Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24260 Nelumbo nucifera HOM05D002276 ORTHO05D002381 1.0e-118 430.3 246 100.0
Nn2g10273 Nelumbo nucifera HOM05D002276 ORTHO05D002381 1.6e-47 193.7 135 97.0
Nn5g26830 Nelumbo nucifera HOM05D002276 ORTHO05D002381 3.5e-26 122.9 159 57.2
CsaV3_6G002370 Cucumis sativus L. HOM05D002276 ORTHO05D002381 8.4e-20 101.7 104 55.8
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 8.4e-20 101.7 167 54.5
MELO3C020014.2 Cucumis melo HOM05D002276 ORTHO05D002381 2.4e-19 100.1 104 54.8
ClCG11G005630 Citrullus lanatus HOM05D002276 ORTHO05D002381 7.1e-19 98.6 104 53.8
Cfa001198 Carpinus fangiana HOM05D002276 ORTHO05D002381 2.1e-18 97.1 181 44.8
Manes.08G170400 Manihot esculenta HOM05D002276 ORTHO05D002381 2.7e-18 96.7 91 57.1
PSO384G2188 Papaver somniferum HOM05D002276 ORTHO05D002381 6.0e-18 95.5 85 57.6
Sed0009415 Sechium edule HOM05D002276 ORTHO05D002381 6.0e-18 95.5 104 51.0
HanXRQChr14g0460591 Helianthus annuus HOM05D002276 ORTHO05D002381 7.9e-18 95.1 109 47.7
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 1.0e-17 94.7 72 65.3
GSVIVG01032658001 Vitis vinifera HOM05D002276 ORTHO05D002381 1.0e-17 94.7 99 51.5
PSO339G3554 Papaver somniferum HOM05D002276 ORTHO05D002381 1.3e-17 94.4 83 57.8
TAR369G0520 Trochodendron aralioides HOM05D002276 ORTHO05D002381 1.3e-17 94.4 93 54.8
CiPaw.01G307200 Carya illinoinensis HOM05D002276 ORTHO05D002381 1.8e-17 94.0 172 39.0
Lj8C53T13 Lonicera japonica HOM05D002276 ORTHO05D002381 2.3e-17 93.6 76 60.5
Ciclev10011982m.g Citrus clementina HOM05D002276 ORTHO05D002381 3.0e-17 93.2 75 58.7
Cpa.g.sc86.75 Carica papaya HOM05D002276 ORTHO05D002381 5.1e-17 92.4 75 60.0
Haze_17367 Corylus avellana HOM05D002276 ORTHO05D002381 8.7e-17 91.7 94 53.2
Lj1C968T6 Lonicera japonica HOM05D002276 ORTHO05D002381 4.3e-16 89.4 106 48.1
TWI53G2065 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 4.3e-16 89.4 90 50.0
Dinv16968 Davidia involucrata HOM05D002276 ORTHO05D002381 5.6e-16 89.0 187 49.2
Sabra06G0085000 Salix brachista HOM05D002276 ORTHO05D002381 5.6e-16 89.0 90 52.2
MBI03_g05806_MAGBIO Magnolia biondii HOM05D002276 ORTHO05D002381 1.3e-15 87.8 108 50.0
Potri.016G138100 Populus trichocarpa HOM05D002276 ORTHO05D002381 1.3e-15 87.8 166 48.2
THA.LOC104806195 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 1.6e-15 87.4 75 56.0
QL08p065059 Quercus lobata HOM05D002276 ORTHO05D002381 2.8e-15 86.7 96 52.1
Nitab4.5_0000171g0260 Nicotiana tabacum HOM05D002276 ORTHO05D002381 3.6e-15 86.3 111 45.9
Nitab4.5_0006356g0040 Nicotiana tabacum HOM05D002276 ORTHO05D002381 3.6e-15 86.3 111 45.9
Potri.006G109300 Populus trichocarpa HOM05D002276 ORTHO05D002381 3.6e-15 86.3 89 50.6
Sopen05g030730 Solanum pennellii HOM05D002276 ORTHO05D002381 3.6e-15 86.3 127 42.5
Aqoxy4G03275 Aquilegia oxysepala HOM05D002276 ORTHO05D002381 4.8e-15 85.9 87 51.7
HanXRQChr09g0252621 Helianthus annuus HOM05D002276 ORTHO05D002381 6.2e-15 85.5 84 51.2
Peaxi162Scf00073g02341 Petunia axillaris HOM05D002276 ORTHO05D002381 8.1e-15 85.1 105 47.6
ATR1127G212 Amborella trichopoda HOM05D002276 ORTHO05D002381 1.1e-14 84.7 112 48.2
CAN.G598.16 Capsicum annuum HOM05D002276 ORTHO05D002381 1.1e-14 84.7 111 45.9
Gohir.D10G112700 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.4e-14 84.3 71 59.2
Gorai.011G124500 Gossypium raimondii HOM05D002276 ORTHO05D002381 1.4e-14 84.3 71 59.2
Solyc05g052190.4 Solanum lycopersicum HOM05D002276 ORTHO05D002381 1.4e-14 84.3 127 41.7
THA.LOC104823349 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 1.8e-14 84.0 105 44.8
CAN.G1229.11 Capsicum annuum HOM05D002276 ORTHO05D002381 3.1e-14 83.2 111 44.1
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 3.1e-14 83.2 113 46.0
ECA238G3222 Erigeron canadensis HOM05D002276 ORTHO05D002381 5.3e-14 82.4 84 51.2
Lalb_Chr08g0239251 Lupinus albus HOM05D002276 ORTHO05D002381 5.3e-14 82.4 109 46.8
Actinidia31634 Actinidia chinensis HOM05D002276 ORTHO05D002381 6.9e-14 82.0 103 44.7
Gohir.A10G153500 Gossypium hirsutum HOM05D002276 ORTHO05D002381 6.9e-14 82.0 78 55.1
Hma1.2p1_0174F.1_g076750 Hydrangea macrophylla HOM05D002276 ORTHO05D002381 6.9e-14 82.0 102 47.1
Ah.05g171950 Amaranthus hybridus HOM05D002276 ORTHO05D002381 9.0e-14 81.6 116 43.1
Solyc03g095720.3 Solanum lycopersicum HOM05D002276 ORTHO05D002381 9.0e-14 81.6 105 45.7
Sopen03g025650 Solanum pennellii HOM05D002276 ORTHO05D002381 9.0e-14 81.6 105 45.7
TWI77G0614 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 9.0e-14 81.6 168 41.7
Nitab4.5_0011372g0010 Nicotiana tabacum HOM05D002276 ORTHO05D002381 1.5e-13 80.9 111 44.1
Atru.chr8.94 Acer truncatum HOM05D002276 ORTHO05D002381 2.0e-13 80.5 90 50.0
DCAR_018043 Daucus carota HOM05D002276 ORTHO05D002381 2.0e-13 80.5 103 46.6
DCAR_020154 Daucus carota HOM05D002276 ORTHO05D002381 2.0e-13 80.5 109 43.1
HanXRQChr07g0205051 Helianthus annuus HOM05D002276 ORTHO05D002381 2.0e-13 80.5 79 49.4
HanXRQChr08g0216851 Helianthus annuus HOM05D002276 ORTHO05D002381 2.0e-13 80.5 79 49.4
Peaxi162Scf00167g01124 Petunia axillaris HOM05D002276 ORTHO05D002381 2.0e-13 80.5 105 44.8
Sabra04G0154300 Salix brachista HOM05D002276 ORTHO05D002381 2.0e-13 80.5 145 51.0
Sc14g0005650 Simmondsia chinensis HOM05D002276 ORTHO05D002381 2.0e-13 80.5 84 50.0
Nitab4.5_0000375g0290 Nicotiana tabacum HOM05D002276 ORTHO05D002381 2.6e-13 80.1 111 43.2
Aa31LG5G23370 Aethionema arabicum HOM05D002276 ORTHO05D002381 3.4e-13 79.7 158 33.5
ECA232G0035 Erigeron canadensis HOM05D002276 ORTHO05D002381 3.4e-13 79.7 89 47.2
arahy.Tifrunner.gnm1.ann1.AB1T8P Arachis hypogaea HOM05D002276 ORTHO05D002381 4.5e-13 79.3 145 37.9
PGSC0003DMG400011644 Solanum tuberosum HOM05D002276 ORTHO05D002381 4.5e-13 79.3 114 43.9
Duzib151G1136 Durio zibethinus HOM05D002276 ORTHO05D002381 5.8e-13 79.0 79 50.6
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 5.8e-13 79.0 73 53.4
CiPaw.02G199100 Carya illinoinensis HOM05D002276 ORTHO05D002381 7.6e-13 78.6 157 36.3
COL.COLO4_03929 Corchorus olitorius HOM05D002276 ORTHO05D002381 7.6e-13 78.6 65 56.9
Lsat_1_v5_gn_2_126800 Lactuca sativa HOM05D002276 ORTHO05D002381 7.6e-13 78.6 72 52.8
Sp4g20900 Schrenkiella parvula HOM05D002276 ORTHO05D002381 9.9e-13 78.2 111 47.7
GSVIVG01030171001 Vitis vinifera HOM05D002276 ORTHO05D002381 9.9e-13 78.2 108 47.2
Cc02_g05240 Coffea canephora HOM05D002276 ORTHO05D002381 1.3e-12 77.8 94 41.5
Gorai.006G235600 Gossypium raimondii HOM05D002276 ORTHO05D002381 1.3e-12 77.8 189 31.7
MD01G1169100 Malus domestica HOM05D002276 ORTHO05D002381 1.3e-12 77.8 75 52.0
Os03g0815900 Oryza sativa ssp. japonica HOM05D002276 ORTHO05D002381 1.3e-12 77.8 172 34.3
Gohir.A09G213664 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.7e-12 77.4 189 31.7
RcHm_v2.0_Chr1g0372471 Rosa chinensis HOM05D002276 ORTHO05D002381 1.7e-12 77.4 98 48.0
TPR.G13982 Trifolium pratense HOM05D002276 ORTHO05D002381 1.7e-12 77.4 98 45.9
AUR62023758 Chenopodium quinoa HOM05D002276 ORTHO05D002381 2.2e-12 77.0 114 43.9
Migut.F00569 Erythranthe guttata HOM05D002276 ORTHO05D002381 2.2e-12 77.0 97 39.2
Gohir.D09G215100 Gossypium hirsutum HOM05D002276 ORTHO05D002381 2.2e-12 77.0 189 31.7
Prupe.2G265300 Prunus persica HOM05D002276 ORTHO05D002381 2.9e-12 76.6 88 48.9
Eucgr.A00774 Eucalyptus grandis HOM05D002276 ORTHO05D002381 3.8e-12 76.3 104 43.3
FAN01G0935 Fragaria x ananassa HOM05D002276 ORTHO05D002381 3.8e-12 76.3 97 44.3
DCAR_025300 Daucus carota HOM05D002276 ORTHO05D002381 4.9e-12 75.9 104 43.3
FvH4_7g26060 Fragaria vesca HOM05D002276 ORTHO05D002381 4.9e-12 75.9 97 44.3
FAN03G1243 Fragaria x ananassa HOM05D002276 ORTHO05D002381 4.9e-12 75.9 97 44.3
Medtr3g093800 Medicago truncatula HOM05D002276 ORTHO05D002381 4.9e-12 75.9 98 45.9
FAN06G2672 Fragaria x ananassa HOM05D002276 ORTHO05D002381 6.4e-12 75.5 110 40.9
FAN10G4373 Fragaria x ananassa HOM05D002276 ORTHO05D002381 6.4e-12 75.5 97 44.3
Thecc.04G150200 Theobroma cacao HOM05D002276 ORTHO05D002381 6.4e-12 75.5 65 53.8
Thecc.10G184700 Theobroma cacao HOM05D002276 ORTHO05D002381 6.4e-12 75.5 116 39.7
Zm00001eb440670 Zea mays HOM05D002276 ORTHO05D002381 6.4e-12 75.5 101 50.5
AUR62002430 Chenopodium quinoa HOM05D002276 ORTHO05D002381 8.4e-12 75.1 112 43.8
Glyma.06G141700 Glycine max HOM05D002276 ORTHO05D002381 8.4e-12 75.1 71 53.5
VMungo1309G1834 Vigna mungo HOM05D002276 ORTHO05D002381 8.4e-12 75.1 104 43.3
CANSAT56G0568 Cannabis sativa HOM05D002276 ORTHO05D002381 1.1e-11 74.7 80 51.2
COL.COLO4_19469 Corchorus olitorius HOM05D002276 ORTHO05D002381 1.1e-11 74.7 100 39.0
Lj1g0009031 Lotus japonicus HOM05D002276 ORTHO05D002381 1.4e-11 74.3 92 45.7
PGSC0003DMG400020602 Solanum tuberosum HOM05D002276 ORTHO05D002381 1.4e-11 74.3 108 41.7
Lalb_Chr11g0067721 Lupinus albus HOM05D002276 ORTHO05D002381 1.9e-11 73.9 91 47.3
arahy.Tifrunner.gnm1.ann1.XP7Q91 Arachis hypogaea HOM05D002276 ORTHO05D002381 4.2e-11 72.8 122 41.0
BcaB01g03676 Brassica carinata HOM05D002276 ORTHO05D002381 4.2e-11 72.8 109 45.9
Psat5g069320 Pisum sativum HOM05D002276 ORTHO05D002381 4.2e-11 72.8 92 45.7
AT2G38560 Arabidopsis thaliana HOM05D002276 ORTHO05D002381 5.5e-11 72.4 96 49.0
EL10Ac3g06123 Beta vulgaris HOM05D002276 ORTHO05D002381 7.1e-11 72.0 87 47.1
MBI15_g39393_MAGBIO Magnolia biondii HOM05D002276 ORTHO05D002381 7.1e-11 72.0 119 41.2
MSTRG.8876 Avicennia marina HOM05D002276 ORTHO05D002381 9.3e-11 71.6 98 39.8
unitig_46.g18751 Utricularia gibba HOM05D002276 ORTHO05D002381 9.3e-11 71.6 115 36.5
Carub.0004s2055 Capsella rubella HOM05D002276 ORTHO05D002381 1.2e-10 71.2 113 43.4
Glyma.04G223500 Glycine max HOM05D002276 ORTHO05D002381 1.2e-10 71.2 80 45.0
MD07G1235000 Malus domestica HOM05D002276 ORTHO05D002381 1.2e-10 71.2 88 44.3
Lsat_1_v5_gn_9_60240 Lactuca sativa HOM05D002276 ORTHO05D002381 1.6e-10 70.9 95 40.0
Ca_16859_v3 Cicer arietinum L. HOM05D002276 ORTHO05D002381 2.7e-10 70.1 88 45.5
Ca_29507_v3 Cicer arietinum L. HOM05D002276 ORTHO05D002381 2.7e-10 70.1 88 45.5
Phvul.009G042900 Phaseolus vulgaris HOM05D002276 ORTHO05D002381 2.7e-10 70.1 80 43.8
Eucgr.J00105 Eucalyptus grandis HOM05D002276 ORTHO05D002381 4.6e-10 69.3 86 45.3
Lalb_Chr23g0272141 Lupinus albus HOM05D002276 ORTHO05D002381 4.6e-10 69.3 97 44.3
AL4G35840 Arabidopsis lyrata HOM05D002276 ORTHO05D002381 7.9e-10 68.6 111 42.3
Thhalv10016682m.g Eutrema salsugineum HOM05D002276 ORTHO05D002381 7.9e-10 68.6 100 41.0
Manes.10G002900 Manihot esculenta HOM05D002276 ORTHO05D002381 7.9e-10 68.6 119 35.3
Hund22971 Selenicereus undatus HOM05D002276 ORTHO05D002381 7.9e-10 68.6 63 50.8
CDE04G3441 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 1.0e-09 68.2 73 50.7
Gohir.D02G003200 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.0e-09 68.2 86 41.9
Gorai.005G003700 Gossypium raimondii HOM05D002276 ORTHO05D002381 1.0e-09 68.2 86 41.9
Os07g0229700 Oryza sativa ssp. japonica HOM05D002276 ORTHO05D002381 1.0e-09 68.2 91 47.3
CARHR133240 Cardamine hirsuta HOM05D002276 ORTHO05D002381 1.3e-09 67.8 109 41.3
BcaB02g09184 Brassica carinata HOM05D002276 ORTHO05D002381 2.3e-09 67.0 104 43.3
Zm00001eb062210 Zea mays HOM05D002276 ORTHO05D002381 3.0e-09 66.6 78 55.1
Rhsim04G0121300 Rhododendron simsii HOM05D002276 ORTHO05D002381 3.9e-09 66.2 90 45.6
A03p21380 Brassica napus HOM05D002276 ORTHO05D002381 5.1e-09 65.9 88 45.5
C03p25250 Brassica napus HOM05D002276 ORTHO05D002381 5.1e-09 65.9 88 45.5
BraA03t11373Z Brassica rapa HOM05D002276 ORTHO05D002381 5.1e-09 65.9 80 50.0
CDE04G3210 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 5.1e-09 65.9 87 47.1
CDE12G0219 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 5.1e-09 65.9 61 50.8
Gohir.A02G002850 Gossypium hirsutum HOM05D002276 ORTHO05D002381 6.7e-09 65.5 85 40.0
MSTRG.27253 Avicennia marina HOM05D002276 ORTHO05D002381 8.7e-09 65.1 84 42.9
BcaC02g12009 Brassica carinata HOM05D002276 ORTHO05D002381 1.1e-08 64.7 107 39.3
A05p07490 Brassica napus HOM05D002276 ORTHO05D002381 1.1e-08 64.7 107 39.3
BolC4t22486H Brassica oleracea HOM05D002276 ORTHO05D002381 1.1e-08 64.7 107 39.3
BraA05t19714Z Brassica rapa HOM05D002276 ORTHO05D002381 1.1e-08 64.7 107 39.3
BcaC01g05530 Brassica carinata HOM05D002276 ORTHO05D002381 1.5e-08 64.3 88 42.0
BolC3t14919H Brassica oleracea HOM05D002276 ORTHO05D002381 1.5e-08 64.3 88 42.0
Oeu008104.2 Olea europaea HOM05D002276 ORTHO05D002381 1.5e-08 64.3 105 39.0
unitig_37.g12475 Utricularia gibba HOM05D002276 ORTHO05D002381 1.5e-08 64.3 77 41.6
vmacro08945 Vaccinium macrocarpon HOM05D002276 ORTHO05D002381 1.9e-08 63.9 97 40.2
MBI15_g36065_MAGBIO Magnolia biondii HOM05D002276 ORTHO05D002381 5.6e-08 62.4 68 54.4
Oeu044181.1 Olea europaea HOM05D002276 ORTHO05D002381 5.6e-08 62.4 92 35.9
Actinidia20794 Actinidia chinensis HOM05D002276 ORTHO05D002381 9.6e-08 61.6 88 44.3
C04p08970 Brassica napus HOM05D002276 ORTHO05D002381 9.6e-08 61.6 107 38.3
Rhsim05G0231600 Rhododendron simsii HOM05D002276 ORTHO05D002381 1.6e-07 60.8 68 42.6
PGR044G1486 Punica granatum HOM05D002276 ORTHO05D002381 2.8e-07 60.1 47 59.6
HPP92_022864 Vanilla planifolia HOM05D002276 ORTHO05D002381 2.8e-07 60.1 78 41.0
BcaC01g05531 Brassica carinata HOM05D002276 ORTHO05D002381 3.7e-07 59.7 106 40.6
Atru.chr12.198 Acer truncatum HOM05D002276 ORTHO05D002381 6.2e-07 58.9 106 30.2
vmacro20377 Vaccinium macrocarpon HOM05D002276 ORTHO05D002381 2.4e-06 57.0 91 36.3
TAR381G0853 Trochodendron aralioides HOM05D002276 ORTHO05D002381 9.0e-06 55.1 52 53.8


User provided reference genes

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