Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 0.0e+00 2481.4 1257 100.0
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 0.0e+00 1306.2 1211 60.4
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1175.2 1218 55.0
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1133.6 1205 56.1
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 0.0e+00 1131.7 1234 52.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1111.3 1215 54.2
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 0.0e+00 1095.5 1238 52.4
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1094.0 1256 52.5
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1092.8 1215 52.4
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 0.0e+00 1087.8 1268 50.2
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1084.7 1222 52.0
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 3.4e-311 1072.0 1215 50.3
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 8.8e-307 1057.4 1221 51.3
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 3.1e-304 1048.9 1232 49.1
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 3.8e-302 1042.0 1215 50.8
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 3.0e-299 1032.3 1268 48.7
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 8.8e-299 1030.8 1223 48.9
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 6.3e-297 1024.6 1212 49.7
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 1.4e-296 1023.5 1239 49.1
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 3.1e-296 1022.3 1251 49.8
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 1.1e-293 1013.8 1215 49.6
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 4.4e-290 1001.9 1223 48.7
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 3.1e-288 995.7 1220 48.4
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 8.6e-286 987.6 1227 51.5
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 4.2e-285 985.3 1224 48.0
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 1.5e-282 976.9 1227 49.6
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 4.4e-282 975.3 1141 50.7
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 2.7e-279 966.1 1215 47.9
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 7.8e-279 964.5 1249 48.6
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.9e-277 959.9 1017 51.6
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 5.6e-277 958.4 1258 47.7
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 1.6e-276 956.8 1149 50.8
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 4.7e-276 955.3 1235 49.1
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 6.1e-276 954.9 1209 48.5
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 2.3e-275 953.0 1330 46.9
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.0e-275 952.6 1016 51.5
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 1.7e-273 946.8 1221 48.6
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.7e-273 946.8 1243 47.5
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.6e-271 940.3 1204 46.7
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.5e-269 932.9 1217 47.4
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 5.6e-269 931.8 1244 45.4
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 8.0e-268 927.9 1230 45.5
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.1e-267 927.5 1223 47.3
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 8.9e-267 924.5 1215 48.0
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.2e-266 924.1 1247 46.2
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.9e-265 919.5 1268 44.2
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 2.5e-261 906.4 1203 46.5
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 2.1e-260 903.3 1205 45.5
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.8e-260 902.9 1230 46.0
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 3.6e-260 902.5 1042 49.7
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.4e-259 900.6 1233 45.9
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.8e-259 900.2 1216 45.9
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.3e-259 899.8 1096 48.0
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 8.9e-259 897.9 1025 50.5
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.5e-258 897.1 1230 46.2
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 1.4e-256 890.6 1234 44.2
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 1.4e-256 890.6 1255 43.5
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 5.4e-256 888.6 1226 43.6
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 5.4e-256 888.6 1292 43.2
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 9.2e-256 887.9 1258 42.7
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.7e-255 886.3 1223 43.8
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 2.7e-255 886.3 626 71.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.7e-254 883.6 1290 44.0
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.9e-254 882.5 1316 42.1
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 1.6e-252 877.1 1222 45.0
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 6.2e-252 875.2 1043 48.0
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 8.1e-252 874.8 1183 45.4
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 1.8e-251 873.6 1183 44.9
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.7e-249 867.1 1234 44.1
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 3.8e-249 865.9 915 52.1
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 2.4e-248 863.2 1040 48.6
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.1e-245 854.4 1215 42.8
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.1e-243 847.8 1225 42.6
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 4.0e-243 845.9 1254 42.7
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 6.9e-243 845.1 1230 42.8
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 2.6e-242 843.2 649 64.1
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.4e-242 842.8 1296 41.0
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.6e-239 833.9 1043 47.6
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 2.8e-236 823.2 1244 41.9
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 9.0e-235 818.1 1223 42.1
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.5e-234 817.4 1225 43.3
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.5e-234 817.4 1225 43.3
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.6e-234 816.6 789 54.5
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 6.7e-230 802.0 1026 48.1
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 2.1e-228 797.0 1313 39.5
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 3.1e-227 793.1 1048 46.8
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 9.9e-226 788.1 1216 41.0
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.8e-222 777.3 1161 43.5
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 6.7e-222 775.4 1152 43.3
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.3e-220 771.2 1248 40.3
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 1.6e-220 770.8 1050 44.2
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 3.1e-219 766.5 1231 40.0
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.2e-218 764.6 1233 41.1
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 2.6e-218 763.5 1220 40.7
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 5.8e-218 762.3 1246 40.4
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 8.4e-217 758.4 1231 39.9
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 7.1e-216 755.4 677 57.6
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.2e-215 754.6 1264 39.5
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.3e-212 744.6 705 55.0
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.4e-208 731.1 1019 46.0
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 2.5e-200 703.7 968 45.0
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.7e-197 692.6 957 43.7
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.7e-196 691.0 951 46.0
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 2.9e-185 653.7 875 45.5
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 4.1e-179 633.3 1172 37.7
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 7.5e-173 612.5 644 51.7
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.0e-157 561.2 516 58.3
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 4.1e-155 553.5 693 48.9
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.6e-154 551.6 886 42.7
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.6e-151 540.4 744 44.1
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 8.0e-151 539.3 455 60.4
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.5e-141 508.4 716 45.7
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.1e-118 432.6 752 38.2
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.2e-115 420.6 749 38.5
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 2.1e-114 418.3 654 39.9
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 4.0e-110 404.1 1022 33.3
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 5.3e-110 403.7 1022 33.2
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.5e-107 394.8 343 59.5
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 7.4e-104 383.3 316 63.0
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.1e-102 379.4 1154 30.4
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.3e-100 372.5 779 37.7
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 4.2e-91 340.9 298 59.1
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.1e-86 324.3 294 57.5
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 4.4e-80 304.3 262 56.9
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.6e-74 284.6 350 46.6
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 5.3e-70 270.8 409 37.9
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.0e-52 213.4 542 39.3
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.0e-40 172.6 614 30.6
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 4.1e-30 138.3 540 26.1
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 7.1e-30 137.5 281 34.9
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.1e-27 130.2 291 30.2
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 1.6e-26 126.3 275 33.8
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 3.2e-14 85.5 349 28.9
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 3.1e-09 68.9 146 37.0
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 6.9e-09 67.8 146 34.9
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 5.8e-08 64.7 58 50.0
MBI03_g13048_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 4.9e-07 61.6 55 61.8


User provided reference genes

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