Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22524 Nelumbo nucifera HOM05D000464 ORTHO05D006292 1.9e-290 1001.9 558 100.0
TAR371G0383 Trochodendron aralioides HOM05D000464 ORTHO05D006292 2.8e-204 715.7 509 76.6
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 4.2e-200 701.8 513 69.6
CiPaw.11G014000 Carya illinoinensis HOM05D000464 ORTHO05D006292 8.7e-198 694.1 510 74.3
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 4.3e-197 691.8 509 69.5
Potri.015G087200 Populus trichocarpa HOM05D000464 ORTHO05D006292 3.6e-196 688.7 509 75.6
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 9.0e-195 684.1 501 70.9
Thecc.03G119100 Theobroma cacao HOM05D000464 ORTHO05D006292 4.5e-194 681.8 509 73.1
Hma1.2p1_0046F.1_g027400 Hydrangea macrophylla HOM05D000464 ORTHO05D006292 2.2e-193 679.5 509 72.5
PSO067G0023 Papaver somniferum HOM05D000464 ORTHO05D006292 3.8e-193 678.7 509 74.1
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 1.4e-192 676.8 510 68.2
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 3.2e-192 675.6 509 70.5
Manes.14G056900 Manihot esculenta HOM05D000464 ORTHO05D006292 2.3e-190 669.5 509 75.0
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 1.9e-189 666.4 505 71.3
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 5.6e-189 664.8 509 70.5
MD14G1166400 Malus domestica HOM05D000464 ORTHO05D006292 2.8e-188 662.5 507 71.8
Phvul.003G207100 Phaseolus vulgaris HOM05D000464 ORTHO05D006292 6.2e-188 661.4 512 68.4
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 2.4e-187 659.4 509 66.6
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 6.9e-187 657.9 518 71.4
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.2e-186 657.1 509 66.4
Cfa009511 Carpinus fangiana HOM05D000464 ORTHO05D000408 4.5e-186 655.2 509 72.3
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 2.2e-185 652.9 509 69.2
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 2.9e-185 652.5 505 68.7
TWI39G0801 Tripterygium wilfordii HOM05D000464 ORTHO05D006292 2.9e-185 652.5 509 72.9
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.9e-184 649.8 509 69.2
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 1.2e-183 647.1 506 66.0
Glyma.17G126200 Glycine max HOM05D000464 ORTHO05D006292 1.2e-183 647.1 510 67.5
QL10p005870 Quercus lobata HOM05D000464 ORTHO05D006292 2.1e-183 646.4 512 73.0
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 1.3e-182 643.7 507 68.0
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 6.7e-182 641.3 507 66.1
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 6.7e-182 641.3 509 65.8
CANSAT80G2689 Cannabis sativa HOM05D000464 ORTHO05D006292 8.7e-182 641.0 509 71.5
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 1.5e-181 640.2 510 69.6
CAN.G472.58 Capsicum annuum HOM05D000464 ORTHO05D006292 4.3e-181 638.6 507 64.7
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 7.4e-181 637.9 515 63.7
FAN08G0579 Fragaria x ananassa HOM05D000464 ORTHO05D006292 1.6e-180 636.7 509 70.9
FvH4_5g06790 Fragaria vesca HOM05D000464 ORTHO05D006292 3.7e-180 635.6 509 70.9
Duzib205G1058 Durio zibethinus HOM05D000464 ORTHO05D006292 6.2e-180 634.8 509 69.4
FAN13G2293 Fragaria x ananassa HOM05D000464 ORTHO05D006292 6.2e-180 634.8 509 70.9
FAN18G1884 Fragaria x ananassa HOM05D000464 ORTHO05D000408 6.2e-180 634.8 509 70.7
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 1.8e-179 633.3 528 65.5
FAN04G0526 Fragaria x ananassa HOM05D000464 ORTHO05D006292 1.8e-179 633.3 510 70.0
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 1.8e-179 633.3 503 64.0
Manes.06G112800 Manihot esculenta HOM05D000464 ORTHO05D006292 2.4e-179 632.9 509 67.6
THA.LOC104824993 Tarenaya hassleriana HOM05D000464 ORTHO05D006292 3.1e-179 632.5 507 69.8
Actinidia36765 Actinidia chinensis HOM05D000464 ORTHO05D006292 5.3e-179 631.7 509 69.0
Lsat_1_v5_gn_1_28641 Lactuca sativa HOM05D000464 ORTHO05D006292 5.3e-179 631.7 504 65.7
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 1.2e-178 630.6 504 63.5
Sc04g0001170 Simmondsia chinensis HOM05D000464 ORTHO05D006292 1.2e-178 630.6 509 70.5
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.5e-178 630.2 507 61.7
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 1.5e-178 630.2 512 67.0
DCAR_007461 Daucus carota HOM05D000464 ORTHO05D006292 2.0e-178 629.8 517 66.7
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 2.6e-178 629.4 509 64.8
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 2.6e-178 629.4 503 62.4
C09p38870 Brassica napus HOM05D000464 ORTHO05D006292 3.4e-178 629.0 509 67.8
Nitab4.5_0000510g0020 Nicotiana tabacum HOM05D000464 ORTHO05D006292 4.5e-178 628.6 508 68.3
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 4.5e-178 628.6 512 63.3
Lj1g0006305 Lotus japonicus HOM05D000464 ORTHO05D006292 1.3e-177 627.1 510 65.5
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 1.7e-177 626.7 505 67.1
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.7e-177 626.7 509 62.3
BcaB08g35394 Brassica carinata HOM05D000464 ORTHO05D006292 2.2e-177 626.3 509 67.0
BcaC04g20812 Brassica carinata HOM05D000464 ORTHO05D006292 2.2e-177 626.3 503 68.4
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 2.2e-177 626.3 510 62.2
Ca_19433_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 2.9e-177 625.9 510 64.7
Eucgr.B00173 Eucalyptus grandis HOM05D000464 ORTHO05D006292 2.9e-177 625.9 509 69.9
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 2.9e-177 625.9 503 61.8
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 6.5e-177 624.8 503 61.6
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 6.5e-177 624.8 509 65.6
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 6.5e-177 624.8 507 67.1
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 1.4e-176 623.6 507 66.1
Ciclev10019772m.g Citrus clementina HOM05D000464 ORTHO05D006292 9.3e-176 620.9 510 72.9
Lj5A133T97 Lonicera japonica HOM05D000464 ORTHO05D006292 1.2e-175 620.5 513 63.7
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 2.1e-175 619.8 509 65.2
Glyma.05G043700 Glycine max HOM05D000464 ORTHO05D006292 2.1e-175 619.8 510 65.1
Sed0016445 Sechium edule HOM05D000464 ORTHO05D006292 7.9e-175 617.8 502 68.1
Aqoxy5G03645 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 1.3e-174 617.1 509 71.9
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 1.8e-174 616.7 513 63.2
MSTRG.4338 Avicennia marina HOM05D000464 ORTHO05D006292 9.7e-173 610.9 509 67.4
Lsat_1_v5_gn_4_78400 Lactuca sativa HOM05D000464 ORTHO05D006292 9.7e-173 610.9 507 65.7
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 1.8e-171 606.7 510 67.1
PGSC0003DMG402015159 Solanum tuberosum HOM05D000464 ORTHO05D006292 9.0e-171 604.4 507 60.7
Gohir.A09G244600 Gossypium hirsutum HOM05D000464 ORTHO05D006292 1.2e-170 604.0 509 65.8
Gorai.006G269900 Gossypium raimondii HOM05D000464 ORTHO05D006292 7.7e-170 601.3 509 67.8
Atru.chr9.967 Acer truncatum HOM05D000464 ORTHO05D000408 1.0e-169 600.9 508 64.8
Gohir.D09G245500 Gossypium hirsutum HOM05D000464 ORTHO05D006292 1.3e-169 600.5 509 67.8
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 6.5e-169 598.2 471 68.2
Lalb_Chr12g0202001 Lupinus albus HOM05D000464 ORTHO05D006292 9.4e-168 594.3 512 61.5
RcHm_v2.0_Chr7g0191771 Rosa chinensis HOM05D000464 ORTHO05D006292 9.4e-168 594.3 468 72.4
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 1.2e-167 594.0 509 65.0
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 2.1e-167 593.2 508 62.0
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 4.6e-167 592.0 501 61.9
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 6.1e-167 591.7 507 62.7
Ca_16109_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 7.9e-167 591.3 510 61.6
MD06G1161200 Malus domestica HOM05D000464 ORTHO05D006292 1.0e-166 590.9 475 69.5
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 3.9e-166 589.0 512 64.3
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 6.7e-166 588.2 510 64.3
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 5.7e-165 585.1 512 62.9
Peaxi162Scf00089g01023 Petunia axillaris HOM05D000464 ORTHO05D006292 9.7e-165 584.3 467 67.7
Lalb_Chr07g0183151 Lupinus albus HOM05D000464 ORTHO05D006292 1.7e-164 583.6 510 63.1
HPP92_027101 Vanilla planifolia HOM05D000464 ORTHO05D006292 1.7e-164 583.6 509 58.0
Lj9A440T62 Lonicera japonica HOM05D000464 ORTHO05D006292 5.9e-162 575.1 468 70.5
Prupe.5G160700 Prunus persica HOM05D000464 ORTHO05D006292 2.5e-160 569.7 509 67.0
GSVIVG01007587001 Vitis vinifera HOM05D000464 ORTHO05D006292 3.6e-159 565.8 523 65.4
Rhsim08G0181600 Rhododendron simsii HOM05D000464 ORTHO05D006292 3.0e-158 562.8 512 63.1
SalBow6G1450 Salvia bowleyana HOM05D000464 ORTHO05D006292 3.9e-158 562.4 503 64.0
SalBow6G2987 Salvia bowleyana HOM05D000464 ORTHO05D006292 3.9e-158 562.4 503 64.0
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 1.7e-153 547.0 442 66.1
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 8.5e-153 544.7 512 56.6
Ah.15g095450 Amaranthus hybridus HOM05D000464 ORTHO05D006292 1.1e-152 544.3 493 62.5
Nn3g16633 Nelumbo nucifera HOM05D000464 ORTHO05D006292 1.5e-152 543.9 374 82.1
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 4.2e-152 542.3 475 60.6
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 2.1e-151 540.0 510 56.7
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 4.7e-151 538.9 509 56.2
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 1.5e-149 533.9 505 60.0
Nitab4.5_0001812g0090 Nicotiana tabacum HOM05D000464 ORTHO05D006292 5.4e-139 498.8 442 59.7
Haze_07635 Corylus avellana HOM05D000464 ORTHO05D006292 4.5e-138 495.7 397 69.0
HPP92_021440 Vanilla planifolia HOM05D000464 ORTHO05D006292 3.1e-131 473.0 524 48.7
Sopen03g030860 Solanum pennellii HOM05D000464 ORTHO05D006292 9.1e-131 471.5 386 64.5
Solyc03g111740.3 Solanum lycopersicum HOM05D000464 ORTHO05D006292 7.7e-130 468.4 386 64.5
Os03g0746600 Oryza sativa ssp. japonica HOM05D000464 ORTHO05D006292 1.1e-123 448.0 506 51.6
SEGI_39654 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 3.2e-123 446.4 460 57.8
Zm00001eb057050 Zea mays HOM05D000464 ORTHO05D006292 3.1e-118 429.9 504 52.0
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 1.9e-107 394.0 508 42.7
SMO203G0251 Selaginella moellendorffii HOM05D000464 ORTHO05D006292 1.5e-104 384.4 510 43.5
Mapoly0102s0055 Marchantia polymorpha HOM05D000464 ORTHO05D006292 6.2e-103 379.0 500 43.0
Medtr4g007500 Medicago truncatula HOM05D000464 ORTHO05D006292 5.8e-101 372.5 397 55.4
Pp3c2_6010 Physcomitrium patens HOM05D000464 ORTHO05D006292 1.7e-100 370.9 500 40.8
Oeu045491.1 Olea europaea HOM05D000464 ORTHO05D000397 4.7e-95 352.8 312 60.9
CBR_g12113 Chara braunii HOM05D000464 ORTHO05D006292 9.3e-91 338.6 462 44.8
Gorai.008G203700 Gossypium raimondii HOM05D000464 ORTHO05D006292 8.7e-89 332.0 509 41.3
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 4.9e-76 289.7 303 49.8
unitig_21.g20437 Utricularia gibba HOM05D000464 ORTHO05D006292 4.6e-74 283.1 202 64.9
Pp3c1_39330 Physcomitrium patens HOM05D000464 ORTHO05D006292 5.1e-73 279.6 499 35.9
Sopen03g030870 Solanum pennellii HOM05D000234 ORTHO05D001258 2.6e-69 267.3 268 54.1
unitig_21.g20438 Utricularia gibba HOM05D000464 ORTHO05D006292 3.0e-57 227.3 366 41.0
Gohir.A12G186901 Gossypium hirsutum HOM05D000464 ORTHO05D006292 3.4e-53 213.8 256 47.7
CBR_g37122 Chara braunii HOM05D000464 ORTHO05D006292 5.1e-49 199.9 464 31.7
Actinidia19369 Actinidia chinensis HOM05D000464 ORTHO05D006292 1.0e-44 185.7 155 60.6
Peaxi162Scf00763g00043 Petunia axillaris HOM05D001333 ORTHO05D001208 2.5e-43 181.0 256 37.1
AagrBONN_evm.TU.Sc2ySwM_228.4579 Anthoceros agrestis HOM05D000464 ORTHO05D006292 3.0e-41 174.1 515 28.7
MCO16G619 Micromonas commoda HOM05D000464 ORTHO05D006292 8.8e-41 172.6 533 26.1
Lsat_1_v5_gn_6_51760 Lactuca sativa HOM05D000464 ORTHO05D006292 4.8e-39 166.8 161 62.1
HPP92_021406 Vanilla planifolia HOM05D001244 ORTHO05D001076 8.2e-39 166.0 133 68.4
Sc23g0006430 Simmondsia chinensis HOM05D000464 ORTHO05D006292 4.5e-37 160.2 299 33.4
Dinv38497 Davidia involucrata HOM05D000068 ORTHO05D000084 1.5e-32 145.2 101 75.2
RcHm_v2.0_Chr3g0455571 Rosa chinensis HOM05D000464 ORTHO05D006292 5.0e-28 130.2 103 63.1
Actinidia08841 Actinidia chinensis HOM05D000464 ORTHO05D006292 2.6e-24 117.9 108 62.0
PRCOL_00006710 Prasinoderma coloniale HOM05D000464 ORTHO05D006292 4.8e-23 113.6 380 26.8
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 1.5e-19 102.1 151 44.4
TAR622G0239 Trochodendron aralioides HOM05D000464 ORTHO05D006292 5.5e-19 100.1 93 52.7
Glyma.08G291750 Glycine max HOM05D000464 ORTHO05D006292 2.3e-17 94.7 85 62.4
AagrBONN_evm.TU.Sc2ySwM_344.119 Anthoceros agrestis HOM05D000464 ORTHO05D006292 7.0e-14 83.2 87 43.7
Sabra12G0065600 Salix brachista HOM05D000464 ORTHO05D000408 7.0e-14 83.2 130 37.7
Medtr6g027280 Medicago truncatula HOM05D000464 ORTHO05D019055 5.0e-12 77.0 181 37.0
RcHm_v2.0_Chr2g0119791 Rosa chinensis HOM05D006430 ORTHO05D007585 5.6e-11 73.6 301 23.3
FAN05G3385 Fragaria x ananassa HOM05D006430 ORTHO05D007585 1.6e-10 72.0 307 22.8
AagrBONN_evm.TU.Sc2ySwM_368.2619 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-09 68.6 97 38.1
COL.COLO4_24753 Corchorus olitorius HOM05D000464 ORTHO05D006292 8.9e-09 66.2 82 46.3
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.5e-08 65.5 285 22.5
Carub.0005s0608 Capsella rubella HOM05D004386 ORTHO05D005247 1.7e-07 62.0 119 32.8
Actinidia16210 Actinidia chinensis HOM05D000464 ORTHO05D006292 2.9e-07 61.2 40 77.5
TPR.G15737 Trifolium pratense HOM05D000453 ORTHO05D000387 4.9e-07 60.5 186 26.9
unitig_52.g17616 Utricularia gibba HOM05D000453 ORTHO05D000387 4.9e-07 60.5 218 26.1
Haze_07636 Corylus avellana HOM05D000007 ORTHO05D000017 1.1e-06 59.3 91 36.3
Solyc03g111750.3 Solanum lycopersicum HOM05D000464 ORTHO05D006292 1.4e-06 58.9 36 66.7
Zm00001eb181820 Zea mays HOM05D006430 ORTHO05D007585 1.4e-06 58.9 117 29.1
Lj4g0013268 Lotus japonicus HOM05D006430 ORTHO05D007585 2.4e-06 58.2 113 30.1
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 2.4e-06 58.2 177 25.4
AL5G17060 Arabidopsis lyrata HOM05D004386 ORTHO05D005247 3.2e-06 57.8 119 31.9
Lalb_Chr12g0203371 Lupinus albus HOM05D006430 ORTHO05D007585 3.2e-06 57.8 113 28.3
AT3G27640 Arabidopsis thaliana HOM05D004386 ORTHO05D005247 4.1e-06 57.4 119 31.9
A09p03460 Brassica napus HOM05D004386 ORTHO05D005247 4.1e-06 57.4 119 30.3
BraA09t35984Z Brassica rapa HOM05D004386 ORTHO05D005247 4.1e-06 57.4 119 30.3
TWI12G1386 Tripterygium wilfordii HOM05D004386 ORTHO05D005247 4.1e-06 57.4 300 20.3
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 5.4e-06 57.0 195 23.6
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 5.4e-06 57.0 189 23.3
CARHR149060 Cardamine hirsuta HOM05D004386 ORTHO05D005247 5.4e-06 57.0 119 31.9
FAN26G1413 Fragaria x ananassa HOM05D006430 ORTHO05D007585 7.0e-06 56.6 113 27.4
RcHm_v2.0_Chr2g0119831 Rosa chinensis HOM05D006430 ORTHO05D007585 7.0e-06 56.6 113 27.4
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 7.0e-06 56.6 193 24.4


User provided reference genes

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