Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05471 Nelumbo nucifera HOM05D002794 ORTHO05D030019 1.8e-46 188.7 86 100.0
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 1.2e-26 122.9 59 94.9
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 1.2e-26 122.9 59 94.9
SEGI_11918 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 1.2e-26 122.9 59 94.9
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 1.2e-26 122.9 59 94.9
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 1.2e-26 122.9 59 94.9
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 1.2e-26 122.9 59 94.9
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 1.6e-26 122.5 59 93.2
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 1.6e-26 122.5 59 93.2
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 1.6e-26 122.5 59 93.2
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 1.6e-26 122.5 59 93.2
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 1.6e-26 122.5 59 93.2
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 2.7e-26 121.7 59 93.2
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 2.7e-26 121.7 59 93.2
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 2.7e-26 121.7 59 93.2
ATR0006G055 Amborella trichopoda HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
ATR0618G401 Amborella trichopoda HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
PSO541G2705 Papaver somniferum HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
PSO675G3577 Papaver somniferum HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 3.6e-26 121.3 59 93.2
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 4.7e-26 120.9 63 87.3
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 8.0e-26 120.2 59 91.5
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 8.0e-26 120.2 59 91.5
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 8.0e-26 120.2 59 91.5
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 8.0e-26 120.2 59 91.5
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 8.0e-26 120.2 59 91.5
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 8.0e-26 120.2 59 91.5
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 8.0e-26 120.2 59 91.5
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 8.0e-26 120.2 73 80.8
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 8.0e-26 120.2 59 89.8
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 1.0e-25 119.8 59 91.5
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 1.0e-25 119.8 59 91.5
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 1.0e-25 119.8 59 93.2
AagrBONN_evm.TU.Sc2ySwM_344.3345 Anthoceros agrestis HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 89.8
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 89.8
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 89.8
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 89.8
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 89.8
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 89.8
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 89.8
Mapoly0051s0020 Marchantia polymorpha HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 89.8
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 93.2
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 93.2
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 1.8e-25 119.0 59 93.2
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 2.3e-25 118.6 59 89.8
Pp3c14_10510 Physcomitrium patens HOM05D002794 ORTHO05D003763 2.3e-25 118.6 59 89.8
Pp3c17_13490 Physcomitrium patens HOM05D002794 ORTHO05D003763 2.3e-25 118.6 59 89.8
Sc05g0007870 Simmondsia chinensis HOM05D002794 ORTHO05D003763 2.3e-25 118.6 59 88.1
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 2.3e-25 118.6 59 88.1
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 3.0e-25 118.2 59 89.8
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 4.0e-25 117.9 59 91.5
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 4.0e-25 117.9 59 89.8
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 4.0e-25 117.9 59 89.8
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 4.0e-25 117.9 59 91.5
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 4.0e-25 117.9 59 88.1
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 4.0e-25 117.9 59 89.8
Zm00001eb229010 Zea mays HOM05D002794 ORTHO05D003763 4.0e-25 117.9 59 91.5
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 91.5
Aqoxy5G00583 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 91.5
AUR62014781 Chenopodium quinoa HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 88.1
AUR62016968 Chenopodium quinoa HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 88.1
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 89.8
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 91.5
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 91.5
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 91.5
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 5.2e-25 117.5 59 88.1
CBR_g29963 Chara braunii HOM05D002794 ORTHO05D003763 8.8e-25 116.7 59 88.1
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 8.8e-25 116.7 59 88.1
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 8.8e-25 116.7 59 88.1
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.2e-24 116.3 59 89.8
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 1.2e-24 116.3 59 89.8
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 1.2e-24 116.3 59 89.8
Ciclev10006607m.g Citrus clementina HOM05D002794 ORTHO05D003763 2.0e-24 115.5 59 88.1
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 2.6e-24 115.2 59 88.1
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.6e-24 115.2 59 88.1
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.6e-24 115.2 59 88.1
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 2.6e-24 115.2 59 88.1
Lj1g0005259 Lotus japonicus HOM05D002794 ORTHO05D003763 2.6e-24 115.2 74 75.7
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 2.6e-24 115.2 59 88.1
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 3.3e-24 114.8 59 89.8
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 3.3e-24 114.8 59 88.1
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 9.7e-24 113.2 59 86.4
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 9.7e-24 113.2 59 86.4
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 9.7e-24 113.2 59 86.4
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 9.7e-24 113.2 59 86.4
Peaxi162Scf00535g00058 Petunia axillaris HOM05D002794 ORTHO05D003763 9.7e-24 113.2 60 86.7
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 9.7e-24 113.2 59 86.4
Hund21250 Selenicereus undatus HOM05D002794 ORTHO05D003763 9.7e-24 113.2 61 83.6
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.3e-23 112.8 67 80.6
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.3e-23 112.8 67 80.6
Aqoxy7G01746 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 2.2e-23 112.1 59 86.4
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 2.8e-23 111.7 67 82.1
Actinidia01901 Actinidia chinensis HOM05D002794 ORTHO05D003763 4.8e-23 110.9 61 85.2
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.8e-23 110.9 75 73.3
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.8e-23 110.9 75 73.3
Atru.chr1.584 Acer truncatum HOM05D002794 ORTHO05D003763 8.3e-23 110.2 59 83.1
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 8.3e-23 110.2 66 78.8
BcaB03g11685 Brassica carinata HOM05D002794 ORTHO05D003763 1.1e-22 109.8 59 83.1
BcaC01g00687 Brassica carinata HOM05D002794 ORTHO05D003763 1.1e-22 109.8 59 83.1
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 1.1e-22 109.8 59 83.1
A08p15050 Brassica napus HOM05D002794 ORTHO05D003763 1.1e-22 109.8 59 83.1
C03p83140 Brassica napus HOM05D002794 ORTHO05D003763 1.1e-22 109.8 59 83.1
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 1.1e-22 109.8 59 84.7
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 1.4e-22 109.4 59 83.1
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 1.4e-22 109.4 59 83.1
COL.COLO4_31110 Corchorus olitorius HOM05D002794 ORTHO05D003763 1.4e-22 109.4 58 82.8
Atru.chr4.2241 Acer truncatum HOM05D002794 ORTHO05D003763 1.8e-22 109.0 59 79.7
RhsimUnG0043800 Rhododendron simsii HOM05D002794 ORTHO05D003763 1.8e-22 109.0 84 66.7
vmacro23256 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 1.8e-22 109.0 63 77.8
Lj1g0004029 Lotus japonicus HOM05D002794 ORTHO05D003763 3.1e-22 108.2 59 83.1
RcHm_v2.0_Chr2g0163041 Rosa chinensis HOM05D002794 ORTHO05D003763 4.1e-22 107.8 59 81.4
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 4.1e-22 107.8 83 66.3
vmacro04586 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 7.0e-22 107.1 63 76.2
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.2e-21 106.3 67 77.6
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.2e-21 106.3 67 77.6
DCAR_001736 Daucus carota HOM05D002794 ORTHO05D003763 1.6e-21 105.9 59 78.0
Lj1g0008967 Lotus japonicus HOM05D002794 ORTHO05D003763 2.0e-21 105.5 65 75.4
MCO05G100 Micromonas commoda HOM05D002794 ORTHO05D003763 5.9e-21 104.0 74 66.2
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 7.7e-21 103.6 91 59.3
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 7.7e-21 103.6 100 55.0
FvH4_6g45300 Fragaria vesca HOM05D002794 ORTHO05D003763 1.3e-20 102.8 59 78.0
FAN02G3067 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.3e-20 102.8 59 78.0
FAN14G4862 Fragaria x ananassa HOM05D002794 ORTHO05D003763 1.3e-20 102.8 59 78.0
Peaxi162Scf22083g00001 Petunia axillaris HOM05D002794 ORTHO05D003763 1.3e-20 102.8 56 85.7
Aqoxy7G01777 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 1.7e-20 102.4 58 79.3
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 1.7e-20 102.4 68 72.1
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 2.2e-20 102.1 83 62.7
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 2.9e-20 101.7 68 72.1
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 2.9e-20 101.7 92 58.7
Cre12.g514450 Chlamydomonas reinhardtii HOM05D002794 ORTHO05D003763 3.8e-20 101.3 63 69.8
Peaxi162Scf00535g00054 Petunia axillaris HOM05D002794 ORTHO05D003763 3.8e-20 101.3 55 85.5
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 8.5e-20 100.1 91 58.2
Rhsim08G0091600 Rhododendron simsii HOM05D002794 ORTHO05D003763 3.2e-19 98.2 59 74.6
BolC3t20597H Brassica oleracea HOM05D002794 ORTHO05D003763 4.2e-19 97.8 79 62.0
BraA08t33486Z Brassica rapa HOM05D002794 ORTHO05D003763 4.2e-19 97.8 79 62.0
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 7.2e-19 97.1 94 54.3
PRCOL_00004721 Prasinoderma coloniale HOM05D002794 ORTHO05D003763 7.2e-19 97.1 58 72.4
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 1.2e-18 96.3 92 55.4
Ca_25735_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 6.1e-18 94.0 62 74.2
Rhsim07G0122000 Rhododendron simsii HOM05D002794 ORTHO05D003763 1.8e-17 92.4 63 65.1
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 6.8e-17 90.5 128 43.0
Haze_27100 Corylus avellana HOM05D002794 ORTHO05D003763 1.3e-15 86.3 67 58.2
Carub.0007s2870 Capsella rubella HOM05D002794 ORTHO05D003763 1.7e-15 85.9 50 78.0
SMO139G0083 Selaginella moellendorffii HOM05D002794 ORTHO05D003763 2.2e-15 85.5 64 57.8
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 2.0e-13 79.0 44 84.1
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 1.3e-12 76.3 44 77.3
SMO146G0248 Selaginella moellendorffii HOM05D002794 ORTHO05D003763 1.3e-12 76.3 36 88.9
Lalb_Chr16g0383571 Lupinus albus HOM05D002794 ORTHO05D003763 3.8e-12 74.7 41 82.9
Lj4g0009173 Lotus japonicus HOM05D002794 ORTHO05D030019 8.6e-12 73.6 37 86.5
RcHm_v2.0_Chr5g0006921 Rosa chinensis HOM05D002794 ORTHO05D019681 3.3e-11 71.6 60 61.7
RcHm_v2.0_Chr5g0007041 Rosa chinensis HOM05D002794 ORTHO05D003763 1.2e-10 69.7 61 60.7
Dinv40533 Davidia involucrata HOM05D002794 ORTHO05D001608 2.0e-08 62.4 59 55.9
Lj4g0008775 Lotus japonicus HOM05D002794 ORTHO05D030019 2.6e-08 62.0 34 76.5
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 4.9e-07 57.8 73 45.2
TPR.G15437 Trifolium pratense HOM05D002794 ORTHO05D030019 4.9e-07 57.8 48 58.3
FvH4_6g45270 Fragaria vesca HOM05D002794 ORTHO05D025505 6.3e-07 57.4 45 48.9
FAN14G1424 Fragaria x ananassa HOM05D002794 ORTHO05D025505 6.3e-07 57.4 45 48.9
VMungo0720G2142 Vigna mungo HOM05D008589 ORTHO05D010715 1.8e-06 55.8 34 70.6


User provided reference genes

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