Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0023856g0010 Nicotiana tabacum HOM05D005208 ORTHO05D006415 3.0e-44 181.4 90 100.0
Nitab4.5_0002068g0050 Nicotiana tabacum HOM05D005208 ORTHO05D006415 4.4e-43 177.6 90 97.8
Peaxi162Scf00200g01315 Petunia axillaris HOM05D005208 ORTHO05D006415 7.0e-41 170.2 90 93.3
AUR62007315 Chenopodium quinoa HOM05D005208 ORTHO05D006415 9.2e-41 169.9 90 92.2
AUR62018690 Chenopodium quinoa HOM05D005208 ORTHO05D006415 9.2e-41 169.9 90 92.2
CANSAT11G1283 Cannabis sativa HOM05D005208 ORTHO05D006415 2.0e-40 168.7 90 90.0
DCAR_006299 Daucus carota HOM05D005208 ORTHO05D006415 2.7e-40 168.3 90 91.1
Potri.001G269500 Populus trichocarpa HOM05D005208 ORTHO05D006415 2.7e-40 168.3 90 91.1
Potri.009G064000 Populus trichocarpa HOM05D005208 ORTHO05D006415 2.7e-40 168.3 90 91.1
Solyc09g009640.3 Solanum lycopersicum HOM05D005208 ORTHO05D006415 2.7e-40 168.3 90 92.2
Sopen09g004410 Solanum pennellii HOM05D005208 ORTHO05D006415 2.7e-40 168.3 90 92.2
PGSC0003DMG400002694 Solanum tuberosum HOM05D005208 ORTHO05D006415 2.7e-40 168.3 90 92.2
ECA234G2562 Erigeron canadensis HOM05D005208 ORTHO05D006415 3.5e-40 167.9 90 90.0
Ah.12g055270 Amaranthus hybridus HOM05D005208 ORTHO05D006415 6.0e-40 167.2 90 90.0
ATR0605G393 Amborella trichopoda HOM05D005208 ORTHO05D006415 6.0e-40 167.2 90 91.1
CAN.G397.27 Capsicum annuum HOM05D005208 ORTHO05D006415 6.0e-40 167.2 90 91.1
Ciclev10033061m.g Citrus clementina HOM05D005208 ORTHO05D006415 6.0e-40 167.2 90 90.0
Hund19747 Selenicereus undatus HOM05D005208 ORTHO05D006415 6.0e-40 167.2 90 90.0
Manes.10G145800 Manihot esculenta HOM05D005208 ORTHO05D006415 7.8e-40 166.8 90 90.0
Manes.10G146000 Manihot esculenta HOM05D005208 ORTHO05D006415 7.8e-40 166.8 90 90.0
Sabra09G0047300 Salix brachista HOM05D005208 ORTHO05D006415 7.8e-40 166.8 90 90.0
TAR633G0908 Trochodendron aralioides HOM05D005208 ORTHO05D006415 7.8e-40 166.8 90 90.0
Ca_27575_v3 Cicer arietinum L. HOM05D005208 ORTHO05D006415 1.0e-39 166.4 90 87.8
Eucgr.K01365 Eucalyptus grandis HOM05D005208 ORTHO05D006415 1.0e-39 166.4 90 90.0
MBI11_g24620_MAGBIO Magnolia biondii HOM05D005208 ORTHO05D006415 1.0e-39 166.4 90 90.0
TAR369G0402 Trochodendron aralioides HOM05D005208 ORTHO05D006415 1.0e-39 166.4 90 88.9
CSS0039411 Camellia sinensis var. sinensis HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
COL.COLO4_23915 Corchorus olitorius HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
Gohir.A08G027400 Gossypium hirsutum HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
Gohir.D08G038100 Gossypium hirsutum HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
Gorai.004G036100 Gossypium raimondii HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
Medtr7g065100 Medicago truncatula HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
Nn7g36187 Nelumbo nucifera HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 90.0
Phvul.L003846 Phaseolus vulgaris HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
QL04p005416 Quercus lobata HOM05D005208 ORTHO05D006415 1.3e-39 166.0 89 88.8
Thecc.01G413400 Theobroma cacao HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
VMungo1127G1122 Vigna mungo HOM05D005208 ORTHO05D006415 1.3e-39 166.0 90 88.9
QL02p017788 Quercus lobata HOM05D005208 ORTHO05D006415 1.7e-39 165.6 89 88.8
Lj3g0003154 Lotus japonicus HOM05D005208 ORTHO05D006415 2.3e-39 165.2 90 88.9
Sc09g0000550 Simmondsia chinensis HOM05D005208 ORTHO05D006415 2.3e-39 165.2 90 90.0
Lalb_Chr12g0205961 Lupinus albus HOM05D005208 ORTHO05D006415 3.0e-39 164.9 90 87.8
MD07G1007200 Malus domestica HOM05D005208 ORTHO05D006415 3.0e-39 164.9 90 88.9
PSO447G0208 Papaver somniferum HOM05D005208 ORTHO05D006415 3.0e-39 164.9 90 87.8
RcHm_v2.0_Chr1g0314961 Rosa chinensis HOM05D005208 ORTHO05D006415 3.0e-39 164.9 90 88.9
Dinv43460 Davidia involucrata HOM05D005208 ORTHO05D006415 3.9e-39 164.5 90 88.9
FAN01G2640 Fragaria x ananassa HOM05D005208 ORTHO05D006415 3.9e-39 164.5 90 87.8
Glyma.05G149300 Glycine max HOM05D005208 ORTHO05D006415 3.9e-39 164.5 90 87.8
CiPaw.13G003300 Carya illinoinensis HOM05D005208 ORTHO05D006415 5.0e-39 164.1 90 88.9
CsaV3_3G032260 Cucumis sativus L. HOM05D005208 ORTHO05D006415 5.0e-39 164.1 90 87.8
ECA234G4110 Erigeron canadensis HOM05D005208 ORTHO05D006415 5.0e-39 164.1 90 87.8
FAN03G3338 Fragaria x ananassa HOM05D005208 ORTHO05D006415 5.0e-39 164.1 90 87.8
FAN06G3906 Fragaria x ananassa HOM05D005208 ORTHO05D006415 5.0e-39 164.1 90 87.8
FAN10G1294 Fragaria x ananassa HOM05D005208 ORTHO05D006415 5.0e-39 164.1 90 87.8
Actinidia36719 Actinidia chinensis HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 88.9
CDE04G0027 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 87.8
CDE07G1423 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 87.8
ClCG10G012490 Citrullus lanatus HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 87.8
Cc02_g27590 Coffea canephora HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 87.8
Duzib138G0119 Durio zibethinus HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 86.7
Duzib268G0815 Durio zibethinus HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 86.7
Glyma.08G105900 Glycine max HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 87.8
Oeu064261.1 Olea europaea HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 87.8
Sed0001189 Sechium edule HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 87.8
GSVIVG01032062001 Vitis vinifera HOM05D005208 ORTHO05D006415 6.6e-39 163.7 90 87.8
Haze_23082 Corylus avellana HOM05D005208 ORTHO05D006415 8.6e-39 163.3 90 87.8
TWI14G0133 Tripterygium wilfordii HOM05D005208 ORTHO05D006415 8.6e-39 163.3 90 88.9
arahy.Tifrunner.gnm1.ann1.SLE1RG Arachis hypogaea HOM05D005208 ORTHO05D006415 1.1e-38 162.9 90 87.8
HanXRQChr16g0519561 Helianthus annuus HOM05D005208 ORTHO05D006415 1.1e-38 162.9 90 86.7
MSTRG.5012 Avicennia marina HOM05D005208 ORTHO05D006415 1.5e-38 162.5 90 86.7
Lalb_Chr25g0283181 Lupinus albus HOM05D005208 ORTHO05D006415 1.5e-38 162.5 90 86.7
Psat4g195040 Pisum sativum HOM05D005208 ORTHO05D006415 1.5e-38 162.5 90 86.7
HPP92_022787 Vanilla planifolia HOM05D005208 ORTHO05D006415 1.5e-38 162.5 90 85.6
Oeu039120.1 Olea europaea HOM05D005208 ORTHO05D006415 1.9e-38 162.2 90 86.7
Migut.H01631 Erythranthe guttata HOM05D005208 ORTHO05D006415 2.5e-38 161.8 90 87.8
SEGI_02845 Sequoiadendron giganteum HOM05D005208 ORTHO05D006415 2.5e-38 161.8 90 87.8
CiPaw.13G163800 Carya illinoinensis HOM05D005208 ORTHO05D006415 4.3e-38 161.0 90 86.7
Hund22069 Selenicereus undatus HOM05D005208 ORTHO05D006415 5.6e-38 160.6 90 86.7
PGR119G1849 Punica granatum HOM05D005208 ORTHO05D006415 7.3e-38 160.2 90 88.9
SalBow4G0699 Salvia bowleyana HOM05D005208 ORTHO05D006415 7.3e-38 160.2 90 87.8
Sc20g0007120 Simmondsia chinensis HOM05D005208 ORTHO05D006415 1.2e-37 159.5 88 87.5
THA.LOC104809874 Tarenaya hassleriana HOM05D005208 ORTHO05D006415 1.2e-37 159.5 89 86.5
Carub.0005s0302 Capsella rubella HOM05D005208 ORTHO05D006415 1.6e-37 159.1 90 85.6
Haze_03233 Corylus avellana HOM05D005208 ORTHO05D006415 2.1e-37 158.7 102 79.4
Rhsim07G0054400 Rhododendron simsii HOM05D005208 ORTHO05D006415 2.1e-37 158.7 100 81.0
Sp2g14670 Schrenkiella parvula HOM05D005208 ORTHO05D006415 3.6e-37 157.9 90 84.4
CARHR146260 Cardamine hirsuta HOM05D005208 ORTHO05D006415 6.2e-37 157.1 90 82.2
AagrBONN_evm.TU.Sc2ySwM_117.3183 Anthoceros agrestis HOM05D005208 ORTHO05D006415 1.4e-36 156.0 90 84.4
Mapoly0087s0020 Marchantia polymorpha HOM05D005208 ORTHO05D006415 1.8e-36 155.6 90 85.6
AL5G13680 Arabidopsis lyrata HOM05D005208 ORTHO05D006415 3.1e-36 154.8 90 83.3
vmacro07761 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 3.1e-36 154.8 100 79.0
EL10Ac7g17127 Beta vulgaris HOM05D005208 ORTHO05D006415 4.0e-36 154.5 115 70.4
Glyma.12G239000 Glycine max HOM05D005208 ORTHO05D006415 4.0e-36 154.5 90 85.6
SMO141G0024 Selaginella moellendorffii HOM05D005208 ORTHO05D006415 5.2e-36 154.1 89 84.3
BcaC03g17248 Brassica carinata HOM05D005208 ORTHO05D006415 6.8e-36 153.7 90 83.3
C02p51820 Brassica napus HOM05D005208 ORTHO05D013951 6.8e-36 153.7 90 83.3
BolC2t11268H Brassica oleracea HOM05D005208 ORTHO05D006415 6.8e-36 153.7 90 83.3
Thhalv10005187m.g Eutrema salsugineum HOM05D005208 ORTHO05D006415 8.9e-36 153.3 90 83.3
AT2G03870 Arabidopsis thaliana HOM05D005208 ORTHO05D006415 1.5e-35 152.5 90 82.2
BcaB07g30643 Brassica carinata HOM05D005208 ORTHO05D006415 1.5e-35 152.5 87 85.1
A02p33690 Brassica napus HOM05D005208 ORTHO05D006415 3.4e-35 151.4 90 82.2
BraA02t08388Z Brassica rapa HOM05D005208 ORTHO05D006415 3.4e-35 151.4 90 82.2
arahy.Tifrunner.gnm1.ann1.V9LFMD Arachis hypogaea HOM05D005208 ORTHO05D006415 4.4e-35 151.0 110 71.8
BcaC06g31141 Brassica carinata HOM05D005208 ORTHO05D006415 5.8e-35 150.6 90 82.2
C07p34250 Brassica napus HOM05D005208 ORTHO05D006415 5.8e-35 150.6 90 82.2
BolC7t43954H Brassica oleracea HOM05D005208 ORTHO05D006415 5.8e-35 150.6 90 82.2
A06p42830 Brassica napus HOM05D005208 ORTHO05D006415 9.8e-35 149.8 87 83.9
BraA06t27195Z Brassica rapa HOM05D005208 ORTHO05D006415 9.8e-35 149.8 87 83.9
SGA_v2.0_scaffold4G02254 Striga asiatica HOM05D005208 ORTHO05D006415 2.2e-34 148.7 101 75.2
AagrBONN_evm.TU.Sc2ySwM_368.1897 Anthoceros agrestis HOM05D005208 ORTHO05D006415 4.9e-34 147.5 90 83.3
Os08g0177700 Oryza sativa ssp. japonica HOM05D005208 ORTHO05D006415 1.4e-33 146.0 90 82.2
Pp3c8_4480 Physcomitrium patens HOM05D005208 ORTHO05D006415 1.9e-33 145.6 84 83.3
Pp3c4_9640 Physcomitrium patens HOM05D005208 ORTHO05D006415 5.4e-33 144.1 85 81.2
Zm00001eb069280 Zea mays HOM05D005208 ORTHO05D006415 5.4e-33 144.1 84 83.3
Zm00001eb431700 Zea mays HOM05D005208 ORTHO05D006415 2.1e-32 142.1 90 81.1
Lj4g0005394 Lotus japonicus HOM05D005208 ORTHO05D006415 3.0e-31 138.3 84 82.1
Aa31LG2G6760 Aethionema arabicum HOM05D005208 ORTHO05D006415 5.1e-31 137.5 112 65.2
Cre03.g164101 Chlamydomonas reinhardtii HOM05D005208 ORTHO05D006415 1.1e-30 136.3 85 72.9
MCO14G462 Micromonas commoda HOM05D005208 ORTHO05D006415 1.1e-30 136.3 88 70.5
Dinv09372 Davidia involucrata HOM05D005208 ORTHO05D006415 1.9e-30 135.6 81 82.7
Medtr8g036205 Medicago truncatula HOM05D005208 ORTHO05D006415 2.8e-29 131.7 76 85.5
BolC7t45182H Brassica oleracea HOM05D005208 ORTHO05D006415 4.0e-28 127.9 77 81.8
TPR.G21719 Trifolium pratense HOM05D005208 ORTHO05D006415 4.0e-28 127.9 72 84.7
vmacro00152 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 2.6e-27 125.2 124 58.1
Atru.chr11.2641 Acer truncatum HOM05D005208 ORTHO05D006415 4.6e-24 114.4 70 81.4
Sabra16G0165100 Salix brachista HOM05D005208 ORTHO05D006415 6.0e-24 114.0 192 41.7
MD02G1314900 Malus domestica HOM05D005208 ORTHO05D006415 7.8e-24 113.6 62 88.7
FvH4_7g00800 Fragaria vesca HOM05D005208 ORTHO05D006415 1.3e-23 112.8 62 87.1
Migut.N01478 Erythranthe guttata HOM05D005208 ORTHO05D006415 1.7e-23 112.5 90 66.7
Nn2g15393 Nelumbo nucifera HOM05D005208 ORTHO05D006415 1.7e-23 112.5 62 88.7
TPR.G34585 Trifolium pratense HOM05D000107 ORTHO05D000062 1.5e-22 109.4 62 83.9
Haze_27705 Corylus avellana HOM05D005208 ORTHO05D006415 1.9e-22 109.0 83 60.2
Prupe.2G010100 Prunus persica HOM05D005208 ORTHO05D006415 1.9e-22 109.0 61 86.9
PSO210G4938 Papaver somniferum HOM05D005208 ORTHO05D006415 3.3e-22 108.2 59 88.1
Aqoxy5G03601_Aqoxy5G03602 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 5.6e-22 107.5 61 86.9
PRCOL_00006352 Prasinoderma coloniale HOM05D000731 ORTHO05D005852 9.5e-22 106.7 84 63.1
Aqoxy6G00475 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 1.6e-21 105.9 61 86.9
Ah.08g209200 Amaranthus hybridus HOM05D005208 ORTHO05D006415 6.4e-18 94.0 48 89.6
QL02p017866 Quercus lobata HOM05D005208 ORTHO05D006415 1.2e-16 89.7 45 88.9
MELO3C023964.2 Cucumis melo HOM05D005208 ORTHO05D006415 3.5e-16 88.2 46 87.0
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 6.0e-16 87.4 47 83.0
Sed0010704 Sechium edule HOM05D005208 ORTHO05D006415 5.1e-15 84.3 47 85.1
Cpa.g.sc3559.1 Carica papaya HOM05D005208 ORTHO05D006415 3.6e-13 78.2 42 90.5
MELO3C000014.2 Cucumis melo HOM05D005208 ORTHO05D006415 4.7e-13 77.8 42 90.5
Pp3c3_27830 Physcomitrium patens HOM05D005208 ORTHO05D006415 4.0e-12 74.7 87 50.6
TPR.G34928 Trifolium pratense HOM05D009458 ORTHO05D014663 2.1e-08 62.4 57 61.4
Actinidia31052 Actinidia chinensis HOM05D005208 ORTHO05D006415 6.0e-08 60.8 43 74.4
Cc06_g06010 Coffea canephora HOM05D003494 ORTHO05D004033 5.6e-06 54.3 70 38.6
CAN.G1433.22 Capsicum annuum HOM05D003494 ORTHO05D004033 9.6e-06 53.5 70 35.7
HanXRQChr08g0229821 Helianthus annuus HOM05D003494 ORTHO05D004033 9.6e-06 53.5 70 37.1
Lsat_1_v5_gn_9_20741 Lactuca sativa HOM05D003494 ORTHO05D004033 9.6e-06 53.5 70 37.1


User provided reference genes

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