Gene: Rhsim08G0172700
General Information
Structural Information
- Species Rhododendron simsii
- Gene Identifier Rhsim08G0172700
- Transcript Identifier Rhsim08G0172700.1
- Gene Type Coding gene
- Location chr08 : 25909683-25917892 : positive
Gene Family Information
- ID HOM05D001156
- #Genes/#Species 534/99
- Phylogenetic origin
- ID ORTHO05D000024
- #Genes/#Species 3751/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Rhsim08G0172700.1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010087 | ISO | PLAZA Integrative Orthology | phloem or xylem histogenesis | AT5G62940 |
| GO:0048825 | ISO | PLAZA Integrative Orthology | cotyledon development | AT4G21030 |
| GO:0010067 | ISO | PLAZA Integrative Orthology | procambium histogenesis | AT5G62940 |
| GO:0048359 | ISO | PLAZA Integrative Orthology | mucilage metabolic process involved in seed coat development | AT4G21030 |
| GO:0010214 | ISO | PLAZA Integrative Orthology | seed coat development | AT4G21030 |
| GO:0090057 | ISO | PLAZA Integrative Orthology | root radial pattern formation | AT5G62940 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT4G21030 |
| GO:2000032 | ISO | PLAZA Integrative Orthology | regulation of secondary shoot formation | AT4G21030 |
| GO:0006412 | IEA | InterPro | translation | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT4G21030 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT5G62940 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003700 | ISO | PLAZA Integrative Orthology | DNA-binding transcription factor activity | AT5G62940 |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G21030 |
| GO:0005840 | IEA | InterPro | ribosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003851 | Zinc finger, Dof-type |
| IPR001878 | Zinc finger, CCHC-type |
| IPR013823 | Ribosomal protein L7/L12, C-terminal |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR014719 | Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like |
| IPR000206 | Ribosomal protein L7/L12 |
| Mapman id | Description |
|---|---|
| 15.5.1.5 | RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF) |
| 17.7.1.1.8 | Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL7/L12 |