Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.4e-60 235.3 121 100.0
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.5e-41 171.0 117 76.1
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.7e-37 158.3 117 68.4
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 7.8e-35 150.6 117 68.4
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 5.6e-33 144.4 117 65.8
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 7.3e-33 144.1 117 66.7
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 7.3e-33 144.1 116 65.5
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.6e-32 142.9 117 65.0
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.1e-32 142.5 118 64.4
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.1e-32 142.5 118 64.4
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 2.8e-32 142.1 119 66.4
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 2.8e-32 142.1 104 68.3
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.8e-32 142.1 116 64.7
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.6e-32 141.7 117 65.0
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 4.7e-32 141.4 117 64.1
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 6.1e-32 141.0 116 63.8
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.4e-31 139.8 119 64.7
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.4e-31 139.8 117 65.0
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.8e-31 139.4 116 65.5
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.8e-31 139.4 116 64.7
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.8e-31 139.4 116 62.9
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.0e-31 138.7 120 66.7
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 3.0e-31 138.7 119 64.7
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 3.0e-31 138.7 105 69.5
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.0e-31 138.3 116 63.8
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 6.8e-31 137.5 106 69.8
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 6.8e-31 137.5 116 62.9
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 6.8e-31 137.5 116 63.8
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 8.9e-31 137.1 116 65.5
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.9e-31 137.1 117 63.2
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.2e-30 136.7 116 63.8
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.2e-30 136.7 120 66.7
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.5e-30 136.3 104 65.4
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.5e-30 136.3 117 61.5
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 2.0e-30 136.0 106 68.9
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 3.4e-30 135.2 106 64.2
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 4.4e-30 134.8 106 67.0
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 4.4e-30 134.8 117 62.4
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.7e-30 134.4 117 61.5
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 5.7e-30 134.4 116 62.1
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 7.5e-30 134.0 102 65.7
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 9.8e-30 133.7 106 67.9
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 9.8e-30 133.7 116 62.1
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 9.8e-30 133.7 105 65.7
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-29 133.3 119 63.0
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-29 133.3 119 63.0
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.7e-29 132.9 105 65.7
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.2e-29 132.5 116 62.1
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.9e-29 132.1 117 60.7
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.9e-29 132.1 117 60.7
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.9e-29 132.1 117 60.7
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 2.9e-29 132.1 117 62.4
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 4.9e-29 131.3 116 60.3
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 8.3e-29 130.6 119 62.2
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 8.3e-29 130.6 119 62.2
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 8.3e-29 130.6 122 63.1
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 8.3e-29 130.6 107 65.4
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.4e-28 129.0 118 58.5
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 2.4e-28 129.0 115 63.5
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.4e-28 129.0 116 59.5
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 2.4e-28 129.0 122 57.4
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 2.4e-28 129.0 117 63.2
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.2e-28 128.6 119 63.9
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 4.1e-28 128.3 118 58.5
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 4.1e-28 128.3 118 60.2
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 7.0e-28 127.5 118 61.9
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 9.2e-28 127.1 124 62.1
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.2e-27 126.7 118 59.3
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.6e-27 126.3 118 57.6
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.6e-27 126.3 109 67.9
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.0e-27 125.9 114 57.9
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.0e-27 125.9 118 60.2
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.6e-27 124.8 106 67.0
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 5.9e-27 124.4 118 55.9
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 5.9e-27 124.4 118 55.9
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 5.9e-27 124.4 109 67.0
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 5.9e-27 124.4 118 56.8
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.0e-26 123.6 124 62.1
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.3e-26 123.2 118 59.3
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.7e-26 122.9 118 53.4
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.7e-26 122.9 120 56.7
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.7e-26 122.9 121 62.8
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.3e-26 122.5 109 66.1
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 3.0e-26 122.1 118 61.0
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.0e-26 122.1 116 57.8
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 3.9e-26 121.7 122 61.5
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 3.9e-26 121.7 109 66.1
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 5.0e-26 121.3 118 55.9
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 5.0e-26 121.3 122 59.8
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 5.0e-26 121.3 122 59.8
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.1e-25 120.2 120 55.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.5e-25 119.8 120 55.0
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.5e-25 119.8 120 55.0
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.5e-25 119.8 120 55.0
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 4.3e-25 118.2 110 60.9
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 5.6e-25 117.9 117 58.1
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 7.3e-25 117.5 117 57.3
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.2e-24 116.7 117 56.4
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 2.8e-24 115.5 124 54.0
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 6.2e-24 114.4 117 56.4
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 8.0e-24 114.0 110 60.9
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.4e-23 113.2 124 55.6
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.4e-23 113.2 118 56.8
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.8e-23 112.8 116 55.2
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.1e-23 112.1 116 55.2
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 4.0e-23 111.7 122 55.7
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.4e-20 103.2 121 55.4
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.2e-20 102.1 120 54.2
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.2e-20 102.1 63 90.5
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 9.2e-20 100.5 122 51.6
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.0e-19 99.4 78 67.9
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.7e-19 99.0 116 50.9
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 2.7e-19 99.0 106 54.7
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 6.0e-19 97.8 125 51.2
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 7.8e-19 97.4 122 53.3
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.0e-18 97.1 116 50.0
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 6.6e-18 94.4 122 54.9
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 4.3e-17 91.7 122 47.5
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 2.3e-15 85.9 81 61.7
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 4.0e-15 85.1 134 50.0
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 6.8e-15 84.3 98 52.0
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 4.4e-14 81.6 111 46.8
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 7.5e-14 80.9 112 47.3
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.7e-13 79.7 127 43.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 3.0e-10 68.9 122 45.9
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-09 66.6 57 64.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 4.3e-09 65.1 87 43.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 5.6e-09 64.7 79 49.4
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.5e-06 56.6 87 39.1
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.4e-06 55.1 78 39.7


User provided reference genes

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