Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.1e-111 405.6 192 100.0
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.3e-84 316.6 194 83.0
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 4.5e-77 291.6 194 77.3
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 1.2e-74 283.5 194 74.7
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 1.2e-74 283.5 194 75.3
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.0e-73 280.4 194 75.8
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 2.3e-73 279.3 194 73.7
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 2.3e-73 279.3 194 73.7
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.9e-73 278.5 194 72.7
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 6.7e-73 277.7 194 72.7
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.5e-72 276.6 194 72.2
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.9e-72 276.2 194 72.2
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.5e-72 275.8 194 72.2
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 2.5e-72 275.8 194 73.2
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 2.5e-72 275.8 194 73.2
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.5e-72 275.8 194 72.2
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 3.3e-72 275.4 194 73.7
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 5.6e-72 274.6 194 72.2
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 5.6e-72 274.6 194 73.2
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 7.4e-72 274.2 194 72.7
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 7.4e-72 274.2 196 73.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 9.6e-72 273.9 194 71.6
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.3e-71 273.5 194 72.7
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 2.1e-71 272.7 194 72.2
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 2.8e-71 272.3 194 72.2
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 2.8e-71 272.3 194 70.6
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 2.8e-71 272.3 194 71.6
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.8e-71 272.3 194 72.7
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 2.8e-71 272.3 194 71.6
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 4.8e-71 271.6 194 69.1
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 6.2e-71 271.2 194 70.6
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 6.2e-71 271.2 194 71.6
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 6.2e-71 271.2 194 71.6
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 8.2e-71 270.8 194 71.1
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.1e-70 270.4 194 72.2
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 1.1e-70 270.4 194 71.6
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.4e-70 270.0 194 70.6
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.4e-70 270.0 194 71.1
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.4e-70 270.0 194 71.1
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.8e-70 269.6 194 72.7
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.4e-70 269.2 194 70.6
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 3.1e-70 268.9 194 70.6
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 5.3e-70 268.1 194 70.6
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 5.3e-70 268.1 194 72.7
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 5.3e-70 268.1 194 72.7
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 5.3e-70 268.1 194 72.7
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 9.0e-70 267.3 194 71.6
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.2e-69 266.9 194 71.1
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.5e-69 266.5 194 71.1
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 2.6e-69 265.8 194 70.6
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 3.4e-69 265.4 194 70.6
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 4.5e-69 265.0 194 68.6
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 7.6e-69 264.2 194 69.6
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.0e-68 263.8 194 71.1
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.0e-68 263.8 194 71.6
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.0e-68 263.8 194 70.6
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 1.3e-68 263.5 194 68.6
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.3e-68 263.5 194 68.6
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.7e-68 263.1 196 69.4
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.7e-68 263.1 194 68.6
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.8e-68 261.9 194 68.6
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 6.5e-68 261.2 194 69.6
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 8.4e-68 260.8 194 70.6
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.9e-67 259.6 208 65.9
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 2.1e-66 256.1 215 64.7
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 3.5e-66 255.4 197 71.1
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 7.9e-66 254.2 196 66.8
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 7.9e-66 254.2 194 68.0
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 7.9e-66 254.2 194 68.0
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.3e-65 253.4 195 70.8
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 3.9e-65 251.9 197 69.5
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 3.9e-65 251.9 199 68.3
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 6.7e-65 251.1 194 67.0
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.1e-64 250.4 205 63.9
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.1e-64 250.4 194 67.0
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.3e-64 248.8 196 69.4
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.3e-64 248.8 196 68.9
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 5.7e-64 248.1 183 68.9
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 5.7e-64 248.1 194 68.0
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.3e-63 246.9 200 66.5
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.3e-63 246.9 195 65.1
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.6e-63 246.5 195 68.7
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 2.2e-63 246.1 194 67.0
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.7e-63 245.4 195 68.7
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.3e-63 244.6 195 68.2
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-62 243.8 195 68.2
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-62 243.8 195 68.2
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.4e-62 243.4 194 65.5
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 2.6e-61 239.2 195 66.2
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 5.9e-61 238.0 209 64.1
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 5.9e-61 238.0 197 64.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.3e-60 236.9 206 65.0
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.3e-60 236.9 195 64.6
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.9e-59 233.0 197 63.5
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.4e-59 230.7 222 60.4
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 3.6e-58 228.8 196 63.8
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 7.9e-58 227.6 194 61.9
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 1.4e-57 226.9 195 62.1
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 1.8e-57 226.5 196 62.2
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 3.9e-57 225.3 194 61.9
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 5.1e-57 224.9 196 62.2
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 6.7e-57 224.6 196 62.2
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 6.7e-57 224.6 196 62.2
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 6.7e-57 224.6 196 62.2
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 5.7e-56 221.5 194 60.3
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 9.7e-56 220.7 194 60.8
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-55 220.3 195 60.0
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.7e-55 219.9 208 56.7
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.8e-55 219.2 203 60.6
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.3e-52 210.3 196 61.2
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 9.4e-51 204.1 141 73.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 6.7e-49 198.0 206 56.8
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.7e-47 193.4 194 55.2
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 1.4e-46 190.3 205 54.6
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.9e-44 182.6 132 71.2
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 3.2e-43 179.1 117 77.8
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 8.2e-39 164.5 111 75.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.1e-35 154.1 103 79.6
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.1e-35 154.1 204 48.5
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 8.8e-33 144.4 193 45.6
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 6.5e-28 128.3 193 43.0
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 6.5e-28 128.3 193 43.0
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 6.5e-28 128.3 193 43.0
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 3.2e-27 125.9 183 46.4
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 9.4e-27 124.4 98 64.3
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 1.1e-19 100.9 69 75.4
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-14 82.8 72 61.1
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 5.0e-12 75.5 48 75.0
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-09 66.6 136 36.0
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 7.0e-06 55.1 42 61.9


User provided reference genes

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