Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 0.0e+00 1644.8 816 100.0
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1255.0 814 76.5
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1139.8 812 70.3
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1132.5 817 68.5
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1108.2 815 67.2
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1100.9 815 67.0
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1094.3 815 66.7
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1094.3 811 67.0
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1093.6 811 66.6
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1090.9 811 66.0
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1086.6 811 67.2
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1086.2 813 66.2
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1085.1 811 66.5
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1084.3 810 65.6
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1083.6 811 66.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1082.8 809 66.3
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 0.0e+00 1078.9 784 68.9
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1078.2 812 65.3
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1076.6 810 66.5
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 9.4e-310 1066.6 810 66.2
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.5e-307 1059.3 809 65.9
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.7e-307 1057.4 809 66.0
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 9.7e-307 1056.6 816 63.5
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 3.1e-305 1051.6 831 62.8
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 3.5e-304 1048.1 811 64.4
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 7.2e-302 1040.4 810 62.7
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 9.4e-302 1040.0 815 64.4
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 9.4e-302 1040.0 816 65.3
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.7e-301 1038.5 809 65.1
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 1.8e-297 1025.8 818 64.8
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 4.1e-297 1024.6 795 63.5
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 2.2e-295 1018.8 820 64.3
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 5.0e-295 1017.7 788 63.3
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.5e-294 1016.1 812 63.8
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 2.1e-293 1012.3 811 62.9
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.0e-292 1010.0 810 64.0
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 2.3e-292 1008.8 820 61.3
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 5.2e-292 1007.7 818 61.6
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 5.7e-291 1004.2 786 63.2
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 2.2e-290 1002.3 815 62.7
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 4.9e-290 1001.1 826 60.9
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 6.3e-290 1000.7 808 62.4
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.4e-289 998.8 728 68.7
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 2.4e-289 998.8 820 61.2
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 7.0e-289 997.3 831 61.1
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.5e-286 989.6 831 60.5
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.5e-286 989.6 816 59.9
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 7.3e-286 987.3 822 60.3
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.6e-285 986.1 831 59.6
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 1.4e-284 983.0 874 59.3
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 6.8e-284 980.7 789 63.8
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.2e-283 979.9 815 61.3
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 7.5e-283 977.2 818 60.3
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 1.4e-281 973.0 754 64.9
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.4e-281 973.0 795 62.9
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 7.0e-281 970.7 824 60.3
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.2e-280 969.9 780 61.7
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.0e-279 966.8 818 60.3
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 5.0e-279 964.5 825 59.6
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 5.0e-279 964.5 793 61.8
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 1.5e-278 963.0 806 61.5
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.9e-278 962.6 817 59.6
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 2.5e-278 962.2 806 61.2
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 3.3e-278 961.8 795 62.4
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 6.2e-277 957.6 789 62.9
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 3.4e-275 951.8 806 60.5
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 4.9e-274 948.0 788 61.4
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.9e-274 948.0 814 62.0
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 9.2e-273 943.7 812 59.4
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.6e-272 943.0 790 61.8
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.3e-271 939.9 812 59.5
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.1e-270 936.8 812 59.1
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 4.3e-270 934.9 814 59.3
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 3.6e-269 931.8 812 58.5
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.8e-268 929.5 814 59.2
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 5.2e-268 927.9 813 58.2
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 2.0e-267 926.0 840 57.9
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 4.4e-267 924.9 820 60.0
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 3.2e-265 918.7 812 57.6
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 3.6e-261 905.2 819 57.1
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 8.6e-255 884.0 811 57.0
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 2.1e-253 879.4 918 51.3
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.2e-252 874.8 777 57.8
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 5.4e-249 864.8 825 55.5
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.7e-247 859.8 857 55.2
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 2.5e-246 855.9 811 55.9
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-236 823.9 617 67.9
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-236 823.9 617 67.9
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 4.9e-234 815.1 614 66.6
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.9e-231 805.4 591 67.5
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.2e-229 798.1 620 66.1
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 1.9e-222 776.5 761 55.1
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.6e-221 773.5 717 54.7
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 3.9e-215 752.3 616 62.5
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 4.2e-209 732.3 622 61.7
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 3.3e-206 722.6 768 50.7
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 2.6e-198 696.4 728 51.1
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 7.0e-196 688.3 818 47.2
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.2e-194 683.3 810 45.3
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.5e-169 600.9 545 59.1
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.2e-168 597.8 404 71.8
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 7.3e-161 572.0 472 59.7
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 6.2e-160 568.9 552 53.3
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.8e-158 561.6 484 60.3
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.5e-145 521.2 398 67.3
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.5e-137 494.6 784 38.3
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.1e-132 478.4 341 67.4
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.5e-131 473.4 338 66.6
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 4.6e-131 473.0 334 67.4
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 4.0e-127 459.9 772 38.3
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.0e-127 458.8 396 60.4
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 4.6e-123 446.4 777 37.5
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.5e-102 378.3 456 44.7
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 1.5e-97 361.7 482 46.1
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 1.1e-92 345.5 280 63.2
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.0e-82 310.8 296 55.1
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.1e-76 292.4 229 61.6
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 3.2e-76 290.8 864 29.1
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.2e-74 283.5 305 50.5
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 9.7e-73 279.3 323 48.3
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.3e-72 278.9 183 67.8
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.7e-70 271.2 381 45.7
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.0e-62 245.0 192 60.4
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.8e-61 240.7 222 53.6
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 2.3e-53 214.9 177 62.7
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.9e-52 211.8 144 66.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.6e-49 201.4 158 64.6
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.5e-44 184.9 170 56.5
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-43 182.6 170 56.5
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 3.4e-41 174.5 229 47.6
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.4e-39 168.3 214 43.5
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.2e-39 166.4 126 62.7
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.3e-37 162.5 243 41.2
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.2e-27 129.4 151 49.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 3.0e-21 108.2 864 22.6
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-17 94.4 108 40.7
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 4.3e-12 77.8 403 22.3
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 4.8e-11 74.3 73 56.2
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.0e-09 68.9 43 69.8
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 2.9e-08 65.1 72 52.8


User provided reference genes

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