcaC05g30063' => 'bca', 'BcaC05g30064' => 'bca', 'BcaC08g45837' => 'bca', 'BcaNung02072' => 'bca', 'BcaNung02075' => 'bca', 'BcaNung02077' => 'bca', 'BolC1t00148H' => 'bol', 'BolC3t16477H' => 'bol', 'BolC3t20167H' => 'bol', 'BolC5t34781H' => 'bol', 'BolC6t38745H' => 'bol', 'BolC7t46594H' => 'bol', 'BolC7t46669H' => 'bol', 'BraA03t12625Z' => 'bra', 'BraA03t15494Z' => 'bra', 'BraA03t15596Z' => 'bra', 'BraA05t22918Z' => 'bra', 'BraA07t30752Z' => 'bra', 'BraA08t34241Z' => 'bra', 'C01p01510' => 'bna', 'C03p41940' => 'bna', 'C05p61210' => 'bna', 'C06p36240' => 'bna', 'C07p61690' => 'bna', 'C07p62540' => 'bna', 'CAN.G1075.42' => 'can', 'CAN.G1492.7' => 'can', 'CAN.G206.220' => 'can', 'CAN.G397.75' => 'can', 'CAN.G439.33' => 'can', 'CAN.G678.14' => 'can', 'CANSAT01G1841' => 'cansat', 'CANSAT01G3018' => 'cansat', 'CANSAT80G0830' => 'cansat', 'CANSAT80G1509' => 'cansat', 'CARHR063310' => 'chi', 'CARHR080540' => 'chi', 'CARHR244750' => 'chi', 'CARHR246050' => 'chi', 'Carub.0002s1688' => 'cru', 'Carub.0003s0547' => 'cru', 'Carub.0005s0196' => 'cru', 'Carub.0007s0261' => 'cru', 'Carub.0007s0389' => 'cru', 'Ca_00920_v3' => 'car', 'Ca_00925_v3' => 'car', 'Ca_03176_v3' => 'car', 'Ca_07501_v3' => 'car', 'Ca_11268_v3' => 'car', 'CBR_g2871' => 'cbr', 'Cc00_g05000' => 'ccan', 'Cc00_g05010' => 'ccan', 'Cc00_g05020' => 'ccan', 'Cc07_g10100' => 'ccan', 'Cc09_g05760' => 'ccan', 'Cc11_g12810' => 'ccan', 'CDE02G1704' => 'cde', 'CDE05G0428' => 'cde', 'Cfa000678' => 'cfa', 'Cfa004136' => 'cfa', 'Cfa019137' => 'cfa', 'Ciclev10012849m.g' => 'ccl', 'Ciclev10016633m.g' => 'ccl', 'Ciclev10026576m.g' => 'ccl', 'Ciclev10026634m.g' => 'ccl', 'CiPaw.01G004300' => 'cil', 'CiPaw.07G053000' => 'cil', 'CiPaw.09G074700' => 'cil', 'CiPaw.10G062700' => 'cil', 'CiPaw.11G025700' => 'cil', 'ClCG01G017620' => 'cla', 'ClCG01G019960' => 'cla', 'ClCG03G004220' => 'cla', 'ClCG06G015740' => 'cla', 'ClCG07G016250' => 'cla', 'COL.COLO4_11582' => 'col', 'COL.COLO4_17636' => 'col', 'COL.COLO4_22000' => 'col', 'COL.COLO4_30043' => 'col', 'COL.COLO4_30227' => 'col', 'COL.COLO4_30231' => 'col', 'Cpa.g.c45949' => 'cpa', 'Cpa.g.sc153.25' => 'cpa', 'Cpa.g.sc286.9' => 'cpa', 'Cpa.g.sc33.37' => 'cpa', 'Cpa.g.sc6.11' => 'cpa', 'Cpa.g.sc6.182' => 'cpa', 'Cre06.g293700' => 'cre', 'CsaV3_1G010160' => 'csa', 'CsaV3_3G028630' => 'csa', 'CsaV3_6G044160' => 'csa', 'CsaV3_6G046720' => 'csa', 'CSS0002792' => 'camsi', 'CSS0013566' => 'camsi', 'CSS0016934' => 'camsi', 'CSS0023118' => 'camsi', 'CSS0047861' => 'camsi', 'DCAR_000070' => 'dca', 'DCAR_001292' => 'dca', 'DCAR_004338' => 'dca', 'DCAR_024217' => 'dca', 'DCAR_025801' => 'dca', 'DCAR_025975' => 'dca', 'DCAR_026138' => 'dca', 'DCAR_030083' => 'dca', 'Dinv04043' => 'din', 'Dinv13838' => 'din', 'Dinv17478' => 'din', 'Dinv20649' => 'din', 'Dinv26936' => 'din', 'Dinv40032' => 'din', 'Duzib132G0565' => 'dzi', 'Duzib147G0140' => 'dzi', 'Duzib147G0485' => 'dzi', 'Duzib187G1810' => 'dzi', 'Duzib205G0148' => 'dzi', 'Duzib248G0830' => 'dzi', 'Duzib264G0887' => 'dzi', 'Duzib264G0950' => 'dzi', 'ECA232G2449' => 'eca', 'ECA234G3166' => 'eca', 'ECA238G1178' => 'eca', 'ECA246G0236' => 'eca', 'ECA247G0150' => 'eca', 'EL10Ac1g00191' => 'bvu', 'EL10Ac3g06332' => 'bvu', 'EL10Ac5g10741' => 'bvu', 'EL10Ac9g22855' => 'bvu', 'Eucgr.D02092' => 'egr', 'Eucgr.E04306' => 'egr', 'Eucgr.H02311' => 'egr', 'FAN04G0454' => 'fan', 'FAN04G1980' => 'fan', 'FAN08G0627' => 'fan', 'FAN08G3317' => 'fan', 'FAN11G3550' => 'fan', 'FAN13G2117' => 'fan', 'FAN13G3194' => 'fan', 'FAN15G1597' => 'fan', 'FAN16G2237' => 'fan', 'FAN18G0573' => 'fan', 'FAN18G0963' => 'fan', 'FAN18G2375' => 'fan', 'FAN19G0589' => 'fan', 'FAN19G1670' => 'fan', 'FAN20G0933' => 'fan', 'FAN21G1329' => 'fan', 'FAN23G1548' => 'fan', 'FAN24G2926' => 'fan', 'FAN24G2997' => 'fan', 'FAN25G1424' => 'fan', 'FAN26G1210' => 'fan', 'FAN28G0357' => 'fan', 'FAN28G1657' => 'fan', 'FAN28G2681' => 'fan', 'FvH4_1g12480' => 'fve', 'FvH4_2g11030' => 'fve', 'FvH4_3g12640' => 'fve', 'FvH4_5g04711' => 'fve', 'FvH4_5g05340' => 'fve', 'FvH4_5g26350' => 'fve', 'Glyma.02G052600' => 'gma', 'Glyma.08G164000' => 'gma', 'Glyma.09G029000' => 'gma', 'Glyma.13G077100' => 'gma', 'Glyma.15G134800' => 'gma', 'Glyma.15G263200' => 'gma', 'Glyma.20G052800' => 'gma', 'Gohir.A03G217800' => 'ghi', 'Gohir.A10G089600' => 'ghi', 'Gohir.A11G181200' => 'ghi', 'Gohir.A12G274300' => 'ghi', 'Gohir.D02G239800' => 'ghi', 'Gohir.D10G098500' => 'ghi', 'Gohir.D10G167100' => 'ghi', 'Gohir.D11G187700' => 'ghi', 'Gohir.D12G275000' => 'ghi', 'Gorai.005G268200' => 'gra', 'Gorai.007G199600' => 'gra', 'Gorai.008G295500' => 'gra', 'Gorai.011G108200' => 'gra', 'Gorai.011G186400' => 'gra', 'GSVIVG01007737001' => 'vvi', 'GSVIVG01012121001' => 'vvi', 'HanXRQChr05g0156251' => 'han', 'HanXRQChr07g0190371' => 'han', 'HanXRQChr07g0196421' => 'han', 'HanXRQChr08g0231921' => 'han', 'HanXRQChr12g0355891' => 'han', 'HanXRQChr14g0445281' => 'han', 'HanXRQChr16g0522361' => 'han', 'Haze_03841' => 'cav', 'Haze_06140' => 'cav', 'Haze_07504' => 'cav', 'Haze_15278' => 'cav', 'Haze_26791' => 'cav', 'Hma1.2p1_0176F.1_g077370' => 'hma', 'Hma1.2p1_0327F.1_g126500' => 'hma', 'Hma1.2p1_0701F.1_g205880' => 'hma', 'Hma1.2p1_0852F.1_g228590' => 'hma', 'Hma1.2p1_0913F.1_g235980' => 'hma', 'Hma1.2p1_2409F.1_g321500' => 'hma', 'HPP92_008592' => 'vpl', 'HPP92_021567' => 'vpl', 'HPP92_027134' => 'vpl', 'HPP92_027258' => 'vpl', 'Hund08877' => 'sun', 'Lalb_Chr01g0015551' => 'lal', 'Lalb_Chr09g0333401' => 'lal', 'Lalb_Chr16g0391001' => 'lal', 'Lalb_Chr18g0058261' => 'lal', 'Lalb_Chr18g0058311' => 'lal', 'Lalb_Chr25g0284381' => 'lal', 'Lj1P1147T19' => 'lonja', 'Lj3g0004919' => 'lja', 'Lj4g0026319' => 'lja', 'Lj4P210T17' => 'lonja', 'Lj5E124G2' => 'lonja', 'Lj5P124T52' => 'lonja', 'Lj6g0004694' => 'lja', 'Lj6g0014938' => 'lja', 'Lj7P99T29' => 'lonja', 'Lju470C11T7' => 'lonja', 'Lsat_1_v5_gn_2_78060' => 'lsa', 'Lsat_1_v5_gn_4_161541' => 'lsa', 'Lsat_1_v5_gn_5_14700' => 'lsa', 'Lsat_1_v5_gn_5_99221' => 'lsa', 'Lsat_1_v5_gn_8_95040' => 'lsa', 'Manes.01G140300' => 'mes', 'Manes.02G098500' => 'mes', 'Manes.03G074200' => 'mes', 'Manes.06G105200' => 'mes', 'Manes.13G111200' => 'mes', 'Manes.14G065500' => 'mes', 'Mapoly0065s0065' => 'mpo', 'MBI02_g37836_MAGBIO' => 'mbi', 'MBI05_g28544_MAGBIO' => 'mbi', 'MBI10_g06740_MAGBIO' => 'mbi', 'MBI11_g32385_MAGBIO' => 'mbi', 'MBI13_g20251_MAGBIO' => 'mbi', 'MCO03G603' => 'mco', 'MCO16G455' => 'mco', 'MD02G1138800' => 'mdo', 'MD02G1139200' => 'mdo', 'MD04G1041700' => 'mdo', 'MD05G1040200' => 'mdo', 'MD05G1249000' => 'mdo', 'MD06G1173500' => 'mdo', 'MD10G1046200' => 'mdo', 'MD10G1229600' => 'mdo', 'MD14G1180000' => 'mdo', 'MD15G1252100' => 'mdo', 'Medtr2g031760' => 'mtr', 'Medtr2g031960' => 'mtr', 'Medtr2g064300' => 'mtr', 'Medtr7g053520' => 'mtr', 'Medtr8g076780' => 'mtr', 'MELO3C002405.2' => 'cme', 'MELO3C003920.2' => 'cme', 'MELO3C007639.2' => 'cme', 'MELO3C007869.2' => 'cme', 'MELO3C011871.2' => 'cme', 'MELO3C034168.2' => 'cme', 'Migut.D01470' => 'egut', 'Migut.H00300' => 'egut', 'Migut.H02508' => 'egut', 'Migut.N00989' => 'egut', 'Migut.N00990' => 'egut', 'Migut.N01934' => 'egut', 'MSTRG.17770' => 'ama', 'MSTRG.23261' => 'ama', 'MSTRG.7600' => 'ama', 'Nitab4.5_0000073g0570' => 'nta', 'Nitab4.5_0000138g0090' => 'nta', 'Nitab4.5_0000142g0110' => 'nta', 'Nitab4.5_0000723g0100' => 'nta', 'Nitab4.5_0001875g0090' => 'nta', 'Nitab4.5_0002015g0010' => 'nta', 'Nitab4.5_0004025g0030' => 'nta', 'Nitab4.5_0004708g0040' => 'nta', 'Nitab4.5_0005023g0040' => 'nta', 'Nitab4.5_0008618g0010' => 'nta', 'Nn4g22755' => 'nnu', 'Nn4g24689' => 'nnu', 'Nn5g29714' => 'nnu', 'Nn5g30607' => 'nnu', 'Oeu002030.1' => 'oeu', 'Oeu011985.1' => 'oeu', 'Oeu018077.1' => 'oeu', 'Oeu018233.1' => 'oeu', 'Oeu032424.1' => 'oeu', 'Oeu056050.1' => 'oeu', 'Oeu058940.1' => 'oeu', 'Os02g0198900' => 'osa', 'Os03g0734400' => 'osa', 'Os05g0554100' => 'osa', 'Os07g0626100' => 'osa', 'Peaxi162Scf00047g02423' => 'pax', 'Peaxi162Scf00198g00103' => 'pax', 'Peaxi162Scf00241g10022' => 'pax', 'Peaxi162Scf00548g00057' => 'pax', 'Peaxi162Scf00556g00055' => 'pax', 'PGR042G0243' => 'pgr', 'PGR102G0269' => 'pgr', 'PGR102G1158' => 'pgr', 'PGR119G0889' => 'pgr', 'PGR119G1972' => 'pgr', 'PGSC0003DMG400001451' => 'stu', 'PGSC0003DMG400008867' => 'stu', 'PGSC0003DMG400014931' => 'stu', 'PGSC0003DMG400018715' => 'stu', 'PGSC0003DMG400021441' => 'stu', 'Phvul.002G273000' => 'pvu', 'Phvul.003G257500' => 'pvu', 'Phvul.005G074800' => 'pvu', 'Phvul.006G021600' => 'pvu', 'Phvul.006G124100' => 'pvu', 'Phvul.007G244500' => 'pvu', 'Potri.003G074800' => 'ptr', 'Potri.004G224300' => 'ptr', 'Potri.007G019100' => 'ptr', 'Potri.015G077200' => 'ptr', 'Pp3c12_17640' => 'ppa', 'Pp3c19_21200' => 'ppa', 'Pp3c21_6760' => 'ppa', 'Pp3c3_26860' => 'ppa', 'PRCOL_00003541' => 'pco', 'Prupe.1G195400' => 'ppe', 'Prupe.4G115200' => 'ppe', 'Prupe.5G173000' => 'ppe', 'Prupe.7G162000' => 'ppe', 'Prupe.8G053900' => 'ppe', 'Prupe.8G072700' => 'ppe', 'Psat1g015120' => 'psa', 'Psat1g164400' => 'psa', 'Psat1g164640' => 'psa', 'Psat3g150240' => 'psa', 'Psat4g096320' => 'psa', 'PSO063G4759' => 'pso', 'PSO339G1229' => 'pso', 'PSO339G3237' => 'pso', 'PSO384G4181' => 'pso', 'PSO384G4824' => 'pso', 'PSO541G0283' => 'pso', 'PSO541G0845' => 'pso', 'PSO675G0077' => 'pso', 'PSO675G7370' => 'pso', 'PSO832G3715' => 'pso', 'QL06p039532' => 'qlo', 'QL07p045230' => 'qlo', 'QL08p056981' => 'qlo', 'QL10p007541' => 'qlo', 'QL10p015865' => 'qlo', 'QL11p013638' => 'qlo', 'RcHm_v2.0_Chr2g0100351' => 'rch', 'RcHm_v2.0_Chr5g0020611' => 'rch', 'RcHm_v2.0_Chr6g0269241' => 'rch', 'RcHm_v2.0_Chr7g0193501' => 'rch', 'RcHm_v2.0_Chr7g0217101' => 'rch', 'RcHm_v2.0_Chr7g0217161' => 'rch', 'Rhsim03G0068400' => 'rsi', 'Rhsim06G0063500' => 'rsi', 'Rhsim08G0093100' => 'rsi', 'Rhsim08G0172700' => 'rsi', 'Rhsim08G0172800' => 'rsi', 'Sabra01G0170400' => 'sbr', 'Sabra03G0045500' => 'sbr', 'Sabra07G0016400' => 'sbr', 'Sabra12G0058200' => 'sbr', 'Sabra15G0101900' => 'sbr', 'SalBow3G1888' => 'sbo', 'SalBow3G2897' => 'sbo', 'SalBow4G2558' => 'sbo', 'SalBow6G0603' => 'sbo', 'SalBow6G4805' => 'sbo', 'SalBow6G5516' => 'sbo', 'SalBow8G3047' => 'sbo', 'SalBow8G3377' => 'sbo', 'SalBow8G4176' => 'sbo', 'Sc01g0002240' => 'sci', 'Sc03g0003230' => 'sci', 'Sc05g0004740' => 'sci', 'Sc12g0005310' => 'sci', 'Sed0004231' => 'sed', 'Sed0005290' => 'sed', 'Sed0005933' => 'sed', 'Sed0013334' => 'sed', 'Sed0013751' => 'sed', 'Sed0024267' => 'sed', 'SEGI_08694' => 'sgi', 'SEGI_09069' => 'sgi', 'SEGI_12175' => 'sgi', 'SEGI_23469' => 'sgi', 'SEGI_36105' => 'sgi', 'SGA_v2.0_scaffold51G18801' => 'sas', 'SGA_v2.0_scaffold62G21596' => 'sas', 'SGA_v2.0_scaffold72G24071' => 'sas', 'SHI08615' => 'shi', 'SHI16975' => 'shi', 'SMO270G0043' => 'smo', 'Solyc02g031970.1' => 'sly', 'Solyc02g088760.2' => 'sly', 'Solyc02g092300.1' => 'sly', 'Solyc09g010030.3' => 'sly', 'Solyc11g071530.1' => 'sly', 'Sopen02g010230' => 'spe', 'Sopen02g033470' => 'spe', 'Sopen02g036870' => 'spe', 'Sopen09g004770' => 'spe', 'Sopen11g029220' => 'spe', 'Sp3g04990' => 'spa', 'Sp5g25310' => 'spa', 'Sp6g12180' => 'spa', 'Sp7g34080' => 'spa', 'Sp7g35310' => 'spa', 'TAR371G0150' => 'tar', 'TAR376G0630' => 'tar', 'TAR381G0864' => 'tar', 'TAR622G0652' => 'tar', 'TAR626G0967' => 'tar', 'TAR627G0190' => 'tar', 'TAR627G0865' => 'tar', 'THA.LOC104802756' => 'tha', 'THA.LOC104807473' => 'tha', 'THA.LOC104811737' => 'tha', 'THA.LOC104822304' => 'tha', 'Thecc.01G027100' => 'tca', 'Thecc.01G073200' => 'tca', 'Thecc.02G006100' => 'tca', 'Thecc.03G013100' => 'tca', 'Thhalv10019124m.g' => 'esa', 'Thhalv10021590m.g' => 'esa', 'Thhalv10026420m.g' => 'esa', 'Thhalv10026763m.g' => 'esa', 'Thhalv10027419m.g' => 'esa', 'TPR.G21534' => 'tpr', 'TPR.G28435' => 'tpr', 'TPR.G29154' => 'tpr', 'TPR.G8028' => 'tpr', 'TPR.G8034' => 'tpr', 'TWI14G1176' => 'twi', 'TWI15G0681' => 'twi', 'TWI38G0313' => 'twi', 'TWI39G0852' => 'twi', 'TWI59G0342' => 'twi', 'TWI73G1286' => 'twi', 'unitig_26.g10136' => 'ugi', 'unitig_32.g10997' => 'ugi', 'unitig_37.g12051' => 'ugi', 'unitig_899.g14636' => 'ugi', 'unitig_92.g28191' => 'ugi', 'vmacro19392' => 'vma', 'vmacro22282' => 'vma', 'VMungo0251G0891' => 'vmu', 'VMungo0540G0215' => 'vmu', 'VMungo0647G0911' => 'vmu', 'VMungo1080G1379' => 'vmu', 'Zm00001eb205850' => 'zma', 'Zm00001eb215450' => 'zma', 'Zm00001eb235930' => 'zma', 'Zm00001eb295090' => 'zma', 'Zm00001eb327950' => 'zma', 'Zm00001eb343100' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001156', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001156' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001156', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '534', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001156' ) ), 'genes' => array( 'A03p34480' => 'bna', 'A03p64230' => 'bna', 'A03p65440' => 'bna', 'A05p41960' => 'bna', 'A07p31190' => 'bna', 'A08p22720' => 'bna', 'Aa31LG4G10710' => 'aar', 'Aa31LG5G16530' => 'aar', 'Aa31LG6G13220' => 'aar', 'Aa31LG6G14560' => 'aar', 'Actinidia19220' => 'ach', 'Actinidia19323' => 'ach', 'Actinidia22420' => 'ach', 'Ah.02g110810' => 'amhyb', 'Ah.05g178980' => 'amhyb', 'Ah.15g094680' => 'amhyb', 'AL2G29480' => 'aly', 'AL3G16880' => 'aly', 'AL4G22630' => 'aly', 'AL5G12780' => 'aly', 'AL7G13110' => 'aly', 'AL7G14670' => 'aly', 'Aqoxy2G02136' => 'aox', 'Aqoxy3G04261' => 'aox', 'Aqoxy5G00599' => 'aox', 'Aqoxy6G01200' => 'aox', 'Aqoxy6G01412' => 'aox', 'Aqoxy6G01858' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5TMB2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F3RDV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U7G1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WX4FN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0ANZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVE24N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JE3SS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQ0X0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VF3IUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YYYQ5L' => 'arhy', 'AT1G70190' => 'ath', 'AT2G03130' => 'ath', 'AT3G06040' => 'ath', 'AT4G36420' => 'ath', 'AT4G37660' => 'ath', 'ATR0068G065' => 'atr', 'ATR0564G309' => 'atr', 'ATR0629G117' => 'atr', 'ATR0665G652' => 'atr', 'ATR0705G215' => 'atr', 'ATR0739G108' => 'atr', 'ATR0739G148' => 'atr', 'ATR0749G086' => 'atr', 'ATR0752G124' => 'atr', 'Atru.chr10.430' => 'acertr', 'Atru.chr3.1019' => 'acertr', 'Atru.chr3.2886' => 'acertr', 'Atru.chr3.729' => 'acertr', 'Atru.chr9.2482' => 'acertr', 'AUR62001367' => 'cqu', 'AUR62004556' => 'cqu', 'AUR62008204' => 'cqu', 'AUR62015145' => 'cqu', 'AUR62017607' => 'cqu', 'AUR62022672' => 'cqu', 'AUR62025583' => 'cqu', 'AUR62030957' => 'cqu', 'AUR62033575' => 'cqu', 'BcaB03g12335' => 'bca', 'BcaB03g15533' => 'bca', 'BcaB04g19220' => 'bca', 'BcaC01g00394' => 'bca', 'BcaC01g04321' => 'bca', 'BcaC05g30063' => 'bca', 'BcaC05g30064' => 'bca', 'BcaC08g45837' => 'bca', 'BcaNung02072' => 'bca', 'BcaNung02075' => 'bca', 'BcaNung02077' => 'bca', 'BolC1t00148H' => 'bol', 'BolC3t16477H' => 'bol', 'BolC3t20167H' => 'bol', 'BolC5t34781H' => 'bol', 'BolC6t38745H' => 'bol', 'BolC7t46594H' => 'bol', 'BolC7t46669H' => 'bol', 'BraA03t12625Z' => 'bra', 'BraA03t15494Z' => 'bra', 'BraA03t15596Z' => 'bra', 'BraA05t22918Z' => 'bra', 'BraA07t30752Z' => 'bra', 'BraA08t34241Z' => 'bra', 'C01p01510' => 'bna', 'C03p41940' => 'bna', 'C05p61210' => 'bna', 'C06p36240' => 'bna', 'C07p61690' => 'bna', 'C07p62540' => 'bna', 'CAN.G1075.42' => 'can', 'CAN.G1492.7' => 'can', 'CAN.G206.220' => 'can', 'CAN.G397.75' => 'can', 'CAN.G439.33' => 'can', 'CAN.G678.14' => 'can', 'CANSAT01G1841' => 'cansat', 'CANSAT01G3018' => 'cansat', 'CANSAT80G0830' => 'cansat', 'CANSAT80G1509' => 'cansat', 'CARHR063310' => 'chi', 'CARHR080540' => 'chi', 'CARHR244750' => 'chi', 'CARHR246050' => 'chi', 'Carub.0002s1688' => 'cru', 'Carub.0003s0547' => 'cru', 'Carub.0005s0196' => 'cru', 'Carub.0007s0261' => 'cru', 'Carub.0007s0389' => 'cru', 'Ca_00920_v3' => 'car', 'Ca_00925_v3' => 'car', 'Ca_03176_v3' => 'car', 'Ca_07501_v3' => 'car', 'Ca_11268_v3' => 'car', 'CBR_g2871' => 'cbr', 'Cc00_g05000' => 'ccan', 'Cc00_g05010' => 'ccan', 'Cc00_g05020' => 'ccan', 'Cc07_g10100' => 'ccan', 'Cc09_g05760' => 'ccan', 'Cc11_g12810' => 'ccan', 'CDE02G1704' => 'cde', 'CDE05G0428' => 'cde', 'Cfa000678' => 'cfa', 'Cfa004136' => 'cfa', 'Cfa019137' => 'cfa', 'Ciclev10012849m.g' => 'ccl', 'Ciclev10016633m.g' => 'ccl', 'Ciclev10026576m.g' => 'ccl', 'Ciclev10026634m.g' => 'ccl', 'CiPaw.01G004300' => 'cil', 'CiPaw.07G053000' => 'cil', 'CiPaw.09G074700' => 'cil', 'CiPaw.10G062700' => 'cil', 'CiPaw.11G025700' => 'cil', 'ClCG01G017620' => 'cla', 'ClCG01G019960' => 'cla', 'ClCG03G004220' => 'cla', 'ClCG06G015740' => 'cla', 'ClCG07G016250' => 'cla', 'COL.COLO4_11582' => 'col', 'COL.COLO4_17636' => 'col', 'COL.COLO4_22000' => 'col', 'COL.COLO4_30043' => 'col', 'COL.COLO4_30227' => 'col', 'COL.COLO4_30231' => 'col', 'Cpa.g.c45949' => 'cpa', 'Cpa.g.sc153.25' => 'cpa', 'Cpa.g.sc286.9' => 'cpa', 'Cpa.g.sc33.37' => 'cpa', 'Cpa.g.sc6.11' => 'cpa', 'Cpa.g.sc6.182' => 'cpa', 'Cre06.g293700' => 'cre', 'CsaV3_1G010160' => 'csa', 'CsaV3_3G028630' => 'csa', 'CsaV3_6G044160' => 'csa', 'CsaV3_6G046720' => 'csa', 'CSS0002792' => 'camsi', 'CSS0013566' => 'camsi', 'CSS0016934' => 'camsi', 'CSS0023118' => 'camsi', 'CSS0047861' => 'camsi', 'DCAR_000070' => 'dca', 'DCAR_001292' => 'dca', 'DCAR_004338' => 'dca', 'DCAR_024217' => 'dca', 'DCAR_025801' => 'dca', 'DCAR_025975' => 'dca', 'DCAR_026138' => 'dca', 'DCAR_030083' => 'dca', 'Dinv04043' => 'din', 'Dinv13838' => 'din', 'Dinv17478' => 'din', 'Dinv20649' => 'din', 'Dinv26936' => 'din', 'Dinv40032' => 'din', 'Duzib132G0565' => 'dzi', 'Duzib147G0140' => 'dzi', 'Duzib147G0485' => 'dzi', 'Duzib187G1810' => 'dzi', 'Duzib205G0148' => 'dzi', 'Duzib248G0830' => 'dzi', 'Duzib264G0887' => 'dzi', 'Duzib264G0950' => 'dzi', 'ECA232G2449' => 'eca', 'ECA234G3166' => 'eca', 'ECA238G1178' => 'eca', 'ECA246G0236' => 'eca', 'ECA247G0150' => 'eca', 'EL10Ac1g00191' => 'bvu', 'EL10Ac3g06332' => 'bvu', 'EL10Ac5g10741' => 'bvu', 'EL10Ac9g22855' => 'bvu', 'Eucgr.D02092' => 'egr', 'Eucgr.E04306' => 'egr', 'Eucgr.H02311' => 'egr', 'FAN04G0454' => 'fan', 'FAN04G1980' => 'fan', 'FAN08G0627' => 'fan', 'FAN08G3317' => 'fan', 'FAN11G3550' => 'fan', 'FAN13G2117' => 'fan', 'FAN13G3194' => 'fan', 'FAN15G1597' => 'fan', 'FAN16G2237' => 'fan', 'FAN18G0573' => 'fan', 'FAN18G0963' => 'fan', 'FAN18G2375' => 'fan', 'FAN19G0589' => 'fan', 'FAN19G1670' => 'fan', 'FAN20G0933' => 'fan', 'FAN21G1329' => 'fan', 'FAN23G1548' => 'fan', 'FAN24G2926' => 'fan', 'FAN24G2997' => 'fan', 'FAN25G1424' => 'fan', 'FAN26G1210' => 'fan', 'FAN28G0357' => 'fan', 'FAN28G1657' => 'fan', 'FAN28G2681' => 'fan', 'FvH4_1g12480' => 'fve', 'FvH4_2g11030' => 'fve', 'FvH4_3g12640' => 'fve', 'FvH4_5g04711' => 'fve', 'FvH4_5g05340' => 'fve', 'FvH4_5g26350' => 'fve', 'Glyma.02G052600' => 'gma', 'Glyma.08G164000' => 'gma', 'Glyma.09G029000' => 'gma', 'Glyma.13G077100' => 'gma', 'Glyma.15G134800' => 'gma', 'Glyma.15G263200' => 'gma', 'Glyma.20G052800' => 'gma', 'Gohir.A03G217800' => 'ghi', 'Gohir.A10G089600' => 'ghi', 'Gohir.A11G181200' => 'ghi', 'Gohir.A12G274300' => 'ghi', 'Gohir.D02G239800' => 'ghi', 'Gohir.D10G098500' => 'ghi', 'Gohir.D10G167100' => 'ghi', 'Gohir.D11G187700' => 'ghi', 'Gohir.D12G275000' => 'ghi', 'Gorai.005G268200' => 'gra', 'Gorai.007G199600' => 'gra', 'Gorai.008G295500' => 'gra', 'Gorai.011G108200' => 'gra', 'Gorai.011G186400' => 'gra', 'GSVIVG01007737001' => 'vvi', 'GSVIVG01012121001' => 'vvi', 'HanXRQChr05g0156251' => 'han', 'HanXRQChr07g0190371' => 'han', 'HanXRQChr07g0196421' => 'han', 'HanXRQChr08g0231921' => 'han', 'HanXRQChr12g0355891' => 'han', 'HanXRQChr14g0445281' => 'han', 'HanXRQChr16g0522361' => 'han', 'Haze_03841' => 'cav', 'Haze_06140' => 'cav', 'Haze_07504' => 'cav', 'Haze_15278' => 'cav', 'Haze_26791' => 'cav', 'Hma1.2p1_0176F.1_g077370' => 'hma', 'Hma1.2p1_0327F.1_g126500' => 'hma', 'Hma1.2p1_0701F.1_g205880' => 'hma', 'Hma1.2p1_0852F.1_g228590' => 'hma', 'Hma1.2p1_0913F.1_g235980' => 'hma', 'Hma1.2p1_2409F.1_g321500' => 'hma', 'HPP92_008592' => 'vpl', 'HPP92_021567' => 'vpl', 'HPP92_027134' => 'vpl', 'HPP92_027258' => 'vpl', 'Hund08877' => 'sun', 'Lalb_Chr01g0015551' => 'lal', 'Lalb_Chr09g0333401' => 'lal', 'Lalb_Chr16g0391001' => 'lal', 'Lalb_Chr18g0058261' => 'lal', 'Lalb_Chr18g0058311' => 'lal', 'Lalb_Chr25g0284381' => 'lal', 'Lj1P1147T19' => 'lonja', 'Lj3g0004919' => 'lja', 'Lj4g0026319' => 'lja', 'Lj4P210T17' => 'lonja', 'Lj5E124G2' => 'lonja', 'Lj5P124T52' => 'lonja', 'Lj6g0004694' => 'lja', 'Lj6g0014938' => 'lja', 'Lj7P99T29' => 'lonja', 'Lju470C11T7' => 'lonja', 'Lsat_1_v5_gn_2_78060' => 'lsa', 'Lsat_1_v5_gn_4_161541' => 'lsa', 'Lsat_1_v5_gn_5_14700' => 'lsa', 'Lsat_1_v5_gn_5_99221' => 'lsa', 'Lsat_1_v5_gn_8_95040' => 'lsa', 'Manes.01G140300' => 'mes', 'Manes.02G098500' => 'mes', 'Manes.03G074200' => 'mes', 'Manes.06G105200' => 'mes', 'Manes.13G111200' => 'mes', 'Manes.14G065500' => 'mes', 'Mapoly0065s0065' => 'mpo', 'MBI02_g37836_MAGBIO' => 'mbi', 'MBI05_g28544_MAGBIO' => 'mbi', 'MBI10_g06740_MAGBIO' => 'mbi', 'MBI11_g32385_MAGBIO' => 'mbi', 'MBI13_g20251_MAGBIO' => 'mbi', 'MCO03G603' => 'mco', 'MCO16G455' => 'mco', 'MD02G1138800' => 'mdo', 'MD02G1139200' => 'mdo', 'MD04G1041700' => 'mdo', 'MD05G1040200' => 'mdo', 'MD05G1249000' => 'mdo', 'MD06G1173500' => 'mdo', 'MD10G1046200' => 'mdo', 'MD10G1229600' => 'mdo', 'MD14G1180000' => 'mdo', 'MD15G1252100' => 'mdo', 'Medtr2g031760' => 'mtr', 'Medtr2g031960' => 'mtr', 'Medtr2g064300' => 'mtr', 'Medtr7g053520' => 'mtr', 'Medtr8g076780' => 'mtr', 'MELO3C002405.2' => 'cme', 'MELO3C003920.2' => 'cme', 'MELO3C007639.2' => 'cme', 'MELO3C007869.2' => 'cme', 'MELO3C011871.2' => 'cme', 'MELO3C034168.2' => 'cme', 'Migut.D01470' => 'egut', 'Migut.H00300' => 'egut', 'Migut.H02508' => 'egut', 'Migut.N00989' => 'egut', 'Migut.N00990' => 'egut', 'Migut.N01934' => 'egut', 'MSTRG.17770' => 'ama', 'MSTRG.23261' => 'ama', 'MSTRG.7600' => 'ama', 'Nitab4.5_0000073g0570' => 'nta', 'Nitab4.5_0000138g0090' => 'nta', 'Nitab4.5_0000142g0110' => 'nta', 'Nitab4.5_0000723g0100' => 'nta', 'Nitab4.5_0001875g0090' => 'nta', 'Nitab4.5_0002015g0010' => 'nta', 'Nitab4.5_0004025g0030' => 'nta', 'Nitab4.5_0004708g0040' => 'nta', 'Nitab4.5_0005023g0040' => 'nta', 'Nitab4.5_0008618g0010' => 'nta', 'Nn4g22755' => 'nnu', 'Nn4g24689' => 'nnu', 'Nn5g29714' => 'nnu', 'Nn5g30607' => 'nnu', 'Oeu002030.1' => 'oeu', 'Oeu011985.1' => 'oeu', 'Oeu018077.1' => 'oeu', 'Oeu018233.1' => 'oeu', 'Oeu032424.1' => 'oeu', 'Oeu056050.1' => 'oeu', 'Oeu058940.1' => 'oeu', 'Os02g0198900' => 'osa', 'Os03g0734400' => 'osa', 'Os05g0554100' => 'osa', 'Os07g0626100' => 'osa', 'Peaxi162Scf00047g02423' => 'pax', 'Peaxi162Scf00198g00103' => 'pax', 'Peaxi162Scf00241g10022' => 'pax', 'Peaxi162Scf00548g00057' => 'pax', 'Peaxi162Scf00556g00055' => 'pax', 'PGR042G0243' => 'pgr', 'PGR102G0269' => 'pgr', 'PGR102G1158' => 'pgr', 'PGR119G0889' => 'pgr', 'PGR119G1972' => 'pgr', 'PGSC0003DMG400001451' => 'stu', 'PGSC0003DMG400008867' => 'stu', 'PGSC0003DMG400014931' => 'stu', 'PGSC0003DMG400018715' => 'stu', 'PGSC0003DMG400021441' => 'stu', 'Phvul.002G273000' => 'pvu', 'Phvul.003G257500' => 'pvu', 'Phvul.005G074800' => 'pvu', 'Phvul.006G021600' => 'pvu', 'Phvul.006G124100' => 'pvu', 'Phvul.007G244500' => 'pvu', 'Potri.003G074800' => 'ptr', 'Potri.004G224300' => 'ptr', 'Potri.007G019100' => 'ptr', 'Potri.015G077200' => 'ptr', 'Pp3c12_17640' => 'ppa', 'Pp3c19_21200' => 'ppa', 'Pp3c21_6760' => 'ppa', 'Pp3c3_26860' => 'ppa', 'PRCOL_00003541' => 'pco', 'Prupe.1G195400' => 'ppe', 'Prupe.4G115200' => 'ppe', 'Prupe.5G173000' => 'ppe', 'Prupe.7G162000' => 'ppe', 'Prupe.8G053900' => 'ppe', 'Prupe.8G072700' => 'ppe', 'Psat1g015120' => 'psa', 'Psat1g164400' => 'psa', 'Psat1g164640' => 'psa', 'Psat3g150240' => 'psa', 'Psat4g096320' => 'psa', 'PSO063G4759' => 'pso', 'PSO339G1229' => 'pso', 'PSO339G3237' => 'pso', 'PSO384G4181' => 'pso', 'PSO384G4824' => 'pso', 'PSO541G0283' => 'pso', 'PSO541G0845' => 'pso', 'PSO675G0077' => 'pso', 'PSO675G7370' => 'pso', 'PSO832G3715' => 'pso', 'QL06p039532' => 'qlo', 'QL07p045230' => 'qlo', 'QL08p056981' => 'qlo', 'QL10p007541' => 'qlo', 'QL10p015865' => 'qlo', 'QL11p013638' => 'qlo', 'RcHm_v2.0_Chr2g0100351' => 'rch', 'RcHm_v2.0_Chr5g0020611' => 'rch', 'RcHm_v2.0_Chr6g0269241' => 'rch', 'RcHm_v2.0_Chr7g0193501' => 'rch', 'RcHm_v2.0_Chr7g0217101' => 'rch', 'RcHm_v2.0_Chr7g0217161' => 'rch', 'Rhsim03G0068400' => 'rsi', 'Rhsim06G0063500' => 'rsi', 'Rhsim08G0093100' => 'rsi', 'Rhsim08G0172700' => 'rsi', 'Rhsim08G0172800' => 'rsi', 'Sabra01G0170400' => 'sbr', 'Sabra03G0045500' => 'sbr', 'Sabra07G0016400' => 'sbr', 'Sabra12G0058200' => 'sbr', 'Sabra15G0101900' => 'sbr', 'SalBow3G1888' => 'sbo', 'SalBow3G2897' => 'sbo', 'SalBow4G2558' => 'sbo', 'SalBow6G0603' => 'sbo', 'SalBow6G4805' => 'sbo', 'SalBow6G5516' => 'sbo', 'SalBow8G3047' => 'sbo', 'SalBow8G3377' => 'sbo', 'SalBow8G4176' => 'sbo', 'Sc01g0002240' => 'sci', 'Sc03g0003230' => 'sci', 'Sc05g0004740' => 'sci', 'Sc12g0005310' => 'sci', 'Sed0004231' => 'sed', 'Sed0005290' => 'sed', 'Sed0005933' => 'sed', 'Sed0013334' => 'sed', 'Sed0013751' => 'sed', 'Sed0024267' => 'sed', 'SEGI_08694' => 'sgi', 'SEGI_09069' => 'sgi', 'SEGI_12175' => 'sgi', 'SEGI_23469' => 'sgi', 'SEGI_36105' => 'sgi', 'SGA_v2.0_scaffold51G18801' => 'sas', 'SGA_v2.0_scaffold62G21596' => 'sas', 'SGA_v2.0_scaffold72G24071' => 'sas', 'SHI08615' => 'shi', 'SHI16975' => 'shi', 'SMO270G0043' => 'smo', 'Solyc02g031970.1' => 'sly', 'Solyc02g088760.2' => 'sly', 'Solyc02g092300.1' => 'sly', 'Solyc09g010030.3' => 'sly', 'Solyc11g071530.1' => 'sly', 'Sopen02g010230' => 'spe', 'Sopen02g033470' => 'spe', 'Sopen02g036870' => 'spe', 'Sopen09g004770' => 'spe', 'Sopen11g029220' => 'spe', 'Sp3g04990' => 'spa', 'Sp5g25310' => 'spa', 'Sp6g12180' => 'spa', 'Sp7g34080' => 'spa', 'Sp7g35310' => 'spa', 'TAR371G0150' => 'tar', 'TAR376G0630' => 'tar', 'TAR381G0864' => 'tar', 'TAR622G0652' => 'tar', 'TAR626G0967' => 'tar', 'TAR627G0190' => 'tar', 'TAR627G0865' => 'tar', 'THA.LOC104802756' => 'tha', 'THA.LOC104807473' => 'tha', 'THA.LOC104811737' => 'tha', 'THA.LOC104822304' => 'tha', 'Thecc.01G027100' => 'tca', 'Thecc.01G073200' => 'tca', 'Thecc.02G006100' => 'tca', 'Thecc.03G013100' => 'tca', 'Thhalv10019124m.g' => 'esa', 'Thhalv10021590m.g' => 'esa', 'Thhalv10026420m.g' => 'esa', 'Thhalv10026763m.g' => 'esa', 'Thhalv10027419m.g' => 'esa', 'TPR.G21534' => 'tpr', 'TPR.G28435' => 'tpr', 'TPR.G29154' => 'tpr', 'TPR.G8028' => 'tpr', 'TPR.G8034' => 'tpr', 'TWI14G1176' => 'twi', 'TWI15G0681' => 'twi', 'TWI38G0313' => 'twi', 'TWI39G0852' => 'twi', 'TWI59G0342' => 'twi', 'TWI73G1286' => 'twi', 'unitig_26.g10136' => 'ugi', 'unitig_32.g10997' => 'ugi', 'unitig_37.g12051' => 'ugi', 'unitig_899.g14636' => 'ugi', 'unitig_92.g28191' => 'ugi', 'vmacro19392' => 'vma', 'vmacro22282' => 'vma', 'VMungo0251G0891' => 'vmu', 'VMungo0540G0215' => 'vmu', 'VMungo0647G0911' => 'vmu', 'VMungo1080G1379' => 'vmu', 'Zm00001eb205850' => 'zma', 'Zm00001eb215450' => 'zma', 'Zm00001eb235930' => 'zma', 'Zm00001eb295090' => 'zma', 'Zm00001eb327950' => 'zma', 'Zm00001eb343100' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001156' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001156' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001156' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001156' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151