Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 1.2e-110 403.3 219 100.0
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 6.8e-90 334.3 196 86.7
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 4.4e-89 331.6 199 85.9
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 2.2e-88 329.3 195 87.7
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 6.4e-88 327.8 193 86.0
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 4.2e-87 325.1 194 84.0
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 2.7e-86 322.4 193 84.5
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.3e-85 320.1 190 86.3
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 1.7e-85 319.7 187 87.2
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 2.3e-85 319.3 190 85.8
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 3.0e-85 318.9 191 83.8
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 3.0e-85 318.9 191 83.8
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 1.1e-84 317.0 192 84.9
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.1e-84 317.0 190 84.7
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.5e-84 316.6 192 84.4
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 1.9e-84 316.2 190 85.3
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 2.5e-84 315.8 194 83.0
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 4.3e-84 315.1 194 82.0
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 7.3e-84 314.3 190 84.7
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 1.3e-83 313.5 191 83.2
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 4.8e-83 311.6 192 83.3
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 8.1e-83 310.8 198 82.3
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 1.1e-82 310.5 195 82.1
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 1.4e-82 310.1 196 79.1
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 1.8e-82 309.7 196 80.1
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.0e-82 308.5 195 84.6
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 6.9e-82 307.8 187 84.0
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 1.5e-81 306.6 186 82.8
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 1.5e-81 306.6 196 80.6
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 3.4e-81 305.4 192 81.2
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 3.4e-81 305.4 195 82.1
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 4.5e-81 305.1 195 81.0
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 5.8e-81 304.7 186 82.3
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 7.6e-81 304.3 194 79.9
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 1.7e-80 303.1 191 79.6
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.7e-80 303.1 198 81.3
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.7e-80 303.1 192 80.7
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 2.2e-80 302.8 192 80.2
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 2.9e-80 302.4 192 80.2
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 4.9e-80 301.6 217 75.1
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 4.9e-80 301.6 187 81.3
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 4.9e-80 301.6 200 79.5
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 8.4e-80 300.8 194 78.9
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 1.4e-79 300.1 192 80.2
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 1.9e-79 299.7 192 79.7
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 2.4e-79 299.3 192 80.7
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 3.2e-79 298.9 197 79.7
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 3.2e-79 298.9 185 83.2
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 4.2e-79 298.5 191 78.5
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 7.1e-79 297.7 177 83.6
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 1.2e-78 297.0 198 80.8
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.2e-78 297.0 178 85.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.1e-78 296.2 188 78.7
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.1e-78 296.2 188 78.7
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 2.1e-78 296.2 194 78.4
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.6e-78 295.0 188 78.2
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 4.6e-78 295.0 195 79.5
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 1.3e-77 293.5 197 79.2
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.3e-77 293.5 189 79.4
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 3.0e-77 292.4 246 65.9
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 3.0e-77 292.4 246 65.9
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 6.6e-77 291.2 194 76.8
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 8.7e-77 290.8 189 78.3
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.1e-76 290.4 192 78.1
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.9e-76 289.7 198 79.8
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 5.6e-76 288.1 186 79.6
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.3e-75 287.0 198 79.3
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 1.3e-75 287.0 194 76.8
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 2.1e-75 286.2 188 77.1
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.8e-74 283.1 191 75.4
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 2.4e-74 282.7 191 75.9
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 3.1e-74 282.3 189 75.7
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 3.1e-74 282.3 189 75.7
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 5.3e-74 281.6 191 75.9
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 6.9e-74 281.2 189 75.7
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 9.0e-74 280.8 186 79.0
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 9.0e-74 280.8 197 75.6
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 1.2e-73 280.4 189 75.1
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 1.5e-73 280.0 187 75.4
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 2.0e-73 279.6 187 75.4
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 5.8e-73 278.1 187 75.4
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 5.8e-73 278.1 201 73.6
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 9.9e-73 277.3 210 73.3
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 2.2e-72 276.2 190 74.7
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 1.9e-71 273.1 197 73.6
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 3.5e-70 268.9 190 75.3
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 8.7e-69 264.2 184 72.8
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 4.8e-67 258.5 165 82.4
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 2.9e-64 249.2 188 67.6
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 4.6e-62 241.9 191 66.5
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 6.7e-61 238.0 194 67.0
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 3.3e-60 235.7 164 72.0
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 2.1e-59 233.0 149 79.9
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 2.8e-59 232.6 141 84.4
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 8.2e-59 231.1 188 64.9
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.4e-58 230.3 166 74.1
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.1e-58 228.8 192 65.6
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-57 226.5 192 64.6
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 1.4e-50 203.8 254 52.8
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 2.2e-48 196.4 136 76.5
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 8.5e-48 194.5 112 85.7
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.4e-47 193.7 108 89.8
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 1.4e-47 193.7 131 80.2
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 7.2e-47 191.4 108 88.0
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 1.2e-46 190.7 140 70.0
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 2.1e-46 189.9 141 73.0
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 1.0e-40 171.0 116 74.1
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 6.1e-38 161.8 186 50.0
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.0e-37 161.0 198 48.0
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 1.8e-37 160.2 86 93.0
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 1.4e-34 150.6 101 75.2
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.4e-34 149.8 111 73.0
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 2.0e-33 146.7 138 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 7.7e-33 144.8 140 55.0
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 4.4e-28 129.0 140 57.9
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 3.6e-22 109.4 131 49.6
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 4.0e-21 105.9 62 85.5
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 6.8e-21 105.1 194 36.1
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.9e-17 92.0 81 58.0
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.4e-13 80.9 81 54.3
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 4.0e-13 79.3 50 72.0
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 2.6e-12 76.6 109 45.9
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 2.9e-08 63.2 50 66.0
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.0e-08 62.4 54 55.6


User provided reference genes

Program Settings