Gene: Sopen05g030730

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g030730
  • Transcript Identifier Sopen05g030730.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 74367496-74369516 : negative

Gene Family Information

  • ID HOM05D002276
  • #Genes/#Species 296/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g030730.1

Descriptions

  • Description Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy. | transcript elongation factor IIS (TFIIS) | CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type , Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type , Transcription elongation factor S-II, central domain , Transcription factor IIS, N-terminal , Transcription elongation factor S-IIM , Transcription elongation factor, IIS , Transcription elongation factor, TFIIS , Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal | BEST Arabidopsis thaliana protein match is: F-box family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0010162
ISO
PLAZA Integrative Orthologyseed dormancy process AT2G38560
GO:0009739
ISO
PLAZA Integrative Orthologyresponse to gibberellin AT2G38560
GO:0034243
ISO
PLAZA Integrative Orthologyregulation of transcription elongation from RNA polymerase II promoter AT2G38560
GO:0006355
ISO
PLAZA Homology (enrichment)regulation of transcription, DNA-templated HOM05D002276
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT2G38560
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT2G38560

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D002276
GO:0008270
ISO
PLAZA Homology (enrichment)zinc ion binding HOM05D002276

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003618 Transcription elongation factor S-II, central domain
IPR017923 Transcription factor IIS, N-terminal
IPR035441 TFIIS/LEDGF domain superfamily
IPR036575 Transcription elongation factor S-II, central domain superfamily
IPR035100 Transcription elongation factor, IIS-type
IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
Mapman id Description
35.1 not assigned.annotated