Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.1e-297 1025.8 503 100.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.1e-287 991.1 496 98.4
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 2.0e-286 988.4 494 98.0
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 4.1e-279 964.1 496 94.6
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 6.9e-279 963.4 495 94.9
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 2.0e-278 961.8 495 94.3
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 2.6e-278 961.4 496 93.5
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 3.4e-278 961.1 496 94.2
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 3.4e-278 961.1 491 94.9
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 5.9e-278 960.3 497 94.0
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 7.6e-278 959.9 497 94.0
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 1.0e-277 959.5 496 94.2
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 1.0e-277 959.5 497 94.0
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 2.2e-277 958.4 497 94.0
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 2.2e-277 958.4 496 93.5
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 2.2e-277 958.4 496 93.8
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.2e-277 958.4 496 93.3
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 2.9e-277 958.0 493 94.3
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 5.0e-277 957.2 497 94.0
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 8.4e-277 956.4 496 93.5
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 8.4e-277 956.4 496 93.5
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 1.1e-276 956.1 496 94.0
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 2.5e-276 954.9 496 92.9
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 2.5e-276 954.9 495 93.9
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.5e-276 954.9 491 94.1
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 5.5e-276 953.7 493 94.1
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.6e-275 952.2 495 93.7
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 1.6e-275 952.2 491 94.1
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.1e-275 951.8 496 93.5
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-275 951.4 489 94.1
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 2.7e-275 951.4 493 93.7
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 3.6e-275 951.0 496 93.1
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 4.6e-275 950.7 491 93.3
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 7.9e-275 949.9 491 93.9
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 7.9e-275 949.9 495 93.5
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 1.0e-274 949.5 489 93.9
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.3e-274 949.1 495 93.1
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 1.3e-274 949.1 493 93.5
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.3e-274 949.1 491 93.5
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 1.8e-274 948.7 491 93.7
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.8e-274 948.7 493 93.3
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.0e-274 948.0 496 91.9
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 3.0e-274 948.0 491 93.1
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 3.0e-274 948.0 495 93.1
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 3.0e-274 948.0 496 92.7
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 3.0e-274 948.0 491 93.9
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.9e-274 947.6 491 93.9
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 3.9e-274 947.6 495 92.7
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 3.9e-274 947.6 495 92.7
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 5.1e-274 947.2 495 92.7
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.1e-274 947.2 496 92.9
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.1e-274 947.2 496 92.9
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.1e-274 947.2 496 92.9
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 5.1e-274 947.2 494 93.1
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.7e-274 946.8 496 92.9
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 1.5e-273 945.7 496 92.7
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 1.5e-273 945.7 497 92.6
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.9e-273 945.3 496 91.5
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 2.5e-273 944.9 491 92.5
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.5e-273 944.9 495 92.9
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 3.3e-273 944.5 491 93.1
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 3.3e-273 944.5 500 92.2
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 4.3e-273 944.1 491 92.7
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 7.4e-273 943.3 495 92.9
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 9.7e-273 943.0 499 92.0
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 9.7e-273 943.0 491 92.5
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.3e-272 942.6 490 93.5
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.6e-272 942.2 491 92.7
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.6e-272 942.2 491 92.5
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.6e-272 942.2 493 92.9
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.2e-272 941.8 529 88.1
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 3.7e-272 941.0 491 92.5
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 3.7e-272 941.0 491 92.3
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 3.7e-272 941.0 491 92.3
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 4.8e-272 940.6 512 90.0
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 4.8e-272 940.6 496 91.3
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 2.4e-271 938.3 491 92.1
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 2.4e-271 938.3 491 92.1
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 4.1e-271 937.6 500 91.8
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.2e-270 936.0 487 93.4
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 1.5e-270 935.6 499 91.2
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 7.7e-270 933.3 533 87.1
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.3e-269 932.6 526 88.2
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 1.3e-269 932.6 495 90.5
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.2e-268 927.9 494 92.7
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 5.5e-268 927.2 496 91.1
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 4.6e-267 924.1 494 89.1
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 6.1e-267 923.7 551 83.7
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 7.7e-262 906.7 457 95.8
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.9e-261 904.8 491 88.6
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.2e-260 900.2 493 87.6
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.4e-260 899.8 493 87.6
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 6.1e-259 897.1 504 88.1
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.9e-253 878.2 475 88.2
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 4.7e-251 870.9 493 87.4
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.0e-249 865.5 457 91.5
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 4.0e-242 841.3 423 95.7
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.1e-235 818.9 420 95.5
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.4e-231 806.2 476 80.7
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.9e-229 798.5 390 97.7
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.0e-226 790.0 491 81.1
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 2.0e-217 759.2 387 95.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 3.7e-216 755.0 479 76.8
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-215 753.4 493 75.9
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.5e-204 716.5 496 74.4
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 8.4e-200 700.7 498 74.1
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.2e-198 696.8 463 77.1
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 7.8e-198 694.1 342 97.1
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.2e-190 670.2 494 72.3
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.2e-190 670.2 457 75.9
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.2e-190 670.2 457 75.9
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.8e-190 667.5 496 70.8
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.7e-184 649.8 495 68.9
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.4e-183 644.8 493 70.4
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 6.0e-182 641.3 494 67.2
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 4.2e-159 565.5 496 63.5
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.1e-151 540.8 265 96.6
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.5e-135 486.5 298 82.9
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 4.7e-134 482.3 248 91.1
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.9e-129 465.3 256 90.6
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 3.2e-127 459.5 293 78.8
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.3e-125 453.4 494 54.3
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 3.4e-124 449.5 385 62.9
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.7e-115 420.6 493 50.9
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-114 417.9 235 89.8
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.8e-109 400.6 198 95.5
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.1e-106 391.3 196 93.9
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-102 377.9 398 53.0
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.0e-98 362.1 433 47.6
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 3.9e-96 356.3 246 74.4
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.2e-91 340.5 167 97.0
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.9e-91 340.1 183 86.9
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-89 334.7 298 63.1
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.1e-87 328.2 493 43.6
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 4.3e-87 326.2 490 43.5
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.5e-84 317.8 154 96.1
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 2.9e-83 313.5 319 57.7
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.8e-78 297.0 147 95.9
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 3.6e-78 296.6 290 56.6
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.8e-69 267.7 174 79.9
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 9.9e-68 261.9 150 86.7
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.6e-65 253.1 152 82.9
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.3e-63 246.5 132 86.4
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.9e-59 233.8 203 60.1
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-51 208.0 123 84.6
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 6.5e-51 206.1 133 78.9
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 3.9e-48 196.8 105 90.5
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 3.7e-46 190.3 234 50.0
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.3e-46 189.5 138 69.6
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.4e-45 187.6 92 94.6
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 5.0e-43 179.9 113 79.6
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 4.7e-33 146.7 98 77.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 4.5e-28 130.2 141 57.4
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-27 129.0 75 85.3
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.1e-26 125.6 73 89.0
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 9.7e-23 112.5 80 77.5
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 4.8e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 3.8e-19 100.5 58 84.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 5.2e-16 90.1 63 69.8
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-15 88.6 47 89.4
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 9.7e-15 85.9 88 60.2
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.8e-14 84.3 59 69.5
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.1e-13 82.4 49 79.6
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 5.9e-12 76.6 40 85.0
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 6.5e-11 73.2 53 75.5
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 6.5e-11 73.2 53 75.5


User provided reference genes

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