Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 4.6e-94 347.8 168 100.0
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 5.5e-63 244.6 122 91.8
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.3e-56 223.4 122 81.1
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.1e-50 202.2 120 73.3
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.1e-50 201.8 120 72.5
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 9.1e-50 200.7 122 73.8
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 8.5e-48 194.1 121 71.1
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.5e-47 192.6 120 69.2
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 3.2e-47 192.2 122 71.3
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 7.2e-47 191.0 121 69.4
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.6e-46 189.9 120 69.2
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 4.7e-46 188.3 139 64.0
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.0e-44 183.0 122 66.4
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 5.7e-44 181.4 122 64.8
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 5.7e-44 181.4 128 63.3
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.3e-43 180.3 120 62.5
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 2.2e-43 179.5 122 63.9
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 3.7e-43 178.7 122 65.6
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 3.7e-43 178.7 128 62.5
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.8e-42 176.4 123 64.2
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 1.8e-42 176.4 128 63.3
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 2.4e-42 176.0 165 53.9
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.1e-42 175.3 122 64.8
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.1e-42 175.3 122 64.8
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 1.2e-41 173.7 120 61.7
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.2e-41 173.7 119 63.9
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.6e-41 173.3 122 63.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.6e-41 173.3 146 57.5
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.6e-41 173.3 146 57.5
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 2.6e-41 172.6 120 63.3
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.0e-40 170.6 120 61.7
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.7e-40 169.9 122 63.9
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.2e-40 169.5 128 59.4
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 2.2e-40 169.5 128 59.4
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.9e-40 169.1 123 61.8
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 3.8e-40 168.7 122 63.1
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 6.5e-40 167.9 128 58.6
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.1e-39 167.2 132 59.8
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.1e-39 167.2 126 59.5
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.2e-39 165.6 122 59.8
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 5.5e-39 164.9 127 59.1
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 2.1e-38 162.9 120 58.3
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.1e-38 162.9 122 60.7
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 2.1e-38 162.9 132 53.8
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 4.7e-38 161.8 128 56.2
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 4.7e-38 161.8 120 60.8
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.0e-37 160.6 162 50.0
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.4e-37 160.2 131 57.3
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.3e-37 159.5 132 51.5
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.3e-37 159.5 132 51.5
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 2.3e-37 159.5 122 56.6
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 3.0e-37 159.1 131 58.0
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 4.0e-37 158.7 122 54.9
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 5.2e-37 158.3 121 55.4
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 5.2e-37 158.3 121 55.4
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 6.7e-37 157.9 121 52.9
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 6.7e-37 157.9 121 52.9
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 6.7e-37 157.9 121 52.9
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 6.7e-37 157.9 121 52.9
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 6.7e-37 157.9 123 61.0
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 8.8e-37 157.5 120 55.8
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.6e-36 156.0 122 57.4
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 2.6e-36 156.0 120 55.8
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 3.3e-36 155.6 122 56.6
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 5.7e-36 154.8 119 53.8
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 5.7e-36 154.8 119 53.8
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 7.5e-36 154.5 127 54.3
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 9.7e-36 154.1 122 54.9
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 2.2e-35 152.9 135 49.6
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 3.7e-35 152.1 114 61.4
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 3.7e-35 152.1 166 48.2
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 3.7e-35 152.1 137 49.6
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 6.3e-35 151.4 120 55.0
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.8e-34 149.8 133 50.4
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.8e-34 149.8 106 62.3
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.8e-34 149.8 105 62.9
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 3.1e-34 149.1 162 45.7
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 7.0e-34 147.9 129 58.9
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 3.5e-33 145.6 105 63.8
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 7.7e-33 144.4 119 52.9
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 2.2e-32 142.9 134 50.0
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 3.8e-32 142.1 121 53.7
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.8e-32 142.1 120 50.8
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 1.5e-31 140.2 135 47.4
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.5e-31 139.4 121 52.9
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 2.5e-31 139.4 121 52.9
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 3.2e-31 139.0 120 52.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 4.2e-31 138.7 151 47.0
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.2e-30 137.1 119 52.1
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 1.2e-30 137.1 126 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 2.7e-30 136.0 120 49.2
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.7e-30 136.0 119 58.8
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.7e-30 136.0 120 50.0
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 1.8e-29 133.3 111 53.2
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-29 133.3 119 51.3
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 5.2e-29 131.7 118 50.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.2e-28 130.6 119 46.2
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 1.5e-28 130.2 94 50.0
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 2.6e-28 129.4 135 44.4
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 2.6e-28 129.4 120 57.5
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 4.4e-28 128.6 106 56.6
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.5e-28 127.9 137 44.5
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 4.8e-27 125.2 106 52.8
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 1.8e-26 123.2 122 48.4
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.4e-26 122.9 121 43.8
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.1e-26 122.1 121 43.0
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 2.7e-25 119.4 132 46.2
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 4.5e-25 118.6 102 51.0
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.0e-24 115.2 127 44.1
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.5e-23 113.6 121 47.1
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.6e-22 110.2 104 51.0
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.2e-20 104.0 79 51.9
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.7e-20 101.7 67 61.2
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 1.7e-19 100.1 105 44.8
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 2.8e-19 99.4 131 38.2
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 3.7e-19 99.0 67 62.7
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 4.1e-18 95.5 83 54.2
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 5.4e-18 95.1 101 49.5
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 7.0e-18 94.7 102 49.0
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.2e-18 94.4 104 48.1
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 2.3e-16 89.7 63 63.5
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.3e-16 89.7 120 39.2
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 5.0e-16 88.6 79 51.9
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.5e-15 84.3 46 73.9
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.6e-14 83.6 55 67.3
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 8.0e-14 81.3 117 41.0
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 9.8e-12 74.3 43 74.4
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.2e-11 73.2 59 50.8
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 4.1e-10 68.9 56 48.2
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 4.1e-10 68.9 40 67.5
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.2e-10 67.8 52 55.8
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.2e-09 67.4 61 50.8
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 2.3e-08 63.2 34 70.6
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.0e-08 62.0 120 30.8
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 4.3e-07 58.9 42 61.9
FAN16G3049 Fragaria x ananassa HOM05D004774 ORTHO05D005514 8.0e-06 54.7 44 54.5


User provided reference genes

Program Settings