Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 3.2e-158 561.6 267 100.0
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 8.0e-125 450.7 268 78.7
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 8.0e-125 450.7 265 79.6
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 1.4e-121 439.9 268 76.1
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.9e-119 432.2 241 80.5
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.1e-118 430.3 241 80.5
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 1.2e-117 426.8 267 74.5
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 8.9e-116 420.6 268 72.8
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.2e-115 420.2 268 72.8
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 4.4e-115 418.3 268 71.3
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 2.2e-114 416.0 266 72.9
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.9e-114 415.6 268 72.8
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 3.7e-114 415.2 269 72.5
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 6.3e-114 414.5 265 71.3
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.1e-113 413.7 267 71.9
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 2.4e-113 412.5 266 69.5
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 7.0e-113 411.0 267 73.0
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 9.2e-113 410.6 261 73.9
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 1.6e-112 409.8 267 71.2
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 2.7e-112 409.1 268 71.6
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 3.5e-112 408.7 268 72.4
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 3.5e-112 408.7 267 68.9
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 4.6e-112 408.3 267 70.8
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 1.0e-111 407.1 266 71.1
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 1.7e-111 406.4 267 68.9
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.7e-111 406.4 267 68.9
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.3e-111 406.0 267 68.5
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 2.9e-111 405.6 268 69.0
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 6.6e-111 404.4 267 68.2
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 6.6e-111 404.4 258 71.3
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 9.5e-110 400.6 268 68.7
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 4.7e-109 398.3 268 68.7
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 8.0e-109 397.5 267 69.3
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 1.4e-108 396.7 257 71.6
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.8e-108 396.4 267 68.2
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.8e-108 396.4 267 68.2
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 6.8e-108 394.4 265 68.7
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.5e-107 393.3 267 68.9
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 2.6e-107 392.5 254 72.4
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.2e-106 389.4 269 69.1
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.4e-105 386.7 270 68.9
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 2.4e-105 386.0 268 65.7
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 3.2e-105 385.6 268 67.9
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 4.1e-105 385.2 258 67.8
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 1.6e-104 383.3 268 66.8
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 1.6e-104 383.3 268 67.9
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 3.5e-104 382.1 259 70.3
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.7e-103 379.8 264 65.9
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 3.0e-103 379.0 268 65.3
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 5.0e-103 378.3 264 65.5
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 5.0e-103 378.3 268 64.6
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 6.6e-103 377.9 267 63.7
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 8.6e-103 377.5 267 64.8
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 1.5e-102 376.7 266 64.7
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.9e-102 376.3 270 67.4
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 2.5e-102 375.9 269 66.9
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 3.3e-102 375.6 272 67.3
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 2.8e-101 372.5 271 63.8
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 3.6e-101 372.1 268 63.4
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 3.6e-101 372.1 269 63.9
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 4.7e-101 371.7 268 63.8
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 8.1e-101 370.9 247 67.2
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 8.1e-101 370.9 246 68.3
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 3.1e-100 369.0 263 62.7
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.0e-100 368.6 269 66.5
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.2e-99 367.1 268 63.4
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.5e-99 366.7 267 63.7
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.4e-99 365.5 267 63.7
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 4.4e-99 365.2 268 63.1
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 5.8e-99 364.8 275 64.0
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.7e-98 363.2 253 66.4
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 2.2e-98 362.8 267 62.9
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 3.7e-98 362.1 276 63.4
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 2.4e-97 359.4 264 65.9
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 3.2e-97 359.0 266 63.2
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 1.2e-96 357.1 267 63.3
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 9.5e-94 347.4 265 61.5
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.6e-93 346.7 268 61.9
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 1.4e-92 343.6 271 59.8
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 2.3e-92 342.8 268 60.8
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.0e-92 342.0 269 61.0
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 6.8e-92 341.3 275 59.6
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 2.4e-89 332.8 269 58.4
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 7.1e-89 331.3 261 60.5
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.6e-88 330.1 261 60.9
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 3.5e-88 328.9 265 59.6
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 1.3e-87 327.0 267 60.3
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.7e-87 326.6 265 61.1
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 6.6e-87 324.7 262 61.1
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 1.1e-86 323.9 255 61.6
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 1.1e-86 323.9 255 61.6
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.1e-86 323.9 223 67.7
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.5e-86 323.6 255 62.0
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.9e-86 323.2 268 59.7
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 2.5e-86 322.8 268 59.3
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 1.2e-85 320.5 256 60.2
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 6.2e-85 318.2 257 59.1
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 8.1e-85 317.8 267 58.4
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 4.4e-83 312.0 264 59.8
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.7e-82 310.1 258 57.8
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.7e-82 310.1 274 57.3
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 2.9e-82 309.3 254 59.1
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.7e-80 302.8 186 75.3
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 3.9e-79 298.9 224 62.1
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 6.6e-79 298.1 200 70.0
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.1e-78 297.4 253 58.5
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.5e-78 297.0 246 59.3
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.5e-78 297.0 202 67.3
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 9.0e-76 287.7 266 53.0
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 2.2e-74 283.1 215 61.4
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 9.3e-73 277.7 266 51.9
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.5e-70 269.6 216 61.6
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 5.6e-70 268.5 250 54.4
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 3.6e-69 265.8 240 56.2
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.4e-68 263.8 239 53.1
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 3.4e-67 259.2 266 50.0
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.4e-65 253.1 183 65.0
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 4.2e-65 252.3 243 51.4
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.1e-63 245.4 200 61.0
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 7.4e-62 241.5 162 70.4
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 2.1e-61 240.0 173 65.3
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 1.1e-52 211.1 173 59.5
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.4e-52 209.9 221 49.8
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 3.1e-52 209.5 133 70.7
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 5.3e-52 208.8 161 62.7
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 1.9e-49 200.3 268 43.3
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.2e-49 199.5 220 50.5
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 3.2e-41 172.9 184 46.2
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 2.3e-39 166.8 126 61.1
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 6.5e-34 148.7 147 53.7
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 7.7e-27 125.2 88 71.6
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.5e-22 108.6 159 39.6
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 9.7e-22 108.2 80 63.8
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 7.0e-20 102.1 74 64.9
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.7e-18 97.4 114 40.4
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 8.5e-18 95.1 75 60.0
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 9.4e-17 91.7 64 57.8
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 1.2e-16 91.3 67 53.7
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 4.0e-15 86.3 214 31.3
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 2.3e-07 60.5 112 33.0


User provided reference genes

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