Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.9e-185 651.7 324 100.0
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 3.3e-149 531.9 333 81.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.2e-138 496.9 344 75.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 5.1e-134 481.5 341 73.9
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.5e-133 479.9 319 76.5
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 4.3e-133 478.4 344 73.8
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 8.2e-132 474.2 348 72.1
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.4e-130 468.8 309 76.7
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.2e-129 466.1 340 72.1
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 3.8e-129 465.3 336 71.4
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 3.8e-129 465.3 336 74.4
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 6.5e-129 464.5 342 70.8
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.5e-129 464.5 340 72.1
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 1.4e-128 463.4 331 71.6
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.2e-128 461.8 323 73.4
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.6e-127 459.9 336 74.1
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 2.1e-127 459.5 325 72.9
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.8e-126 456.4 278 80.2
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 3.0e-126 455.7 328 71.3
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 5.1e-126 454.9 323 71.5
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 5.1e-126 454.9 326 72.4
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 8.8e-126 454.1 331 71.3
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 2.0e-125 453.0 329 72.3
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.6e-125 452.6 334 70.7
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 5.7e-125 451.4 305 74.1
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 7.4e-125 451.1 327 70.0
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 9.7e-125 450.7 329 70.8
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.8e-124 449.1 339 70.5
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 4.8e-124 448.4 341 68.6
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 4.8e-124 448.4 329 70.2
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 8.2e-124 447.6 333 69.7
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 8.2e-124 447.6 333 69.7
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.8e-123 446.4 334 69.8
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.8e-123 446.4 334 69.8
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 3.1e-123 445.7 323 70.9
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 7.0e-123 444.5 346 67.3
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.3e-121 440.3 337 69.1
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.3e-121 440.3 327 69.4
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 3.8e-121 438.7 328 69.8
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 5.0e-121 438.3 334 69.8
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 4.2e-120 435.3 319 71.2
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.2e-120 435.3 323 70.3
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 5.5e-120 434.9 325 68.9
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.2e-119 433.7 324 69.4
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.6e-119 433.3 325 67.4
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 4.7e-119 431.8 324 68.2
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 3.0e-118 429.1 332 66.3
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 3.9e-118 428.7 325 69.8
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 5.2e-118 428.3 327 68.8
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 5.2e-118 428.3 329 68.7
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 5.2e-118 428.3 318 69.5
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 6.7e-118 427.9 303 71.9
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.1e-117 427.2 326 68.1
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.5e-117 426.8 328 69.8
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 7.4e-117 424.5 335 67.5
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 9.7e-117 424.1 323 68.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 9.7e-117 424.1 341 66.3
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.3e-116 423.7 336 68.2
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.7e-116 423.3 322 68.9
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 3.7e-116 422.2 308 68.2
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 6.3e-116 421.4 257 77.4
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 8.2e-116 421.0 336 67.9
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.1e-115 420.6 327 66.7
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.8e-115 419.9 336 68.2
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 2.6e-114 416.0 332 66.9
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 3.5e-114 415.6 336 68.8
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.5e-112 410.2 253 77.9
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 3.2e-112 409.1 225 84.0
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 4.2e-112 408.7 321 66.0
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 5.5e-112 408.3 333 65.5
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 6.1e-111 404.8 245 77.6
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 8.0e-111 404.4 222 86.0
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 5.2e-110 401.7 282 71.3
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 2.0e-109 399.8 332 64.8
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.7e-108 396.7 315 66.3
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 3.7e-108 395.6 337 63.2
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 5.3e-107 391.7 326 65.6
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 7.0e-107 391.3 332 62.7
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 3.2e-104 382.5 330 63.6
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 3.2e-104 382.5 321 62.9
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.2e-103 380.6 336 62.5
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 8.0e-103 377.9 330 60.3
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 6.8e-102 374.8 337 59.9
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.5e-101 373.6 332 60.8
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 5.4e-99 365.2 206 82.5
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.8e-95 352.8 323 60.4
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.1e-95 351.7 324 60.2
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.0e-94 350.9 336 61.6
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.6e-93 346.3 301 63.5
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.1e-91 340.9 270 69.6
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.2e-91 339.3 255 69.8
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 5.9e-90 335.1 364 52.7
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.3e-89 334.0 257 62.3
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 3.3e-88 329.3 236 65.3
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 5.6e-88 328.6 225 67.6
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.8e-86 323.6 490 43.7
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 7.8e-82 308.1 259 66.0
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 3.1e-78 296.2 259 59.5
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.1e-75 287.7 322 48.8
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.2e-74 284.3 277 53.4
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 7.3e-72 275.0 332 51.2
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.1e-70 271.2 167 77.2
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 2.1e-66 256.9 320 46.6
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 2.3e-65 253.4 231 64.1
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 5.6e-64 248.8 251 53.8
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.7e-63 245.7 220 58.2
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 4.4e-61 239.2 184 71.2
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.8e-58 228.4 213 58.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 2.5e-56 223.4 205 52.2
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 7.3e-56 221.9 245 54.7
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.8e-54 217.2 226 55.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.3e-49 200.3 163 66.3
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 3.9e-41 172.9 97 80.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.8e-36 156.4 105 72.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.1e-30 136.7 150 50.0
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.5e-27 127.1 62 91.9
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.6e-26 124.4 352 27.3
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 3.7e-23 113.2 146 50.0
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.9e-17 93.2 104 51.0
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.5e-12 75.9 39 92.3
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 4.7e-10 69.7 171 40.9
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-09 68.2 58 60.3
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-09 68.2 58 60.3
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.0e-06 55.8 57 56.1


User provided reference genes

Program Settings