Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 0.0e+00 1822.8 912 100.0
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 0.0e+00 1143.3 958 62.5
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.4e-301 1039.6 956 58.9
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 4.4e-300 1034.6 961 58.7
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.7e-299 1032.7 949 56.3
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 6.4e-291 1004.2 959 56.4
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 4.6e-289 998.0 953 56.6
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 1.4e-285 986.5 952 55.1
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 2.4e-285 985.7 952 55.0
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 9.9e-284 980.3 943 56.2
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.1e-282 976.9 962 54.9
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.9e-282 976.1 952 54.2
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 2.7e-281 972.2 960 55.4
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 2.5e-279 965.7 964 54.9
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 3.3e-279 965.3 956 54.9
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 3.6e-278 961.8 959 55.4
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.8e-272 943.0 946 54.7
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 5.1e-272 941.4 974 52.8
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.1e-271 940.3 953 53.0
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 2.5e-271 939.1 953 53.9
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 5.6e-271 937.9 946 54.1
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 4.9e-267 924.9 950 53.8
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 8.4e-267 924.1 966 54.9
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 3.5e-265 918.7 951 52.9
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 3.5e-265 918.7 942 53.5
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 9.6e-263 910.6 951 52.1
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.1e-262 909.4 959 51.6
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 8.2e-262 907.5 974 51.2
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.2e-262 907.5 991 51.2
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 1.4e-261 906.7 968 50.7
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 2.4e-261 906.0 951 51.9
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.1e-261 905.2 973 51.3
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 6.9e-261 904.4 946 51.1
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 1.2e-260 903.7 952 52.0
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 5.5e-258 894.8 953 52.4
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 3.9e-256 888.6 947 51.4
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.5e-255 886.7 947 50.4
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 8.2e-254 880.9 955 50.7
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 3.1e-253 879.0 927 52.6
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.9e-253 877.9 953 50.9
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 6.9e-253 877.9 922 51.8
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.5e-252 876.7 950 50.9
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 2.6e-252 875.9 946 50.7
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 3.4e-252 875.5 979 49.4
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 8.5e-251 870.9 952 50.4
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 2.5e-250 869.4 946 50.2
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 4.2e-250 868.6 955 50.3
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 5.5e-250 868.2 937 51.0
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 3.0e-248 862.4 954 50.6
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 3.9e-248 862.1 976 50.3
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 6.7e-248 861.3 951 50.7
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.5e-247 860.1 949 50.1
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 2.0e-247 859.8 954 50.0
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 7.4e-247 857.8 965 49.7
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.3e-246 857.1 955 49.9
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.1e-245 854.0 952 49.5
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 6.9e-245 851.3 957 48.7
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 2.6e-244 849.4 949 49.8
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.5e-244 848.6 1039 47.2
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.0e-243 847.4 956 50.0
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 2.9e-243 845.9 941 48.7
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 1.0e-240 837.4 944 50.1
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.1e-239 833.9 958 48.3
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 2.6e-236 822.8 941 48.4
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 4.5e-236 822.0 954 48.8
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 3.6e-233 812.4 993 47.4
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 9.7e-231 804.3 959 47.8
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 7.0e-229 798.1 882 50.9
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 7.0e-229 798.1 922 48.6
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 3.5e-228 795.8 966 47.2
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 1.6e-220 770.4 841 50.9
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 4.5e-220 768.8 944 47.5
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.3e-214 750.7 936 47.3
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 2.3e-211 740.0 959 45.8
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.9e-210 736.9 979 44.5
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 5.6e-210 735.3 960 44.7
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 6.1e-209 731.9 964 44.9
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.0e-208 731.1 816 50.6
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 3.2e-205 719.5 809 52.0
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 7.0e-205 718.4 957 44.1
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.0e-204 716.8 952 43.8
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.3e-203 714.1 966 45.2
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.7e-203 713.8 976 44.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 2.2e-198 696.8 884 46.4
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.7e-198 696.0 806 50.1
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.2e-192 675.6 645 57.4
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 1.3e-187 661.0 974 42.7
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 3.3e-186 656.4 959 41.8
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 3.3e-186 656.4 954 41.9
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 8.1e-185 651.7 720 50.3
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.8e-184 650.6 961 41.5
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 7.6e-183 645.2 959 41.8
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.9e-181 640.6 960 41.8
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 3.2e-181 639.8 967 41.9
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 3.9e-179 632.9 828 44.3
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 3.3e-178 629.8 877 43.6
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.6e-177 627.5 727 48.3
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 4.4e-175 619.4 659 51.1
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 2.9e-174 616.7 883 42.2
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.6e-172 609.4 629 53.7
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.6e-170 602.4 570 57.2
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 3.6e-169 599.7 840 44.0
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.3e-165 585.1 850 42.2
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 2.1e-164 583.9 1026 38.3
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.3e-162 576.6 870 42.1
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 3.8e-158 563.1 653 46.7
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.9e-158 562.8 656 46.6
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.9e-148 528.9 754 43.4
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-142 511.5 668 46.7
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 1.7e-142 511.1 668 46.7
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.8e-139 501.1 818 39.1
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.2e-134 484.2 739 40.9
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.8e-131 474.6 703 41.7
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 1.8e-128 464.5 702 41.5
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.1e-124 449.5 601 44.4
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 2.6e-122 444.1 1003 32.3
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 2.2e-121 441.0 986 31.9
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 5.3e-120 436.4 953 33.2
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 8.2e-113 412.5 359 59.9
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.3e-110 405.2 824 34.7
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.8e-110 403.7 524 45.2
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 5.5e-109 399.8 845 34.2
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 1.1e-104 385.6 484 48.6
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.6e-103 381.7 565 43.2
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 3.5e-103 380.6 555 41.4
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.3e-86 325.5 565 38.4
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.6e-77 293.5 258 59.7
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.0e-74 285.0 257 58.0
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 2.2e-73 281.6 341 46.0
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 4.1e-72 277.3 349 45.3
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.8e-67 261.9 262 52.7
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.1e-64 250.0 218 56.4
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 1.6e-60 238.8 549 36.1
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.1e-60 238.4 306 46.4
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 5.4e-56 223.8 1166 23.7
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 7.1e-56 223.4 147 73.5
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 4.3e-53 214.2 198 55.1
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-51 209.5 228 47.8
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.5e-50 205.7 296 42.9
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 9.9e-50 203.0 298 41.9
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 2.1e-47 195.3 187 51.9
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 4.2e-40 171.0 144 61.1
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 5.3e-35 154.1 448 31.7
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 8.7e-30 136.7 153 50.3
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 1.9e-29 135.6 234 39.3
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 3.4e-26 124.8 120 51.7
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 8.5e-25 120.2 109 55.0
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 7.2e-24 117.1 92 60.9
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 6.1e-23 114.0 84 64.3
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 4.8e-20 104.4 128 43.8
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-18 99.4 152 37.5
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 2.5e-16 92.0 151 35.8
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 2.5e-16 92.0 105 50.5
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 4.7e-15 87.8 70 64.3
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 6.7e-14 84.0 104 40.4
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 7.4e-13 80.5 67 56.7
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 4.8e-12 77.8 115 36.5
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.1e-11 76.6 115 35.7
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 1.4e-11 76.3 93 40.9
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 1.4e-11 76.3 93 40.9
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 2.4e-11 75.5 86 44.2
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 4.1e-11 74.7 93 39.8
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 2.0e-10 72.4 146 30.8
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 3.4e-10 71.6 51 68.6
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 5.0e-09 67.8 121 33.9
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 6.5e-09 67.4 81 43.2
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 4.2e-08 64.7 142 33.8
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 7.2e-08 63.9 88 39.8
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 7.2e-08 63.9 88 39.8
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 4.7e-07 61.2 67 46.3
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 5.2e-06 57.8 121 31.4
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 8.8e-06 57.0 103 35.0


User provided reference genes

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