Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.4e-68 262.7 124 100.0
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.6e-35 152.9 98 73.5
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 8.2e-32 140.6 96 67.7
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.5e-30 135.2 96 66.7
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 1.2e-22 110.2 83 61.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 7.7e-22 107.5 98 56.1
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 2.2e-21 105.9 98 51.0
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 2.2e-21 105.9 98 56.1
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.9e-21 105.5 102 53.9
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 3.8e-21 105.1 98 55.1
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 3.8e-21 105.1 101 52.5
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 6.5e-21 104.4 100 57.0
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 1.5e-20 103.2 101 52.5
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.9e-20 102.8 101 51.5
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 3.2e-20 102.1 101 51.5
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 3.2e-20 102.1 100 53.0
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 5.5e-20 101.3 88 55.7
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 7.2e-20 100.9 99 49.5
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 7.2e-20 100.9 77 63.6
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.2e-19 100.1 98 53.1
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 2.1e-19 99.4 88 55.7
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 2.7e-19 99.0 100 51.0
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.7e-19 99.0 86 57.0
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.6e-19 98.6 86 55.8
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 3.6e-19 98.6 100 52.0
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 4.7e-19 98.2 102 50.0
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 4.7e-19 98.2 86 57.0
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 4.7e-19 98.2 96 49.0
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 8.0e-19 97.4 98 51.0
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 8.0e-19 97.4 98 51.0
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 8.0e-19 97.4 98 51.0
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 1.4e-18 96.7 98 49.0
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.8e-18 96.3 99 52.5
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 3.0e-18 95.5 85 54.1
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 3.0e-18 95.5 85 54.1
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 3.0e-18 95.5 100 51.0
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 4.0e-18 95.1 107 47.7
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 8.8e-18 94.0 98 48.0
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.2e-17 93.6 98 46.9
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.5e-17 93.2 98 51.0
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.5e-17 93.2 104 52.9
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.5e-17 93.2 96 50.0
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 2.0e-17 92.8 77 58.4
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.4e-17 92.0 98 49.0
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.4e-17 92.0 98 49.0
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.4e-17 92.0 100 48.0
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.4e-17 92.0 100 48.0
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 4.4e-17 91.7 77 58.4
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 4.4e-17 91.7 77 59.7
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 4.4e-17 91.7 77 59.7
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 7.5e-17 90.9 98 43.9
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 9.8e-17 90.5 98 44.9
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 9.8e-17 90.5 98 44.9
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 9.8e-17 90.5 98 45.9
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.7e-16 89.7 98 42.9
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.7e-16 89.7 86 52.3
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 2.2e-16 89.4 99 48.5
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 2.8e-16 89.0 88 50.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 2.8e-16 89.0 76 57.9
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 3.7e-16 88.6 97 49.5
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 3.7e-16 88.6 99 49.5
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 6.3e-16 87.8 98 43.9
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 6.3e-16 87.8 102 50.0
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 8.3e-16 87.4 99 51.5
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.4e-15 86.7 98 44.9
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.4e-15 86.7 70 60.0
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 1.4e-15 86.7 111 45.9
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 3.1e-15 85.5 96 52.1
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 4.1e-15 85.1 100 43.0
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 5.4e-15 84.7 98 48.0
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 7.0e-15 84.3 103 45.6
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 9.1e-15 84.0 99 49.5
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 9.1e-15 84.0 98 43.9
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 9.1e-15 84.0 96 43.8
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 1.2e-14 83.6 98 42.9
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 1.6e-14 83.2 98 41.8
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 2.7e-14 82.4 110 41.8
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 1.0e-13 80.5 107 44.9
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 1.3e-13 80.1 72 54.2
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 1.7e-13 79.7 94 44.7
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 5.0e-13 78.2 93 40.9
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 5.0e-13 78.2 93 40.9
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 6.5e-13 77.8 97 41.2
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 6.5e-13 77.8 97 41.2
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 8.5e-13 77.4 87 43.7
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 8.5e-13 77.4 84 53.6
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 1.1e-12 77.0 99 40.4
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.5e-12 76.6 95 46.3
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.5e-12 75.9 87 51.7
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 4.2e-12 75.1 96 40.6
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 7.2e-12 74.3 109 46.8
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 7.2e-12 74.3 76 53.9
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 1.2e-11 73.6 99 39.4
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 1.2e-11 73.6 95 45.3
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.2e-11 73.6 95 45.3
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.6e-11 73.2 96 39.6
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 2.7e-11 72.4 96 40.6
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 2.7e-11 72.4 96 40.6
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 3.6e-11 72.0 96 46.9
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 4.7e-11 71.6 71 47.9
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 8.0e-11 70.9 77 49.4
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.0e-10 70.5 90 41.1
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 5.2e-10 68.2 70 51.4
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 5.2e-10 68.2 99 41.4
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 6.8e-10 67.8 74 50.0
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 6.8e-10 67.8 74 50.0
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 1.5e-09 66.6 102 41.2
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.5e-09 66.6 101 39.6
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 2.0e-09 66.2 97 43.3
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 3.4e-09 65.5 97 38.1
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 7.5e-09 64.3 110 35.5
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.8e-08 62.4 78 46.2
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 7.0e-07 57.8 48 58.3
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 7.0e-07 57.8 98 34.7
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.7e-06 55.8 112 33.0
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 7.7e-06 54.3 98 33.7


User provided reference genes

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