Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1937.2 1015 100.0
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1444.5 1019 76.5
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1336.6 1016 70.6
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1327.4 1014 71.5
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1320.4 1061 68.6
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1296.6 1026 68.8
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1296.6 1020 68.8
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1284.2 1016 69.1
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1279.6 1024 68.8
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1275.0 1065 66.1
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1273.5 1019 69.2
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1271.1 1020 66.9
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1270.0 1017 68.8
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1268.1 1019 68.1
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1267.3 1018 68.3
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1256.5 1016 67.2
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1253.4 1032 66.7
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1253.0 1021 66.5
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1248.8 1019 67.6
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1248.8 1019 67.6
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1248.0 1073 65.4
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1247.6 1070 65.0
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 1029 67.0
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1246.5 1074 65.1
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1245.7 1084 65.6
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1245.0 1015 66.8
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1240.3 1020 66.1
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1239.2 1030 66.3
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1238.8 1040 66.5
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1238.4 1020 67.2
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1238.4 1074 65.5
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1237.6 1019 67.5
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1236.9 1025 66.6
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 1018 66.5
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1233.0 1018 66.7
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1233.0 1018 66.8
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1232.2 1019 66.6
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1230.3 1193 59.7
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1229.9 1018 66.4
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 1018 66.3
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1226.8 1066 64.7
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 1065 63.7
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1224.2 1065 64.1
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1221.8 1022 66.1
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1216.1 1020 65.0
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1215.3 1022 65.5
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1210.7 1058 63.8
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1209.5 1016 65.5
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1208.4 1022 65.5
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1195.6 1019 64.1
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1195.3 1073 62.5
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1195.3 1016 64.0
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1193.7 1016 63.9
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 1019 63.9
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1184.5 1018 63.9
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1182.9 1018 63.5
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1182.2 1016 63.7
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1180.6 1016 63.6
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1180.6 1016 63.6
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1180.6 1054 62.6
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1180.2 1018 63.6
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1179.1 1019 63.0
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1176.0 1019 64.1
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1176.0 1017 63.9
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1175.2 1019 64.6
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1173.7 1018 63.5
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1172.9 1018 63.8
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1172.5 1021 62.6
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1172.5 1016 64.3
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1170.2 1022 63.4
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1168.3 1046 62.7
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1164.4 1019 62.7
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1163.7 1021 62.8
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1163.3 1023 62.9
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1154.8 1019 60.1
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1151.7 1019 63.1
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1144.4 1018 61.9
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1139.0 1028 63.0
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1128.2 1020 61.8
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1126.3 875 70.3
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1123.6 1007 61.9
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1112.4 1017 60.7
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1111.7 858 70.4
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1105.9 1033 59.1
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1104.4 1032 60.6
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 1.5e-304 1049.7 861 66.6
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 2.0e-301 1039.3 911 64.1
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 5.8e-301 1037.7 947 61.5
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.2e-285 986.9 1052 53.1
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 2.0e-285 986.1 1027 56.0
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.1e-275 953.7 1088 50.0
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 1.2e-274 950.3 1084 50.6
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 6.1e-274 948.0 1016 56.0
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 3.1e-270 935.6 1027 51.1
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 5.9e-261 904.8 1022 53.7
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 2.1e-250 869.8 789 61.9
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 6.0e-213 745.3 982 48.8
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 5.8e-208 728.8 624 65.5
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.7e-207 727.2 662 62.8
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.6e-205 720.7 764 54.8
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.8e-202 709.9 843 51.8
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.1e-193 681.4 562 66.4
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 6.9e-177 625.5 696 54.6
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.4e-174 617.8 577 60.1
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 2.7e-157 560.5 1019 35.5
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 6.5e-135 486.1 359 66.6
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 3.6e-133 480.3 393 64.1
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 7.0e-129 466.1 378 65.3
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.0e-125 452.6 305 70.5
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 9.8e-123 445.7 269 82.2
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.1e-121 442.2 1029 32.4
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.6e-120 438.3 277 79.8
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 5.9e-120 436.4 270 78.9
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.5e-118 431.0 365 64.4
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 4.6e-112 410.2 294 73.5
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 8.0e-109 399.4 1310 29.0
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 6.6e-103 379.8 357 56.0
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 4.0e-100 370.5 1002 31.4
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.4e-84 318.9 315 55.6
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.4e-76 291.6 251 62.9
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.5e-75 288.9 225 71.1
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.9e-73 282.0 168 82.1
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.8e-71 275.4 202 67.8
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 1.1e-65 256.1 145 87.6
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 2.9e-58 231.5 151 76.8
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.8e-58 231.1 205 62.0
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.1e-57 229.6 208 63.0
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.5e-57 227.3 144 73.6
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.2e-49 201.1 129 72.9
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.0e-47 194.9 129 70.5
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.3e-45 189.5 105 88.6
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-45 189.1 131 69.5
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 2.4e-44 185.3 214 50.9
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 8.5e-42 176.8 277 45.1
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 2.5e-41 175.3 98 85.7
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 2.2e-37 162.2 161 55.9
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 1.1e-36 159.8 122 68.9
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-35 156.4 101 75.2
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.4e-28 132.9 167 46.7
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 1.4e-28 132.9 205 48.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 7.0e-28 130.6 85 70.6
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 1.1e-20 106.7 84 60.7
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.4e-20 106.3 139 46.8
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 7.5e-14 84.0 42 92.9
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 2.1e-08 65.9 76 53.9
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 3.6e-08 65.1 59 52.5


User provided reference genes

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